Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tar and spoIIAA are separated by 10 nucleotides spoIIAA and OKGIIK_02930 are separated by 72 nucleotides OKGIIK_02930 and OKGIIK_02935 are separated by 197 nucleotides OKGIIK_02935 and OKGIIK_02940 are separated by 76 nucleotides OKGIIK_02940 and corA are separated by 75 nucleotides
OKGIIK_02920: tar - Methyl-accepting chemotaxis protein (MCP), at 668,398 to 669,576
tar
OKGIIK_02925: spoIIAA - Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 669,587 to 669,886
spoIIAA
OKGIIK_02930: OKGIIK_02930 - hypothetical protein, at 669,959 to 670,321
_02930
OKGIIK_02935: OKGIIK_02935 - hypothetical protein, at 670,519 to 670,869
_02935
OKGIIK_02940: OKGIIK_02940 - DNA mismatch repair protein MutT, at 670,946 to 671,509
_02940
OKGIIK_02945: corA - magnesium/cobalt transporter CorA, at 671,585 to 672,601
corA
Position (kb) 670
671 Strain fitness (log2 ratio) -2
-1
0
1
2 at 669.710 kb on + strand, within spoIIAA at 669.710 kb on + strand, within spoIIAA at 669.710 kb on + strand, within spoIIAA at 669.710 kb on + strand, within spoIIAA at 669.710 kb on + strand, within spoIIAA at 669.710 kb on + strand, within spoIIAA at 669.710 kb on + strand, within spoIIAA at 669.710 kb on + strand, within spoIIAA at 669.710 kb on + strand, within spoIIAA at 669.710 kb on + strand, within spoIIAA at 669.710 kb on + strand, within spoIIAA at 669.710 kb on + strand, within spoIIAA at 669.711 kb on - strand, within spoIIAA at 669.711 kb on - strand, within spoIIAA at 669.711 kb on - strand, within spoIIAA at 669.711 kb on - strand, within spoIIAA at 669.711 kb on - strand, within spoIIAA at 669.711 kb on - strand, within spoIIAA at 669.711 kb on - strand, within spoIIAA at 669.711 kb on - strand, within spoIIAA at 669.711 kb on - strand, within spoIIAA at 669.808 kb on - strand, within spoIIAA at 670.014 kb on + strand, within OKGIIK_02930 at 670.295 kb on + strand at 670.295 kb on + strand at 670.295 kb on + strand at 670.296 kb on - strand at 670.296 kb on - strand at 670.296 kb on - strand at 670.325 kb on + strand at 670.392 kb on + strand at 670.392 kb on + strand at 670.393 kb on - strand at 670.393 kb on - strand at 670.432 kb on - strand at 670.814 kb on - strand, within OKGIIK_02935 at 670.834 kb on + strand, within OKGIIK_02935 at 670.834 kb on + strand, within OKGIIK_02935 at 670.834 kb on + strand, within OKGIIK_02935 at 670.834 kb on + strand, within OKGIIK_02935 at 670.835 kb on - strand at 670.835 kb on - strand at 670.835 kb on - strand at 670.835 kb on - strand at 670.835 kb on - strand at 670.835 kb on - strand at 670.835 kb on - strand at 671.002 kb on - strand at 671.004 kb on + strand, within OKGIIK_02940 at 671.004 kb on + strand, within OKGIIK_02940 at 671.005 kb on - strand, within OKGIIK_02940 at 671.005 kb on - strand, within OKGIIK_02940 at 671.054 kb on + strand, within OKGIIK_02940 at 671.054 kb on + strand, within OKGIIK_02940 at 671.054 kb on + strand, within OKGIIK_02940 at 671.055 kb on - strand, within OKGIIK_02940 at 671.055 kb on - strand, within OKGIIK_02940 at 671.055 kb on - strand, within OKGIIK_02940 at 671.326 kb on - strand, within OKGIIK_02940 at 671.326 kb on - strand, within OKGIIK_02940 at 671.326 kb on - strand, within OKGIIK_02940 at 671.406 kb on + strand, within OKGIIK_02940 at 671.407 kb on - strand, within OKGIIK_02940 at 671.407 kb on - strand, within OKGIIK_02940 at 671.407 kb on - strand, within OKGIIK_02940 at 671.407 kb on - strand, within OKGIIK_02940 at 671.407 kb on - strand, within OKGIIK_02940 at 671.407 kb on - strand, within OKGIIK_02940 at 671.407 kb on - strand, within OKGIIK_02940 at 671.586 kb on + strand at 671.587 kb on - strand at 671.587 kb on - strand at 671.616 kb on + strand at 671.616 kb on + strand at 671.616 kb on + strand at 671.616 kb on + strand at 671.616 kb on + strand at 671.616 kb on + strand at 671.616 kb on + strand at 671.616 kb on + strand at 671.616 kb on + strand at 671.616 kb on + strand at 671.617 kb on - strand at 671.617 kb on - strand at 671.617 kb on - strand at 671.617 kb on - strand at 671.617 kb on - strand at 671.617 kb on - strand at 671.617 kb on - strand at 671.617 kb on - strand at 671.617 kb on - strand at 671.617 kb on - strand at 671.661 kb on + strand at 671.661 kb on + strand at 671.710 kb on - strand, within corA at 671.710 kb on - strand, within corA
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 669,710 + spoIIAA OKGIIK_02925 0.41 +1.2 669,710 + spoIIAA OKGIIK_02925 0.41 -1.2 669,710 + spoIIAA OKGIIK_02925 0.41 +0.1 669,710 + spoIIAA OKGIIK_02925 0.41 +0.8 669,710 + spoIIAA OKGIIK_02925 0.41 +1.2 669,710 + spoIIAA OKGIIK_02925 0.41 -0.8 669,710 + spoIIAA OKGIIK_02925 0.41 -0.5 669,710 + spoIIAA OKGIIK_02925 0.41 -1.1 669,710 + spoIIAA OKGIIK_02925 0.41 +0.5 669,710 + spoIIAA OKGIIK_02925 0.41 +1.3 669,710 + spoIIAA OKGIIK_02925 0.41 -1.1 669,710 + spoIIAA OKGIIK_02925 0.41 +2.1 669,711 - spoIIAA OKGIIK_02925 0.41 -0.5 669,711 - spoIIAA OKGIIK_02925 0.41 +1.5 669,711 - spoIIAA OKGIIK_02925 0.41 -0.4 669,711 - spoIIAA OKGIIK_02925 0.41 -0.3 669,711 - spoIIAA OKGIIK_02925 0.41 -0.5 669,711 - spoIIAA OKGIIK_02925 0.41 -1.3 669,711 - spoIIAA OKGIIK_02925 0.41 -0.4 669,711 - spoIIAA OKGIIK_02925 0.41 -0.8 669,711 - spoIIAA OKGIIK_02925 0.41 -0.8 669,808 - spoIIAA OKGIIK_02925 0.74 +0.0 670,014 + OKGIIK_02930 0.15 -1.9 670,295 + -1.3 670,295 + -0.9 670,295 + +1.1 670,296 - +0.5 670,296 - -1.1 670,296 - -0.5 670,325 + -0.7 670,392 + +0.5 670,392 + +1.4 670,393 - -0.6 670,393 - -0.2 670,432 - -0.9 670,814 - OKGIIK_02935 0.84 -0.2 670,834 + OKGIIK_02935 0.90 -0.6 670,834 + OKGIIK_02935 0.90 -1.0 670,834 + OKGIIK_02935 0.90 -1.1 670,834 + OKGIIK_02935 0.90 -0.8 670,835 - +1.7 670,835 - -0.5 670,835 - -0.8 670,835 - -1.8 670,835 - +0.3 670,835 - +1.3 670,835 - -1.5 671,002 - -1.2 671,004 + OKGIIK_02940 0.10 +2.1 671,004 + OKGIIK_02940 0.10 -1.1 671,005 - OKGIIK_02940 0.10 +1.1 671,005 - OKGIIK_02940 0.10 +0.8 671,054 + OKGIIK_02940 0.19 +0.5 671,054 + OKGIIK_02940 0.19 -0.8 671,054 + OKGIIK_02940 0.19 -0.6 671,055 - OKGIIK_02940 0.19 +0.4 671,055 - OKGIIK_02940 0.19 +0.1 671,055 - OKGIIK_02940 0.19 -0.5 671,326 - OKGIIK_02940 0.67 +0.4 671,326 - OKGIIK_02940 0.67 +0.5 671,326 - OKGIIK_02940 0.67 +1.0 671,406 + OKGIIK_02940 0.82 -0.5 671,407 - OKGIIK_02940 0.82 -0.7 671,407 - OKGIIK_02940 0.82 +1.8 671,407 - OKGIIK_02940 0.82 +1.5 671,407 - OKGIIK_02940 0.82 +0.5 671,407 - OKGIIK_02940 0.82 +0.3 671,407 - OKGIIK_02940 0.82 -1.1 671,407 - OKGIIK_02940 0.82 +0.7 671,586 + -1.1 671,587 - -0.8 671,587 - +1.1 671,616 + -0.1 671,616 + +1.0 671,616 + +0.2 671,616 + -0.5 671,616 + -0.4 671,616 + -1.6 671,616 + -2.1 671,616 + +0.6 671,616 + +1.1 671,616 + -0.1 671,617 - -0.8 671,617 - +0.8 671,617 - -1.3 671,617 - -0.5 671,617 - +1.9 671,617 - +0.9 671,617 - -0.8 671,617 - -0.1 671,617 - +0.9 671,617 - +0.3 671,661 + -0.1 671,661 + +1.0 671,710 - corA OKGIIK_02945 0.12 +0.3 671,710 - corA OKGIIK_02945 0.12 +0.1
Or see this region's nucleotide sequence