Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_02315

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_02305 and purN are separated by 34 nucleotidespurN and purM are separated by 35 nucleotidespurM and OKGIIK_02320 are separated by 152 nucleotides OKGIIK_02305: OKGIIK_02305 - DUF3108 domain-containing protein, at 537,073 to 537,780 _02305 OKGIIK_02310: purN - phosphoribosylglycinamide formyltransferase, at 537,815 to 538,453 purN OKGIIK_02315: purM - phosphoribosylformylglycinamidine cyclo-ligase, at 538,489 to 539,517 purM OKGIIK_02320: OKGIIK_02320 - DUF2066 domain-containing protein, at 539,670 to 540,650 _02320 Position (kb) 538 539 540Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 537.489 kb on - strand, within OKGIIK_02305at 537.489 kb on - strand, within OKGIIK_02305at 537.489 kb on - strand, within OKGIIK_02305at 537.489 kb on - strand, within OKGIIK_02305at 537.489 kb on - strand, within OKGIIK_02305at 537.489 kb on - strand, within OKGIIK_02305at 537.494 kb on + strand, within OKGIIK_02305at 537.602 kb on + strand, within OKGIIK_02305at 537.602 kb on + strand, within OKGIIK_02305at 537.602 kb on + strand, within OKGIIK_02305at 537.602 kb on + strand, within OKGIIK_02305at 537.602 kb on + strand, within OKGIIK_02305at 537.602 kb on + strand, within OKGIIK_02305at 537.602 kb on + strand, within OKGIIK_02305at 537.602 kb on + strand, within OKGIIK_02305at 537.602 kb on + strand, within OKGIIK_02305at 537.602 kb on + strand, within OKGIIK_02305at 537.602 kb on + strand, within OKGIIK_02305at 537.602 kb on + strand, within OKGIIK_02305at 537.602 kb on + strand, within OKGIIK_02305at 537.602 kb on + strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.603 kb on - strand, within OKGIIK_02305at 537.673 kb on + strand, within OKGIIK_02305at 537.673 kb on + strand, within OKGIIK_02305at 537.673 kb on + strand, within OKGIIK_02305at 537.673 kb on + strand, within OKGIIK_02305at 537.673 kb on + strand, within OKGIIK_02305at 537.673 kb on + strand, within OKGIIK_02305at 537.673 kb on + strand, within OKGIIK_02305at 537.674 kb on - strand, within OKGIIK_02305at 537.674 kb on - strand, within OKGIIK_02305at 537.674 kb on - strand, within OKGIIK_02305at 537.674 kb on - strand, within OKGIIK_02305at 537.674 kb on - strand, within OKGIIK_02305at 537.680 kb on + strand, within OKGIIK_02305at 537.680 kb on + strand, within OKGIIK_02305at 537.680 kb on + strand, within OKGIIK_02305at 537.680 kb on + strand, within OKGIIK_02305at 537.680 kb on + strand, within OKGIIK_02305at 537.680 kb on + strand, within OKGIIK_02305at 537.680 kb on + strand, within OKGIIK_02305at 537.680 kb on + strand, within OKGIIK_02305at 537.680 kb on + strand, within OKGIIK_02305at 537.680 kb on + strand, within OKGIIK_02305at 537.680 kb on + strand, within OKGIIK_02305at 537.680 kb on + strand, within OKGIIK_02305at 537.680 kb on + strand, within OKGIIK_02305at 537.680 kb on + strand, within OKGIIK_02305at 537.680 kb on + strand, within OKGIIK_02305at 537.681 kb on - strand, within OKGIIK_02305at 537.681 kb on - strand, within OKGIIK_02305at 537.681 kb on - strand, within OKGIIK_02305at 537.681 kb on - strand, within OKGIIK_02305at 537.681 kb on - strand, within OKGIIK_02305at 537.681 kb on - strand, within OKGIIK_02305at 537.681 kb on - strand, within OKGIIK_02305at 537.681 kb on - strand, within OKGIIK_02305at 537.681 kb on - strand, within OKGIIK_02305at 537.681 kb on - strand, within OKGIIK_02305at 537.681 kb on - strand, within OKGIIK_02305at 537.681 kb on - strand, within OKGIIK_02305at 537.775 kb on - strandat 537.775 kb on - strandat 537.816 kb on + strandat 537.816 kb on + strandat 537.816 kb on + strandat 537.816 kb on + strandat 537.816 kb on + strandat 537.817 kb on - strandat 537.817 kb on - strandat 538.108 kb on + strand, within purNat 538.108 kb on + strand, within purNat 538.108 kb on + strand, within purNat 538.109 kb on - strand, within purNat 538.109 kb on - strand, within purNat 538.109 kb on - strand, within purNat 538.122 kb on + strand, within purNat 538.123 kb on - strand, within purNat 538.284 kb on + strand, within purNat 538.285 kb on - strand, within purNat 538.497 kb on + strandat 538.830 kb on + strand, within purMat 538.830 kb on + strand, within purMat 538.831 kb on - strand, within purMat 538.841 kb on + strand, within purMat 538.841 kb on + strand, within purMat 538.842 kb on - strand, within purMat 538.842 kb on - strand, within purMat 538.936 kb on + strand, within purMat 539.063 kb on + strand, within purMat 539.078 kb on + strand, within purMat 539.079 kb on - strand, within purMat 539.079 kb on - strand, within purMat 539.079 kb on - strand, within purMat 539.079 kb on - strand, within purMat 539.079 kb on - strand, within purMat 539.498 kb on + strandat 539.551 kb on + strandat 539.660 kb on + strandat 539.660 kb on + strandat 539.757 kb on + strandat 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.881 kb on - strand, within OKGIIK_02320at 539.881 kb on - strand, within OKGIIK_02320at 539.953 kb on + strand, within OKGIIK_02320at 539.954 kb on - strand, within OKGIIK_02320at 540.216 kb on + strand, within OKGIIK_02320at 540.444 kb on + strand, within OKGIIK_02320at 540.444 kb on + strand, within OKGIIK_02320at 540.444 kb on + strand, within OKGIIK_02320at 540.445 kb on - strand, within OKGIIK_02320at 540.445 kb on - strand, within OKGIIK_02320at 540.445 kb on - strand, within OKGIIK_02320at 540.445 kb on - strand, within OKGIIK_02320at 540.445 kb on - strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM
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537,489 - OKGIIK_02305 0.59 +0.5
537,489 - OKGIIK_02305 0.59 -2.2
537,489 - OKGIIK_02305 0.59 -1.1
537,489 - OKGIIK_02305 0.59 -1.3
537,489 - OKGIIK_02305 0.59 -1.3
537,489 - OKGIIK_02305 0.59 -1.6
537,494 + OKGIIK_02305 0.59 -1.4
537,602 + OKGIIK_02305 0.75 +0.5
537,602 + OKGIIK_02305 0.75 -3.8
537,602 + OKGIIK_02305 0.75 -0.8
537,602 + OKGIIK_02305 0.75 -1.3
537,602 + OKGIIK_02305 0.75 -0.7
537,602 + OKGIIK_02305 0.75 -1.1
537,602 + OKGIIK_02305 0.75 +0.2
537,602 + OKGIIK_02305 0.75 +0.7
537,602 + OKGIIK_02305 0.75 -0.3
537,602 + OKGIIK_02305 0.75 -0.8
537,602 + OKGIIK_02305 0.75 -0.7
537,602 + OKGIIK_02305 0.75 -0.8
537,602 + OKGIIK_02305 0.75 -1.1
537,602 + OKGIIK_02305 0.75 -1.7
537,603 - OKGIIK_02305 0.75 +0.5
537,603 - OKGIIK_02305 0.75 +1.2
537,603 - OKGIIK_02305 0.75 -1.1
537,603 - OKGIIK_02305 0.75 -1.5
537,603 - OKGIIK_02305 0.75 +0.9
537,603 - OKGIIK_02305 0.75 -1.7
537,603 - OKGIIK_02305 0.75 -1.1
537,603 - OKGIIK_02305 0.75 +0.2
537,603 - OKGIIK_02305 0.75 +0.5
537,603 - OKGIIK_02305 0.75 -1.8
537,603 - OKGIIK_02305 0.75 +1.1
537,603 - OKGIIK_02305 0.75 -0.7
537,603 - OKGIIK_02305 0.75 -0.2
537,603 - OKGIIK_02305 0.75 +1.5
537,603 - OKGIIK_02305 0.75 -1.8
537,603 - OKGIIK_02305 0.75 +0.3
537,603 - OKGIIK_02305 0.75 -1.7
537,603 - OKGIIK_02305 0.75 -0.7
537,673 + OKGIIK_02305 0.85 -1.2
537,673 + OKGIIK_02305 0.85 +0.1
537,673 + OKGIIK_02305 0.85 -0.1
537,673 + OKGIIK_02305 0.85 -2.6
537,673 + OKGIIK_02305 0.85 +0.7
537,673 + OKGIIK_02305 0.85 -0.1
537,673 + OKGIIK_02305 0.85 -0.9
537,674 - OKGIIK_02305 0.85 -0.1
537,674 - OKGIIK_02305 0.85 -0.2
537,674 - OKGIIK_02305 0.85 +0.0
537,674 - OKGIIK_02305 0.85 -0.5
537,674 - OKGIIK_02305 0.85 -1.7
537,680 + OKGIIK_02305 0.86 -0.1
537,680 + OKGIIK_02305 0.86 -0.8
537,680 + OKGIIK_02305 0.86 -0.4
537,680 + OKGIIK_02305 0.86 -0.2
537,680 + OKGIIK_02305 0.86 -0.2
537,680 + OKGIIK_02305 0.86 +1.1
537,680 + OKGIIK_02305 0.86 -0.4
537,680 + OKGIIK_02305 0.86 -1.3
537,680 + OKGIIK_02305 0.86 -1.1
537,680 + OKGIIK_02305 0.86 -1.5
537,680 + OKGIIK_02305 0.86 -0.5
537,680 + OKGIIK_02305 0.86 +0.2
537,680 + OKGIIK_02305 0.86 -1.7
537,680 + OKGIIK_02305 0.86 +0.5
537,680 + OKGIIK_02305 0.86 +0.0
537,681 - OKGIIK_02305 0.86 -0.5
537,681 - OKGIIK_02305 0.86 -1.2
537,681 - OKGIIK_02305 0.86 -0.2
537,681 - OKGIIK_02305 0.86 +0.7
537,681 - OKGIIK_02305 0.86 +0.1
537,681 - OKGIIK_02305 0.86 -0.0
537,681 - OKGIIK_02305 0.86 -1.6
537,681 - OKGIIK_02305 0.86 -0.5
537,681 - OKGIIK_02305 0.86 -0.5
537,681 - OKGIIK_02305 0.86 -0.5
537,681 - OKGIIK_02305 0.86 +0.5
537,681 - OKGIIK_02305 0.86 -2.2
537,775 - -1.8
537,775 - -1.2
537,816 + -0.2
537,816 + +0.1
537,816 + -0.3
537,816 + -0.2
537,816 + -0.1
537,817 - -0.8
537,817 - +1.5
538,108 + purN OKGIIK_02310 0.46 -2.3
538,108 + purN OKGIIK_02310 0.46 +0.3
538,108 + purN OKGIIK_02310 0.46 -0.5
538,109 - purN OKGIIK_02310 0.46 -1.2
538,109 - purN OKGIIK_02310 0.46 +0.2
538,109 - purN OKGIIK_02310 0.46 -1.7
538,122 + purN OKGIIK_02310 0.48 -0.7
538,123 - purN OKGIIK_02310 0.48 -0.4
538,284 + purN OKGIIK_02310 0.73 +0.4
538,285 - purN OKGIIK_02310 0.74 -0.6
538,497 + -1.1
538,830 + purM OKGIIK_02315 0.33 -2.7
538,830 + purM OKGIIK_02315 0.33 -2.4
538,831 - purM OKGIIK_02315 0.33 -0.5
538,841 + purM OKGIIK_02315 0.34 -2.5
538,841 + purM OKGIIK_02315 0.34 -0.5
538,842 - purM OKGIIK_02315 0.34 -1.3
538,842 - purM OKGIIK_02315 0.34 -1.1
538,936 + purM OKGIIK_02315 0.43 -1.1
539,063 + purM OKGIIK_02315 0.56 -2.6
539,078 + purM OKGIIK_02315 0.57 -0.8
539,079 - purM OKGIIK_02315 0.57 +0.9
539,079 - purM OKGIIK_02315 0.57 -0.8
539,079 - purM OKGIIK_02315 0.57 -1.8
539,079 - purM OKGIIK_02315 0.57 -1.3
539,079 - purM OKGIIK_02315 0.57 -1.1
539,498 + -1.7
539,551 + +0.9
539,660 + +0.2
539,660 + -2.4
539,757 + -0.7
539,875 + OKGIIK_02320 0.21 +0.7
539,875 + OKGIIK_02320 0.21 -1.3
539,875 + OKGIIK_02320 0.21 -0.1
539,875 + OKGIIK_02320 0.21 +0.8
539,875 + OKGIIK_02320 0.21 -0.5
539,875 + OKGIIK_02320 0.21 +0.3
539,875 + OKGIIK_02320 0.21 -1.4
539,875 + OKGIIK_02320 0.21 -0.2
539,875 + OKGIIK_02320 0.21 -0.1
539,875 + OKGIIK_02320 0.21 -0.5
539,875 + OKGIIK_02320 0.21 -2.8
539,875 + OKGIIK_02320 0.21 -0.8
539,876 - OKGIIK_02320 0.21 +0.1
539,876 - OKGIIK_02320 0.21 -0.5
539,876 - OKGIIK_02320 0.21 +0.3
539,876 - OKGIIK_02320 0.21 -0.1
539,876 - OKGIIK_02320 0.21 +0.2
539,876 - OKGIIK_02320 0.21 +0.0
539,876 - OKGIIK_02320 0.21 +0.5
539,876 - OKGIIK_02320 0.21 +0.1
539,876 - OKGIIK_02320 0.21 +0.4
539,876 - OKGIIK_02320 0.21 -0.2
539,876 - OKGIIK_02320 0.21 -0.8
539,876 - OKGIIK_02320 0.21 -1.1
539,876 - OKGIIK_02320 0.21 -1.7
539,876 - OKGIIK_02320 0.21 -0.1
539,876 - OKGIIK_02320 0.21 +1.2
539,876 - OKGIIK_02320 0.21 -0.2
539,876 - OKGIIK_02320 0.21 +1.2
539,881 - OKGIIK_02320 0.22 -0.5
539,881 - OKGIIK_02320 0.22 -1.3
539,953 + OKGIIK_02320 0.29 -2.1
539,954 - OKGIIK_02320 0.29 -1.7
540,216 + OKGIIK_02320 0.56 -0.5
540,444 + OKGIIK_02320 0.79 -0.7
540,444 + OKGIIK_02320 0.79 -1.3
540,444 + OKGIIK_02320 0.79 -0.4
540,445 - OKGIIK_02320 0.79 -1.2
540,445 - OKGIIK_02320 0.79 +1.5
540,445 - OKGIIK_02320 0.79 -1.3
540,445 - OKGIIK_02320 0.79 -1.7
540,445 - OKGIIK_02320 0.79 -1.5
540,493 + OKGIIK_02320 0.84 +0.2
540,493 + OKGIIK_02320 0.84 -1.5
540,493 + OKGIIK_02320 0.84 +0.6
540,493 + OKGIIK_02320 0.84 -1.2
540,493 + OKGIIK_02320 0.84 -0.2
540,493 + OKGIIK_02320 0.84 -0.5
540,493 + OKGIIK_02320 0.84 -1.1
540,493 + OKGIIK_02320 0.84 +1.0
540,494 - OKGIIK_02320 0.84 +0.5
540,494 - OKGIIK_02320 0.84 -1.1
540,494 - OKGIIK_02320 0.84 -1.7
540,494 - OKGIIK_02320 0.84 -0.3
540,494 - OKGIIK_02320 0.84 -0.5
540,494 - OKGIIK_02320 0.84 -0.6
540,494 - OKGIIK_02320 0.84 -0.6
540,494 - OKGIIK_02320 0.84 +0.2
540,494 - OKGIIK_02320 0.84 -0.1

Or see this region's nucleotide sequence