Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt corA and OKGIIK_02950 are separated by 74 nucleotides OKGIIK_02950 and OKGIIK_02955 are separated by 78 nucleotides OKGIIK_02955 and ybeY are separated by 147 nucleotides
OKGIIK_02945: corA - magnesium/cobalt transporter CorA, at 671,585 to 672,601
corA
OKGIIK_02950: OKGIIK_02950 - DUF4105 domain-containing protein, at 672,676 to 673,893
_02950
OKGIIK_02955: OKGIIK_02955 - CBS domain-containing protein, at 673,972 to 674,745
_02955
OKGIIK_02960: ybeY - rRNA maturation RNase YbeY, at 674,893 to 675,354
ybeY
Position (kb) 672
673
674 Strain fitness (log2 ratio) -2
-1
0
1
2 at 671.710 kb on - strand, within corA at 671.710 kb on - strand, within corA at 671.877 kb on + strand, within corA at 671.877 kb on + strand, within corA at 671.877 kb on + strand, within corA at 671.877 kb on + strand, within corA at 671.877 kb on + strand, within corA at 671.877 kb on + strand, within corA at 671.878 kb on - strand, within corA at 671.892 kb on + strand, within corA at 671.892 kb on + strand, within corA at 671.893 kb on - strand, within corA at 671.893 kb on - strand, within corA at 671.893 kb on - strand, within corA at 672.006 kb on + strand, within corA at 672.006 kb on + strand, within corA at 672.006 kb on + strand, within corA at 672.006 kb on + strand, within corA at 672.022 kb on + strand, within corA at 672.022 kb on + strand, within corA at 672.022 kb on + strand, within corA at 672.022 kb on + strand, within corA at 672.022 kb on + strand, within corA at 672.022 kb on + strand, within corA at 672.023 kb on - strand, within corA at 672.023 kb on - strand, within corA at 672.023 kb on - strand, within corA at 672.023 kb on - strand, within corA at 672.023 kb on - strand, within corA at 672.023 kb on - strand, within corA at 672.023 kb on - strand, within corA at 672.125 kb on + strand, within corA at 672.126 kb on - strand, within corA at 672.132 kb on + strand, within corA at 672.132 kb on + strand, within corA at 672.132 kb on + strand, within corA at 672.132 kb on + strand, within corA at 672.132 kb on + strand, within corA at 672.133 kb on - strand, within corA at 672.133 kb on - strand, within corA at 672.133 kb on - strand, within corA at 672.133 kb on - strand, within corA at 672.133 kb on - strand, within corA at 672.133 kb on - strand, within corA at 672.133 kb on - strand, within corA at 672.141 kb on + strand, within corA at 672.141 kb on + strand, within corA at 672.141 kb on + strand, within corA at 672.141 kb on + strand, within corA at 672.141 kb on + strand, within corA at 672.141 kb on + strand, within corA at 672.141 kb on + strand, within corA at 672.141 kb on + strand, within corA at 672.142 kb on - strand, within corA at 672.142 kb on - strand, within corA at 672.142 kb on - strand, within corA at 672.142 kb on - strand, within corA at 672.142 kb on - strand, within corA at 672.142 kb on - strand, within corA at 672.202 kb on - strand, within corA at 672.237 kb on + strand, within corA at 672.238 kb on - strand, within corA at 672.238 kb on - strand, within corA at 672.330 kb on + strand, within corA at 672.330 kb on + strand, within corA at 672.438 kb on + strand, within corA at 672.438 kb on + strand, within corA at 672.439 kb on - strand, within corA at 672.439 kb on - strand, within corA at 672.439 kb on - strand, within corA at 672.439 kb on - strand, within corA at 672.439 kb on - strand, within corA at 672.439 kb on - strand, within corA at 672.531 kb on + strand at 672.532 kb on - strand at 672.677 kb on + strand at 672.677 kb on + strand at 672.677 kb on + strand at 672.677 kb on + strand at 672.677 kb on + strand at 672.678 kb on - strand at 672.678 kb on - strand at 672.678 kb on - strand at 672.683 kb on + strand at 672.691 kb on + strand at 672.691 kb on + strand at 672.692 kb on - strand at 674.037 kb on - strand at 674.037 kb on - strand at 674.037 kb on - strand at 674.037 kb on - strand at 674.115 kb on - strand, within OKGIIK_02955 at 674.115 kb on - strand, within OKGIIK_02955 at 674.115 kb on - strand, within OKGIIK_02955 at 674.115 kb on - strand, within OKGIIK_02955 at 674.115 kb on - strand, within OKGIIK_02955 at 674.115 kb on - strand, within OKGIIK_02955 at 674.115 kb on - strand, within OKGIIK_02955 at 674.310 kb on - strand, within OKGIIK_02955 at 674.310 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.791 kb on - strand at 674.791 kb on - strand at 674.791 kb on - strand at 674.813 kb on - strand at 674.813 kb on - strand at 674.813 kb on - strand at 674.813 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 671,710 - corA OKGIIK_02945 0.12 +0.3 671,710 - corA OKGIIK_02945 0.12 +0.1 671,877 + corA OKGIIK_02945 0.29 +0.9 671,877 + corA OKGIIK_02945 0.29 -2.4 671,877 + corA OKGIIK_02945 0.29 +0.3 671,877 + corA OKGIIK_02945 0.29 -1.1 671,877 + corA OKGIIK_02945 0.29 -1.1 671,877 + corA OKGIIK_02945 0.29 -1.9 671,878 - corA OKGIIK_02945 0.29 -0.6 671,892 + corA OKGIIK_02945 0.30 -0.9 671,892 + corA OKGIIK_02945 0.30 +0.4 671,893 - corA OKGIIK_02945 0.30 +0.5 671,893 - corA OKGIIK_02945 0.30 +0.4 671,893 - corA OKGIIK_02945 0.30 +0.3 672,006 + corA OKGIIK_02945 0.41 -0.8 672,006 + corA OKGIIK_02945 0.41 -2.0 672,006 + corA OKGIIK_02945 0.41 +0.4 672,006 + corA OKGIIK_02945 0.41 +0.5 672,022 + corA OKGIIK_02945 0.43 +0.3 672,022 + corA OKGIIK_02945 0.43 +1.3 672,022 + corA OKGIIK_02945 0.43 +1.3 672,022 + corA OKGIIK_02945 0.43 -0.6 672,022 + corA OKGIIK_02945 0.43 -1.1 672,022 + corA OKGIIK_02945 0.43 +0.5 672,023 - corA OKGIIK_02945 0.43 -1.5 672,023 - corA OKGIIK_02945 0.43 +1.0 672,023 - corA OKGIIK_02945 0.43 -1.2 672,023 - corA OKGIIK_02945 0.43 -1.1 672,023 - corA OKGIIK_02945 0.43 -1.6 672,023 - corA OKGIIK_02945 0.43 +0.1 672,023 - corA OKGIIK_02945 0.43 -0.1 672,125 + corA OKGIIK_02945 0.53 +0.7 672,126 - corA OKGIIK_02945 0.53 -1.5 672,132 + corA OKGIIK_02945 0.54 -0.1 672,132 + corA OKGIIK_02945 0.54 -1.6 672,132 + corA OKGIIK_02945 0.54 -1.1 672,132 + corA OKGIIK_02945 0.54 -0.4 672,132 + corA OKGIIK_02945 0.54 -1.6 672,133 - corA OKGIIK_02945 0.54 +0.1 672,133 - corA OKGIIK_02945 0.54 +1.2 672,133 - corA OKGIIK_02945 0.54 +0.5 672,133 - corA OKGIIK_02945 0.54 -1.5 672,133 - corA OKGIIK_02945 0.54 -0.2 672,133 - corA OKGIIK_02945 0.54 +0.1 672,133 - corA OKGIIK_02945 0.54 -1.5 672,141 + corA OKGIIK_02945 0.55 -0.5 672,141 + corA OKGIIK_02945 0.55 -0.3 672,141 + corA OKGIIK_02945 0.55 +1.1 672,141 + corA OKGIIK_02945 0.55 +1.5 672,141 + corA OKGIIK_02945 0.55 -0.6 672,141 + corA OKGIIK_02945 0.55 -0.9 672,141 + corA OKGIIK_02945 0.55 -1.5 672,141 + corA OKGIIK_02945 0.55 +2.2 672,142 - corA OKGIIK_02945 0.55 -0.8 672,142 - corA OKGIIK_02945 0.55 +0.8 672,142 - corA OKGIIK_02945 0.55 -2.1 672,142 - corA OKGIIK_02945 0.55 -1.3 672,142 - corA OKGIIK_02945 0.55 -1.5 672,142 - corA OKGIIK_02945 0.55 +1.2 672,202 - corA OKGIIK_02945 0.61 +0.3 672,237 + corA OKGIIK_02945 0.64 -1.9 672,238 - corA OKGIIK_02945 0.64 -0.0 672,238 - corA OKGIIK_02945 0.64 +1.2 672,330 + corA OKGIIK_02945 0.73 -0.8 672,330 + corA OKGIIK_02945 0.73 -0.4 672,438 + corA OKGIIK_02945 0.84 +0.3 672,438 + corA OKGIIK_02945 0.84 -0.5 672,439 - corA OKGIIK_02945 0.84 -1.1 672,439 - corA OKGIIK_02945 0.84 +0.2 672,439 - corA OKGIIK_02945 0.84 +1.5 672,439 - corA OKGIIK_02945 0.84 +0.5 672,439 - corA OKGIIK_02945 0.84 -1.7 672,439 - corA OKGIIK_02945 0.84 -0.1 672,531 + -0.3 672,532 - -0.1 672,677 + +0.8 672,677 + -0.4 672,677 + -0.5 672,677 + -0.3 672,677 + +0.8 672,678 - +1.5 672,678 - -0.5 672,678 - +1.1 672,683 + +1.0 672,691 + +0.2 672,691 + -0.6 672,692 - +0.8 674,037 - +0.2 674,037 - -1.8 674,037 - +1.0 674,037 - -2.1 674,115 - OKGIIK_02955 0.18 -2.5 674,115 - OKGIIK_02955 0.18 -2.6 674,115 - OKGIIK_02955 0.18 -0.1 674,115 - OKGIIK_02955 0.18 -0.1 674,115 - OKGIIK_02955 0.18 -0.4 674,115 - OKGIIK_02955 0.18 -0.6 674,115 - OKGIIK_02955 0.18 +0.1 674,310 - OKGIIK_02955 0.44 -1.1 674,310 - OKGIIK_02955 0.44 -0.6 674,448 - OKGIIK_02955 0.61 +0.8 674,448 - OKGIIK_02955 0.61 -1.4 674,448 - OKGIIK_02955 0.61 +0.2 674,448 - OKGIIK_02955 0.61 +0.0 674,448 - OKGIIK_02955 0.61 -1.9 674,448 - OKGIIK_02955 0.61 -1.3 674,791 - -0.8 674,791 - +1.1 674,791 - -0.8 674,813 - -1.5 674,813 - +0.3 674,813 - +0.2 674,813 - -0.0
Or see this region's nucleotide sequence