Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02550 and Phe_trna are separated by 467 nucleotides Phe_trna and yggX are separated by 81 nucleotides yggX and mutY are separated by 100 nucleotides
OKGIIK_02550: OKGIIK_02550 - AAA family ATPase, at 600,139 to 601,485
_02550
OKGIIK_02555: Phe_trna - tRNA-Phe, at 601,953 to 602,028
_trna
OKGIIK_02560: yggX - oxidative damage protection protein, at 602,110 to 602,388
yggX
OKGIIK_02565: mutY - A/G-specific adenine glycosylase, at 602,489 to 603,541
mutY
Position (kb) 601
602
603 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 601.042 kb on + strand, within OKGIIK_02550 at 601.043 kb on - strand, within OKGIIK_02550 at 601.069 kb on - strand, within OKGIIK_02550 at 601.069 kb on - strand, within OKGIIK_02550 at 601.088 kb on + strand, within OKGIIK_02550 at 601.088 kb on + strand, within OKGIIK_02550 at 601.088 kb on + strand, within OKGIIK_02550 at 601.089 kb on - strand, within OKGIIK_02550 at 601.089 kb on - strand, within OKGIIK_02550 at 601.089 kb on - strand, within OKGIIK_02550 at 601.089 kb on - strand, within OKGIIK_02550 at 601.089 kb on - strand, within OKGIIK_02550 at 601.089 kb on - strand, within OKGIIK_02550 at 601.089 kb on - strand, within OKGIIK_02550 at 601.135 kb on + strand, within OKGIIK_02550 at 601.135 kb on + strand, within OKGIIK_02550 at 601.344 kb on - strand, within OKGIIK_02550 at 601.344 kb on - strand, within OKGIIK_02550 at 601.425 kb on + strand at 601.425 kb on + strand at 601.426 kb on - strand at 601.426 kb on - strand at 601.426 kb on - strand at 601.426 kb on - strand at 601.426 kb on - strand at 601.426 kb on - strand at 601.426 kb on - strand at 601.462 kb on + strand at 601.462 kb on + strand at 601.462 kb on + strand at 601.462 kb on + strand at 601.462 kb on + strand at 601.462 kb on + strand at 601.462 kb on + strand at 601.463 kb on - strand at 601.500 kb on + strand at 601.501 kb on - strand at 601.504 kb on + strand at 601.504 kb on + strand at 601.504 kb on + strand at 601.504 kb on + strand at 601.505 kb on - strand at 601.526 kb on + strand at 601.526 kb on + strand at 601.526 kb on + strand at 601.526 kb on + strand at 601.526 kb on + strand at 601.526 kb on + strand at 601.526 kb on + strand at 601.527 kb on - strand at 601.527 kb on - strand at 601.527 kb on - strand at 601.527 kb on - strand at 601.527 kb on - strand at 601.527 kb on - strand at 601.527 kb on - strand at 601.528 kb on + strand at 601.528 kb on + strand at 601.528 kb on + strand at 601.529 kb on - strand at 601.529 kb on - strand at 601.529 kb on - strand at 601.529 kb on - strand at 601.672 kb on + strand at 601.672 kb on + strand at 601.672 kb on + strand at 601.672 kb on + strand at 601.672 kb on + strand at 601.672 kb on + strand at 601.672 kb on + strand at 601.673 kb on - strand at 601.673 kb on - strand at 601.673 kb on - strand at 601.673 kb on - strand at 601.673 kb on - strand at 601.679 kb on + strand at 601.680 kb on - strand at 601.693 kb on - strand at 601.693 kb on - strand at 601.745 kb on + strand at 601.745 kb on + strand at 601.745 kb on + strand at 601.745 kb on + strand at 601.745 kb on + strand at 601.745 kb on + strand at 601.745 kb on + strand at 601.745 kb on + strand at 601.746 kb on - strand at 601.746 kb on - strand at 601.746 kb on - strand at 601.826 kb on + strand at 601.826 kb on + strand at 601.826 kb on + strand at 601.827 kb on - strand at 601.827 kb on - strand at 601.842 kb on + strand at 601.842 kb on + strand at 601.881 kb on + strand at 601.882 kb on - strand at 601.882 kb on - strand at 601.882 kb on - strand at 601.928 kb on + strand at 601.940 kb on - strand at 601.942 kb on - strand at 602.195 kb on + strand, within yggX at 602.195 kb on + strand, within yggX at 602.195 kb on + strand, within yggX at 602.195 kb on + strand, within yggX at 602.195 kb on + strand, within yggX at 602.196 kb on - strand, within yggX at 602.196 kb on - strand, within yggX at 602.196 kb on - strand, within yggX at 602.196 kb on - strand, within yggX at 602.232 kb on - strand, within yggX at 602.232 kb on - strand, within yggX at 602.287 kb on + strand, within yggX at 602.288 kb on - strand, within yggX at 602.297 kb on + strand, within yggX at 602.297 kb on + strand, within yggX at 602.297 kb on + strand, within yggX at 602.297 kb on + strand, within yggX at 602.297 kb on + strand, within yggX at 602.297 kb on + strand, within yggX at 602.297 kb on + strand, within yggX at 602.297 kb on + strand, within yggX at 602.297 kb on + strand, within yggX at 602.297 kb on + strand, within yggX at 602.297 kb on + strand, within yggX at 602.298 kb on - strand, within yggX at 602.298 kb on - strand, within yggX at 602.298 kb on - strand, within yggX at 602.298 kb on - strand, within yggX at 602.298 kb on - strand, within yggX at 602.298 kb on - strand, within yggX at 602.298 kb on - strand, within yggX at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.578 kb on + strand at 602.629 kb on + strand, within mutY at 602.629 kb on + strand, within mutY at 602.630 kb on - strand, within mutY at 602.641 kb on - strand, within mutY at 602.953 kb on + strand, within mutY at 602.953 kb on + strand, within mutY at 602.953 kb on + strand, within mutY at 602.953 kb on + strand, within mutY at 602.953 kb on + strand, within mutY at 602.953 kb on + strand, within mutY at 602.953 kb on + strand, within mutY at 602.953 kb on + strand, within mutY at 602.953 kb on + strand, within mutY at 602.953 kb on + strand, within mutY at 602.953 kb on + strand, within mutY at 602.953 kb on + strand, within mutY at 602.953 kb on + strand, within mutY at 602.953 kb on + strand, within mutY at 602.953 kb on + strand, within mutY at 602.954 kb on - strand, within mutY at 602.954 kb on - strand, within mutY at 602.954 kb on - strand, within mutY at 602.954 kb on - strand, within mutY at 602.954 kb on - strand, within mutY at 602.954 kb on - strand, within mutY at 602.954 kb on - strand, within mutY at 602.954 kb on - strand, within mutY at 602.954 kb on - strand, within mutY at 602.954 kb on - strand, within mutY at 602.954 kb on - strand, within mutY at 602.954 kb on - strand, within mutY at 602.954 kb on - strand, within mutY at 602.954 kb on - strand, within mutY at 602.954 kb on - strand, within mutY at 602.954 kb on - strand, within mutY at 602.954 kb on - strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.957 kb on + strand, within mutY at 602.958 kb on - strand, within mutY at 602.958 kb on - strand, within mutY at 602.958 kb on - strand, within mutY at 602.958 kb on - strand, within mutY at 602.958 kb on - strand, within mutY at 602.958 kb on - strand, within mutY at 602.958 kb on - strand, within mutY at 602.958 kb on - strand, within mutY at 602.958 kb on - strand, within mutY at 602.958 kb on - strand, within mutY at 602.958 kb on - strand, within mutY at 602.958 kb on - strand, within mutY at 602.991 kb on + strand, within mutY at 602.991 kb on + strand, within mutY at 602.991 kb on + strand, within mutY at 602.991 kb on + strand, within mutY at 602.991 kb on + strand, within mutY at 602.991 kb on + strand, within mutY at 602.991 kb on + strand, within mutY at 602.992 kb on - strand, within mutY at 602.992 kb on - strand, within mutY at 602.992 kb on - strand, within mutY at 602.992 kb on - strand, within mutY at 602.992 kb on - strand, within mutY at 602.992 kb on - strand, within mutY at 602.992 kb on - strand, within mutY at 603.016 kb on + strand, within mutY at 603.016 kb on + strand, within mutY at 603.016 kb on + strand, within mutY at 603.016 kb on + strand, within mutY at 603.016 kb on + strand, within mutY at 603.016 kb on + strand, within mutY at 603.017 kb on - strand, within mutY at 603.017 kb on - strand, within mutY at 603.017 kb on - strand, within mutY at 603.017 kb on - strand, within mutY at 603.017 kb on - strand, within mutY at 603.017 kb on - strand, within mutY at 603.017 kb on - strand, within mutY at 603.017 kb on - strand, within mutY
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 601,042 + OKGIIK_02550 0.67 -0.6 601,043 - OKGIIK_02550 0.67 -0.8 601,069 - OKGIIK_02550 0.69 -1.2 601,069 - OKGIIK_02550 0.69 -1.9 601,088 + OKGIIK_02550 0.70 -1.1 601,088 + OKGIIK_02550 0.70 +0.2 601,088 + OKGIIK_02550 0.70 +0.5 601,089 - OKGIIK_02550 0.71 -0.2 601,089 - OKGIIK_02550 0.71 +0.3 601,089 - OKGIIK_02550 0.71 -2.8 601,089 - OKGIIK_02550 0.71 -0.2 601,089 - OKGIIK_02550 0.71 -2.6 601,089 - OKGIIK_02550 0.71 -0.7 601,089 - OKGIIK_02550 0.71 +1.1 601,135 + OKGIIK_02550 0.74 -0.5 601,135 + OKGIIK_02550 0.74 -0.8 601,344 - OKGIIK_02550 0.89 +0.1 601,344 - OKGIIK_02550 0.89 -0.5 601,425 + +1.5 601,425 + -0.2 601,426 - -1.8 601,426 - -1.1 601,426 - -0.5 601,426 - -0.4 601,426 - -1.1 601,426 - -0.8 601,426 - -1.0 601,462 + -2.8 601,462 + -0.6 601,462 + -2.3 601,462 + +1.2 601,462 + -0.7 601,462 + -0.9 601,462 + +1.0 601,463 - -0.9 601,500 + +0.4 601,501 - +0.4 601,504 + +0.9 601,504 + +0.2 601,504 + +0.9 601,504 + -0.3 601,505 - +1.7 601,526 + -1.7 601,526 + -0.1 601,526 + +0.9 601,526 + +0.1 601,526 + -0.0 601,526 + -2.9 601,526 + -0.5 601,527 - -2.5 601,527 - +0.4 601,527 - +0.2 601,527 - +0.9 601,527 - -0.6 601,527 - +0.4 601,527 - +0.6 601,528 + -0.8 601,528 + +0.6 601,528 + +0.5 601,529 - -0.4 601,529 - -0.5 601,529 - -2.2 601,529 - +0.5 601,672 + +0.1 601,672 + -1.9 601,672 + +0.8 601,672 + +0.5 601,672 + +0.8 601,672 + +0.9 601,672 + -0.8 601,673 - -0.5 601,673 - -0.9 601,673 - +0.5 601,673 - -0.4 601,673 - +1.8 601,679 + -1.1 601,680 - -0.7 601,693 - -0.7 601,693 - -1.8 601,745 + +0.3 601,745 + -1.5 601,745 + -0.2 601,745 + -2.2 601,745 + -0.3 601,745 + -0.1 601,745 + -1.5 601,745 + +0.5 601,746 - -0.2 601,746 - -0.7 601,746 - -1.3 601,826 + -0.3 601,826 + -0.3 601,826 + -1.7 601,827 - -2.5 601,827 - +1.5 601,842 + -0.4 601,842 + +0.0 601,881 + +0.7 601,882 - +0.3 601,882 - -0.7 601,882 - +0.3 601,928 + -0.2 601,940 - -0.3 601,942 - +1.5 602,195 + yggX OKGIIK_02560 0.30 -1.4 602,195 + yggX OKGIIK_02560 0.30 -0.5 602,195 + yggX OKGIIK_02560 0.30 -0.8 602,195 + yggX OKGIIK_02560 0.30 -1.1 602,195 + yggX OKGIIK_02560 0.30 +0.7 602,196 - yggX OKGIIK_02560 0.31 -0.7 602,196 - yggX OKGIIK_02560 0.31 +0.5 602,196 - yggX OKGIIK_02560 0.31 -1.3 602,196 - yggX OKGIIK_02560 0.31 +0.9 602,232 - yggX OKGIIK_02560 0.44 +0.2 602,232 - yggX OKGIIK_02560 0.44 -2.7 602,287 + yggX OKGIIK_02560 0.63 -2.2 602,288 - yggX OKGIIK_02560 0.64 +0.2 602,297 + yggX OKGIIK_02560 0.67 -0.9 602,297 + yggX OKGIIK_02560 0.67 +0.3 602,297 + yggX OKGIIK_02560 0.67 -1.2 602,297 + yggX OKGIIK_02560 0.67 +0.2 602,297 + yggX OKGIIK_02560 0.67 +0.9 602,297 + yggX OKGIIK_02560 0.67 -2.2 602,297 + yggX OKGIIK_02560 0.67 -0.1 602,297 + yggX OKGIIK_02560 0.67 -0.2 602,297 + yggX OKGIIK_02560 0.67 -0.1 602,297 + yggX OKGIIK_02560 0.67 -1.9 602,297 + yggX OKGIIK_02560 0.67 +0.3 602,298 - yggX OKGIIK_02560 0.67 -1.1 602,298 - yggX OKGIIK_02560 0.67 +0.3 602,298 - yggX OKGIIK_02560 0.67 +0.8 602,298 - yggX OKGIIK_02560 0.67 +0.3 602,298 - yggX OKGIIK_02560 0.67 -0.2 602,298 - yggX OKGIIK_02560 0.67 -0.1 602,298 - yggX OKGIIK_02560 0.67 +0.9 602,490 + -0.1 602,490 + -1.7 602,490 + -0.5 602,490 + -0.3 602,490 + -0.5 602,490 + +0.8 602,578 + -1.3 602,629 + mutY OKGIIK_02565 0.13 -0.2 602,629 + mutY OKGIIK_02565 0.13 -1.1 602,630 - mutY OKGIIK_02565 0.13 -1.3 602,641 - mutY OKGIIK_02565 0.14 -2.3 602,953 + mutY OKGIIK_02565 0.44 +0.1 602,953 + mutY OKGIIK_02565 0.44 -0.8 602,953 + mutY OKGIIK_02565 0.44 -0.3 602,953 + mutY OKGIIK_02565 0.44 -0.2 602,953 + mutY OKGIIK_02565 0.44 -0.4 602,953 + mutY OKGIIK_02565 0.44 +1.5 602,953 + mutY OKGIIK_02565 0.44 -1.8 602,953 + mutY OKGIIK_02565 0.44 +0.9 602,953 + mutY OKGIIK_02565 0.44 -1.3 602,953 + mutY OKGIIK_02565 0.44 -0.5 602,953 + mutY OKGIIK_02565 0.44 +0.5 602,953 + mutY OKGIIK_02565 0.44 -1.0 602,953 + mutY OKGIIK_02565 0.44 +0.7 602,953 + mutY OKGIIK_02565 0.44 -0.7 602,953 + mutY OKGIIK_02565 0.44 +1.1 602,954 - mutY OKGIIK_02565 0.44 -0.7 602,954 - mutY OKGIIK_02565 0.44 -0.2 602,954 - mutY OKGIIK_02565 0.44 -1.4 602,954 - mutY OKGIIK_02565 0.44 -0.1 602,954 - mutY OKGIIK_02565 0.44 -0.7 602,954 - mutY OKGIIK_02565 0.44 -1.3 602,954 - mutY OKGIIK_02565 0.44 +0.7 602,954 - mutY OKGIIK_02565 0.44 +0.9 602,954 - mutY OKGIIK_02565 0.44 -0.4 602,954 - mutY OKGIIK_02565 0.44 -0.5 602,954 - mutY OKGIIK_02565 0.44 -0.4 602,954 - mutY OKGIIK_02565 0.44 -0.4 602,954 - mutY OKGIIK_02565 0.44 +0.5 602,954 - mutY OKGIIK_02565 0.44 -0.8 602,954 - mutY OKGIIK_02565 0.44 -0.9 602,954 - mutY OKGIIK_02565 0.44 -0.8 602,954 - mutY OKGIIK_02565 0.44 -0.1 602,957 + mutY OKGIIK_02565 0.44 -0.1 602,957 + mutY OKGIIK_02565 0.44 -0.8 602,957 + mutY OKGIIK_02565 0.44 +0.1 602,957 + mutY OKGIIK_02565 0.44 +1.1 602,957 + mutY OKGIIK_02565 0.44 +0.3 602,957 + mutY OKGIIK_02565 0.44 -0.3 602,957 + mutY OKGIIK_02565 0.44 -0.7 602,957 + mutY OKGIIK_02565 0.44 +0.4 602,957 + mutY OKGIIK_02565 0.44 +0.5 602,957 + mutY OKGIIK_02565 0.44 -0.1 602,957 + mutY OKGIIK_02565 0.44 -1.2 602,957 + mutY OKGIIK_02565 0.44 +0.1 602,957 + mutY OKGIIK_02565 0.44 -2.7 602,957 + mutY OKGIIK_02565 0.44 -1.9 602,957 + mutY OKGIIK_02565 0.44 +0.1 602,957 + mutY OKGIIK_02565 0.44 +1.1 602,957 + mutY OKGIIK_02565 0.44 -0.8 602,957 + mutY OKGIIK_02565 0.44 -1.7 602,957 + mutY OKGIIK_02565 0.44 -0.8 602,957 + mutY OKGIIK_02565 0.44 -1.2 602,957 + mutY OKGIIK_02565 0.44 -0.3 602,957 + mutY OKGIIK_02565 0.44 -0.3 602,957 + mutY OKGIIK_02565 0.44 +0.5 602,957 + mutY OKGIIK_02565 0.44 +0.3 602,957 + mutY OKGIIK_02565 0.44 +2.1 602,957 + mutY OKGIIK_02565 0.44 -1.1 602,958 - mutY OKGIIK_02565 0.45 -1.7 602,958 - mutY OKGIIK_02565 0.45 -0.3 602,958 - mutY OKGIIK_02565 0.45 -0.2 602,958 - mutY OKGIIK_02565 0.45 -0.3 602,958 - mutY OKGIIK_02565 0.45 -1.1 602,958 - mutY OKGIIK_02565 0.45 -0.1 602,958 - mutY OKGIIK_02565 0.45 -0.8 602,958 - mutY OKGIIK_02565 0.45 +1.1 602,958 - mutY OKGIIK_02565 0.45 +0.1 602,958 - mutY OKGIIK_02565 0.45 +0.0 602,958 - mutY OKGIIK_02565 0.45 +0.3 602,958 - mutY OKGIIK_02565 0.45 -2.5 602,991 + mutY OKGIIK_02565 0.48 -0.8 602,991 + mutY OKGIIK_02565 0.48 +0.2 602,991 + mutY OKGIIK_02565 0.48 -2.2 602,991 + mutY OKGIIK_02565 0.48 +0.7 602,991 + mutY OKGIIK_02565 0.48 +0.9 602,991 + mutY OKGIIK_02565 0.48 -0.9 602,991 + mutY OKGIIK_02565 0.48 +0.2 602,992 - mutY OKGIIK_02565 0.48 -0.8 602,992 - mutY OKGIIK_02565 0.48 -0.8 602,992 - mutY OKGIIK_02565 0.48 +0.3 602,992 - mutY OKGIIK_02565 0.48 -1.7 602,992 - mutY OKGIIK_02565 0.48 -1.4 602,992 - mutY OKGIIK_02565 0.48 +1.1 602,992 - mutY OKGIIK_02565 0.48 -2.1 603,016 + mutY OKGIIK_02565 0.50 +1.0 603,016 + mutY OKGIIK_02565 0.50 -1.7 603,016 + mutY OKGIIK_02565 0.50 -0.6 603,016 + mutY OKGIIK_02565 0.50 +0.8 603,016 + mutY OKGIIK_02565 0.50 -1.2 603,016 + mutY OKGIIK_02565 0.50 +1.0 603,017 - mutY OKGIIK_02565 0.50 -2.7 603,017 - mutY OKGIIK_02565 0.50 +1.1 603,017 - mutY OKGIIK_02565 0.50 +2.3 603,017 - mutY OKGIIK_02565 0.50 +1.3 603,017 - mutY OKGIIK_02565 0.50 -0.1 603,017 - mutY OKGIIK_02565 0.50 -0.7 603,017 - mutY OKGIIK_02565 0.50 +0.6 603,017 - mutY OKGIIK_02565 0.50 -1.5
Or see this region's nucleotide sequence