Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02160 and OKGIIK_02165 are separated by 99 nucleotides OKGIIK_02165 and relA are separated by 107 nucleotides relA and OKGIIK_02175 are separated by 86 nucleotides
OKGIIK_02160: OKGIIK_02160 - hypothetical protein, at 507,139 to 507,618
_02160
OKGIIK_02165: OKGIIK_02165 - hypothetical protein, at 507,718 to 508,266
_02165
OKGIIK_02170: relA - GTP diphosphokinase, at 508,374 to 510,515
relA
OKGIIK_02175: OKGIIK_02175 - hypothetical protein, at 510,602 to 512,281
_02175
Position (kb) 508
509
510
511 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 507.379 kb on - strand, within OKGIIK_02160 at 507.379 kb on - strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.752 kb on + strand at 507.752 kb on + strand at 507.752 kb on + strand at 507.752 kb on + strand at 507.752 kb on + strand at 507.752 kb on + strand at 507.753 kb on - strand at 507.753 kb on - strand at 507.753 kb on - strand at 507.753 kb on - strand at 507.753 kb on - strand at 507.753 kb on - strand at 507.753 kb on - strand at 507.753 kb on - strand at 507.753 kb on - strand at 507.753 kb on - strand at 508.048 kb on + strand, within OKGIIK_02165 at 508.255 kb on + strand at 508.255 kb on + strand at 508.255 kb on + strand at 508.255 kb on + strand at 508.255 kb on + strand at 508.255 kb on + strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.277 kb on + strand at 508.278 kb on - strand at 508.278 kb on - strand at 508.278 kb on - strand at 508.316 kb on + strand at 508.316 kb on + strand at 508.316 kb on + strand at 508.317 kb on - strand at 508.317 kb on - strand at 508.381 kb on + strand at 508.381 kb on + strand at 508.381 kb on + strand at 508.381 kb on + strand at 508.381 kb on + strand at 508.381 kb on + strand at 508.381 kb on + strand at 508.382 kb on - strand at 508.382 kb on - strand at 508.382 kb on - strand at 508.382 kb on - strand at 508.382 kb on - strand at 508.672 kb on + strand, within relA at 508.672 kb on + strand, within relA at 508.672 kb on + strand, within relA at 508.672 kb on + strand, within relA at 508.673 kb on - strand, within relA at 508.673 kb on - strand, within relA at 508.673 kb on - strand, within relA at 508.673 kb on - strand, within relA at 508.886 kb on + strand, within relA at 508.929 kb on + strand, within relA at 508.930 kb on - strand, within relA at 508.930 kb on - strand, within relA at 508.930 kb on - strand, within relA at 508.947 kb on + strand, within relA at 508.947 kb on + strand, within relA at 508.947 kb on + strand, within relA at 508.947 kb on + strand, within relA at 508.947 kb on + strand, within relA at 508.948 kb on - strand, within relA at 508.948 kb on - strand, within relA at 509.085 kb on + strand, within relA at 509.085 kb on + strand, within relA at 509.085 kb on + strand, within relA at 509.085 kb on + strand, within relA at 509.085 kb on + strand, within relA at 509.085 kb on + strand, within relA at 509.085 kb on + strand, within relA at 509.085 kb on + strand, within relA at 509.085 kb on + strand, within relA at 509.085 kb on + strand, within relA at 509.085 kb on + strand, within relA at 509.085 kb on + strand, within relA at 509.086 kb on - strand, within relA at 509.086 kb on - strand, within relA at 509.086 kb on - strand, within relA at 509.086 kb on - strand, within relA at 509.086 kb on - strand, within relA at 509.086 kb on - strand, within relA at 509.086 kb on - strand, within relA at 509.086 kb on - strand, within relA at 509.086 kb on - strand, within relA at 509.086 kb on - strand, within relA at 509.086 kb on - strand, within relA at 509.086 kb on - strand, within relA at 509.086 kb on - strand, within relA at 509.086 kb on - strand, within relA at 509.086 kb on - strand, within relA at 509.086 kb on - strand, within relA at 509.086 kb on - strand, within relA at 509.136 kb on + strand, within relA at 509.136 kb on + strand, within relA at 509.136 kb on + strand, within relA at 509.136 kb on + strand, within relA at 509.137 kb on - strand, within relA at 509.137 kb on - strand, within relA at 509.137 kb on - strand, within relA at 509.137 kb on - strand, within relA at 509.137 kb on - strand, within relA at 509.184 kb on + strand, within relA at 509.184 kb on + strand, within relA at 509.184 kb on + strand, within relA at 509.184 kb on + strand, within relA at 509.185 kb on - strand, within relA at 509.244 kb on + strand, within relA at 509.244 kb on + strand, within relA at 509.244 kb on + strand, within relA at 509.244 kb on + strand, within relA at 509.244 kb on + strand, within relA at 509.244 kb on + strand, within relA at 509.244 kb on + strand, within relA at 509.244 kb on + strand, within relA at 509.244 kb on + strand, within relA at 509.244 kb on + strand, within relA at 509.244 kb on + strand, within relA at 509.244 kb on + strand, within relA at 509.244 kb on + strand, within relA at 509.244 kb on + strand, within relA at 509.245 kb on - strand, within relA at 509.245 kb on - strand, within relA at 509.245 kb on - strand, within relA at 509.245 kb on - strand, within relA at 509.245 kb on - strand, within relA at 509.245 kb on - strand, within relA at 509.245 kb on - strand, within relA at 509.245 kb on - strand, within relA at 509.245 kb on - strand, within relA at 509.245 kb on - strand, within relA at 509.245 kb on - strand, within relA at 509.271 kb on + strand, within relA at 509.272 kb on - strand, within relA at 509.285 kb on + strand, within relA at 509.286 kb on - strand, within relA at 509.286 kb on - strand, within relA at 509.286 kb on - strand, within relA at 509.385 kb on + strand, within relA at 509.385 kb on + strand, within relA at 509.386 kb on - strand, within relA at 509.386 kb on - strand, within relA at 509.471 kb on + strand, within relA at 509.471 kb on + strand, within relA at 509.471 kb on + strand, within relA at 509.471 kb on + strand, within relA at 509.471 kb on + strand, within relA at 509.472 kb on - strand, within relA at 509.472 kb on - strand, within relA at 509.520 kb on + strand, within relA at 509.520 kb on + strand, within relA at 509.520 kb on + strand, within relA at 509.521 kb on - strand, within relA at 509.521 kb on - strand, within relA at 509.586 kb on + strand, within relA at 509.586 kb on + strand, within relA at 509.587 kb on - strand, within relA at 509.587 kb on - strand, within relA at 509.587 kb on - strand, within relA at 509.745 kb on + strand, within relA at 509.745 kb on + strand, within relA at 509.746 kb on - strand, within relA at 509.746 kb on - strand, within relA at 509.746 kb on - strand, within relA at 509.746 kb on - strand, within relA at 510.273 kb on + strand, within relA at 510.274 kb on - strand, within relA at 510.274 kb on - strand, within relA at 510.300 kb on + strand, within relA at 510.301 kb on - strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 511.210 kb on - strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.260 kb on - strand, within OKGIIK_02175
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 507,379 - OKGIIK_02160 0.50 +0.5 507,379 - OKGIIK_02160 0.50 +2.1 507,380 + OKGIIK_02160 0.50 +2.2 507,380 + OKGIIK_02160 0.50 -0.3 507,380 + OKGIIK_02160 0.50 +0.7 507,380 + OKGIIK_02160 0.50 -0.5 507,380 + OKGIIK_02160 0.50 -1.8 507,380 + OKGIIK_02160 0.50 +0.5 507,380 + OKGIIK_02160 0.50 -0.3 507,380 + OKGIIK_02160 0.50 +1.1 507,380 + OKGIIK_02160 0.50 -2.2 507,380 + OKGIIK_02160 0.50 -1.1 507,380 + OKGIIK_02160 0.50 +0.7 507,380 + OKGIIK_02160 0.50 +1.5 507,380 + OKGIIK_02160 0.50 -0.8 507,380 + OKGIIK_02160 0.50 +0.1 507,380 + OKGIIK_02160 0.50 +0.1 507,380 + OKGIIK_02160 0.50 -1.1 507,380 + OKGIIK_02160 0.50 +0.2 507,380 + OKGIIK_02160 0.50 -0.5 507,380 + OKGIIK_02160 0.50 +1.5 507,380 + OKGIIK_02160 0.50 -0.8 507,381 - OKGIIK_02160 0.50 -0.7 507,381 - OKGIIK_02160 0.50 -0.8 507,381 - OKGIIK_02160 0.50 -0.3 507,381 - OKGIIK_02160 0.50 +0.1 507,381 - OKGIIK_02160 0.50 -0.7 507,381 - OKGIIK_02160 0.50 +0.0 507,381 - OKGIIK_02160 0.50 -1.8 507,381 - OKGIIK_02160 0.50 +0.5 507,381 - OKGIIK_02160 0.50 -0.7 507,381 - OKGIIK_02160 0.50 -0.5 507,381 - OKGIIK_02160 0.50 +0.5 507,381 - OKGIIK_02160 0.50 +1.5 507,381 - OKGIIK_02160 0.50 -2.4 507,752 + -1.1 507,752 + +0.1 507,752 + +0.7 507,752 + +1.5 507,752 + -0.5 507,752 + +0.4 507,753 - -0.4 507,753 - +0.5 507,753 - -0.6 507,753 - -1.1 507,753 - -0.5 507,753 - +0.3 507,753 - -0.0 507,753 - +2.2 507,753 - -0.1 507,753 - +0.6 508,048 + OKGIIK_02165 0.60 -0.9 508,255 + +1.5 508,255 + -1.1 508,255 + -0.3 508,255 + -0.1 508,255 + -0.7 508,255 + -0.7 508,256 - +1.1 508,256 - +1.2 508,256 - +0.3 508,256 - -0.3 508,256 - -0.8 508,256 - -0.3 508,256 - -0.3 508,256 - -0.8 508,256 - -0.1 508,256 - -0.5 508,277 + -0.7 508,278 - -0.8 508,278 - -0.5 508,278 - +0.6 508,316 + +0.6 508,316 + -0.1 508,316 + -0.2 508,317 - +0.7 508,317 - -1.8 508,381 + -0.1 508,381 + -0.2 508,381 + +1.1 508,381 + +1.7 508,381 + -1.5 508,381 + -0.5 508,381 + +0.2 508,382 - +0.0 508,382 - -0.0 508,382 - +1.3 508,382 - -1.3 508,382 - -0.2 508,672 + relA OKGIIK_02170 0.14 +0.0 508,672 + relA OKGIIK_02170 0.14 +1.2 508,672 + relA OKGIIK_02170 0.14 -0.1 508,672 + relA OKGIIK_02170 0.14 +0.2 508,673 - relA OKGIIK_02170 0.14 -0.8 508,673 - relA OKGIIK_02170 0.14 -0.5 508,673 - relA OKGIIK_02170 0.14 +0.2 508,673 - relA OKGIIK_02170 0.14 -0.0 508,886 + relA OKGIIK_02170 0.24 -0.3 508,929 + relA OKGIIK_02170 0.26 -0.8 508,930 - relA OKGIIK_02170 0.26 +0.7 508,930 - relA OKGIIK_02170 0.26 -2.8 508,930 - relA OKGIIK_02170 0.26 +0.1 508,947 + relA OKGIIK_02170 0.27 -0.5 508,947 + relA OKGIIK_02170 0.27 -1.0 508,947 + relA OKGIIK_02170 0.27 -1.1 508,947 + relA OKGIIK_02170 0.27 -2.4 508,947 + relA OKGIIK_02170 0.27 -2.5 508,948 - relA OKGIIK_02170 0.27 -1.5 508,948 - relA OKGIIK_02170 0.27 -1.0 509,085 + relA OKGIIK_02170 0.33 -0.7 509,085 + relA OKGIIK_02170 0.33 -1.7 509,085 + relA OKGIIK_02170 0.33 -0.8 509,085 + relA OKGIIK_02170 0.33 -0.3 509,085 + relA OKGIIK_02170 0.33 -1.3 509,085 + relA OKGIIK_02170 0.33 -0.1 509,085 + relA OKGIIK_02170 0.33 -1.1 509,085 + relA OKGIIK_02170 0.33 -0.8 509,085 + relA OKGIIK_02170 0.33 -2.3 509,085 + relA OKGIIK_02170 0.33 -0.8 509,085 + relA OKGIIK_02170 0.33 -1.1 509,085 + relA OKGIIK_02170 0.33 +0.7 509,086 - relA OKGIIK_02170 0.33 -0.5 509,086 - relA OKGIIK_02170 0.33 +1.1 509,086 - relA OKGIIK_02170 0.33 -1.3 509,086 - relA OKGIIK_02170 0.33 -1.1 509,086 - relA OKGIIK_02170 0.33 +0.1 509,086 - relA OKGIIK_02170 0.33 -0.5 509,086 - relA OKGIIK_02170 0.33 -1.1 509,086 - relA OKGIIK_02170 0.33 -0.1 509,086 - relA OKGIIK_02170 0.33 -0.8 509,086 - relA OKGIIK_02170 0.33 -1.1 509,086 - relA OKGIIK_02170 0.33 -2.0 509,086 - relA OKGIIK_02170 0.33 -1.1 509,086 - relA OKGIIK_02170 0.33 -0.6 509,086 - relA OKGIIK_02170 0.33 +0.2 509,086 - relA OKGIIK_02170 0.33 -0.8 509,086 - relA OKGIIK_02170 0.33 -1.1 509,086 - relA OKGIIK_02170 0.33 -0.7 509,136 + relA OKGIIK_02170 0.36 -0.8 509,136 + relA OKGIIK_02170 0.36 -0.5 509,136 + relA OKGIIK_02170 0.36 -0.5 509,136 + relA OKGIIK_02170 0.36 -1.0 509,137 - relA OKGIIK_02170 0.36 +2.1 509,137 - relA OKGIIK_02170 0.36 -0.5 509,137 - relA OKGIIK_02170 0.36 -1.8 509,137 - relA OKGIIK_02170 0.36 +0.0 509,137 - relA OKGIIK_02170 0.36 -2.9 509,184 + relA OKGIIK_02170 0.38 -1.3 509,184 + relA OKGIIK_02170 0.38 -1.7 509,184 + relA OKGIIK_02170 0.38 -1.1 509,184 + relA OKGIIK_02170 0.38 +1.2 509,185 - relA OKGIIK_02170 0.38 +0.8 509,244 + relA OKGIIK_02170 0.41 +1.1 509,244 + relA OKGIIK_02170 0.41 +0.1 509,244 + relA OKGIIK_02170 0.41 +1.8 509,244 + relA OKGIIK_02170 0.41 +0.3 509,244 + relA OKGIIK_02170 0.41 +0.2 509,244 + relA OKGIIK_02170 0.41 -1.3 509,244 + relA OKGIIK_02170 0.41 -1.3 509,244 + relA OKGIIK_02170 0.41 -1.1 509,244 + relA OKGIIK_02170 0.41 +0.4 509,244 + relA OKGIIK_02170 0.41 -1.1 509,244 + relA OKGIIK_02170 0.41 -1.2 509,244 + relA OKGIIK_02170 0.41 -1.3 509,244 + relA OKGIIK_02170 0.41 -0.8 509,244 + relA OKGIIK_02170 0.41 -2.4 509,245 - relA OKGIIK_02170 0.41 -2.3 509,245 - relA OKGIIK_02170 0.41 -0.3 509,245 - relA OKGIIK_02170 0.41 -1.8 509,245 - relA OKGIIK_02170 0.41 +1.1 509,245 - relA OKGIIK_02170 0.41 +0.3 509,245 - relA OKGIIK_02170 0.41 -0.1 509,245 - relA OKGIIK_02170 0.41 -0.8 509,245 - relA OKGIIK_02170 0.41 -1.0 509,245 - relA OKGIIK_02170 0.41 +0.7 509,245 - relA OKGIIK_02170 0.41 -2.0 509,245 - relA OKGIIK_02170 0.41 -0.8 509,271 + relA OKGIIK_02170 0.42 -0.4 509,272 - relA OKGIIK_02170 0.42 -0.5 509,285 + relA OKGIIK_02170 0.43 -1.5 509,286 - relA OKGIIK_02170 0.43 -0.1 509,286 - relA OKGIIK_02170 0.43 -1.7 509,286 - relA OKGIIK_02170 0.43 -1.5 509,385 + relA OKGIIK_02170 0.47 +0.1 509,385 + relA OKGIIK_02170 0.47 -1.5 509,386 - relA OKGIIK_02170 0.47 +0.7 509,386 - relA OKGIIK_02170 0.47 -1.1 509,471 + relA OKGIIK_02170 0.51 -1.3 509,471 + relA OKGIIK_02170 0.51 -0.8 509,471 + relA OKGIIK_02170 0.51 -0.4 509,471 + relA OKGIIK_02170 0.51 -0.6 509,471 + relA OKGIIK_02170 0.51 -0.5 509,472 - relA OKGIIK_02170 0.51 +0.5 509,472 - relA OKGIIK_02170 0.51 -0.7 509,520 + relA OKGIIK_02170 0.54 -0.5 509,520 + relA OKGIIK_02170 0.54 +0.7 509,520 + relA OKGIIK_02170 0.54 -0.8 509,521 - relA OKGIIK_02170 0.54 +0.3 509,521 - relA OKGIIK_02170 0.54 +1.1 509,586 + relA OKGIIK_02170 0.57 -1.1 509,586 + relA OKGIIK_02170 0.57 -0.5 509,587 - relA OKGIIK_02170 0.57 -0.5 509,587 - relA OKGIIK_02170 0.57 +0.2 509,587 - relA OKGIIK_02170 0.57 -0.5 509,745 + relA OKGIIK_02170 0.64 -0.4 509,745 + relA OKGIIK_02170 0.64 -1.7 509,746 - relA OKGIIK_02170 0.64 -0.4 509,746 - relA OKGIIK_02170 0.64 -2.3 509,746 - relA OKGIIK_02170 0.64 -1.3 509,746 - relA OKGIIK_02170 0.64 -0.0 510,273 + relA OKGIIK_02170 0.89 +0.1 510,274 - relA OKGIIK_02170 0.89 -0.8 510,274 - relA OKGIIK_02170 0.89 -0.6 510,300 + relA OKGIIK_02170 0.90 -0.8 510,301 - -0.4 510,568 + +0.0 510,568 + +0.1 510,568 + +0.2 510,568 + +0.4 510,569 - -0.8 510,569 - -0.7 510,569 - +0.1 510,569 - -0.1 511,210 - OKGIIK_02175 0.36 -0.8 511,259 + OKGIIK_02175 0.39 -0.5 511,259 + OKGIIK_02175 0.39 +0.7 511,259 + OKGIIK_02175 0.39 -0.6 511,259 + OKGIIK_02175 0.39 +0.4 511,259 + OKGIIK_02175 0.39 +1.5 511,259 + OKGIIK_02175 0.39 +2.5 511,260 - OKGIIK_02175 0.39 -1.1
Or see this region's nucleotide sequence