Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02065 and OKGIIK_02070 are separated by 23 nucleotides OKGIIK_02070 and sET are separated by 300 nucleotides sET and fusA are separated by 30 nucleotides
OKGIIK_02065: OKGIIK_02065 - acyl-CoA dehydrogenase, at 476,940 to 478,730
_02065
OKGIIK_02070: OKGIIK_02070 - hypothetical protein, at 478,754 to 479,230
_02070
OKGIIK_02075: sET - SET domain-containing protein-lysine N-methyltransferase, at 479,531 to 479,998
sET
OKGIIK_02080: fusA - elongation factor G, at 480,029 to 482,068
fusA
Position (kb) 478
479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 477.760 kb on + strand, within OKGIIK_02065 at 477.760 kb on + strand, within OKGIIK_02065 at 477.760 kb on + strand, within OKGIIK_02065 at 477.760 kb on + strand, within OKGIIK_02065 at 477.760 kb on + strand, within OKGIIK_02065 at 477.760 kb on + strand, within OKGIIK_02065 at 477.761 kb on - strand, within OKGIIK_02065 at 477.761 kb on - strand, within OKGIIK_02065 at 477.761 kb on - strand, within OKGIIK_02065 at 477.883 kb on + strand, within OKGIIK_02065 at 477.883 kb on + strand, within OKGIIK_02065 at 477.883 kb on + strand, within OKGIIK_02065 at 477.884 kb on - strand, within OKGIIK_02065 at 477.884 kb on - strand, within OKGIIK_02065 at 477.884 kb on - strand, within OKGIIK_02065 at 477.884 kb on - strand, within OKGIIK_02065 at 478.144 kb on + strand, within OKGIIK_02065 at 478.145 kb on - strand, within OKGIIK_02065 at 478.145 kb on - strand, within OKGIIK_02065 at 478.145 kb on - strand, within OKGIIK_02065 at 478.145 kb on - strand, within OKGIIK_02065 at 478.145 kb on - strand, within OKGIIK_02065 at 478.426 kb on + strand, within OKGIIK_02065 at 478.720 kb on + strand at 478.720 kb on + strand at 478.720 kb on + strand at 478.720 kb on + strand at 478.720 kb on + strand at 478.720 kb on + strand at 478.720 kb on + strand at 478.720 kb on + strand at 478.720 kb on + strand at 478.720 kb on + strand at 478.720 kb on + strand at 478.720 kb on + strand at 478.720 kb on + strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.761 kb on + strand at 478.761 kb on + strand at 478.761 kb on + strand at 478.761 kb on + strand at 478.761 kb on + strand at 478.761 kb on + strand at 478.761 kb on + strand at 478.761 kb on + strand at 478.761 kb on + strand at 478.762 kb on - strand at 478.762 kb on - strand at 478.873 kb on - strand, within OKGIIK_02070 at 478.937 kb on - strand, within OKGIIK_02070 at 478.937 kb on - strand, within OKGIIK_02070 at 478.937 kb on - strand, within OKGIIK_02070 at 478.937 kb on - strand, within OKGIIK_02070 at 479.070 kb on + strand, within OKGIIK_02070 at 479.154 kb on + strand, within OKGIIK_02070 at 479.154 kb on + strand, within OKGIIK_02070 at 479.155 kb on - strand, within OKGIIK_02070 at 479.257 kb on + strand at 479.266 kb on + strand at 479.266 kb on + strand at 479.266 kb on + strand at 479.267 kb on - strand at 479.267 kb on - strand at 479.294 kb on + strand at 479.294 kb on + strand at 479.294 kb on + strand at 479.295 kb on - strand at 479.422 kb on + strand at 479.624 kb on + strand, within sET at 479.624 kb on + strand, within sET at 479.624 kb on + strand, within sET at 479.624 kb on + strand, within sET at 479.625 kb on - strand, within sET at 479.625 kb on - strand, within sET at 479.625 kb on - strand, within sET at 479.625 kb on - strand, within sET at 479.625 kb on - strand, within sET at 479.625 kb on - strand, within sET at 479.625 kb on - strand, within sET at 479.625 kb on - strand, within sET at 479.666 kb on + strand, within sET at 479.666 kb on + strand, within sET at 479.720 kb on + strand, within sET at 479.720 kb on + strand, within sET at 479.720 kb on + strand, within sET at 479.720 kb on + strand, within sET at 479.720 kb on + strand, within sET at 479.720 kb on + strand, within sET at 479.720 kb on + strand, within sET at 479.720 kb on + strand, within sET at 479.720 kb on + strand, within sET at 479.720 kb on + strand, within sET at 479.720 kb on + strand, within sET at 479.721 kb on - strand, within sET at 479.721 kb on - strand, within sET at 479.721 kb on - strand, within sET at 479.721 kb on - strand, within sET at 479.721 kb on - strand, within sET at 479.721 kb on - strand, within sET at 479.885 kb on + strand, within sET at 479.885 kb on + strand, within sET at 479.885 kb on + strand, within sET at 479.885 kb on + strand, within sET at 479.885 kb on + strand, within sET at 479.885 kb on + strand, within sET at 479.885 kb on + strand, within sET at 479.885 kb on + strand, within sET at 479.885 kb on + strand, within sET at 479.885 kb on + strand, within sET at 479.885 kb on + strand, within sET at 479.885 kb on + strand, within sET at 479.886 kb on - strand, within sET at 479.886 kb on - strand, within sET at 479.886 kb on - strand, within sET at 479.886 kb on - strand, within sET at 479.886 kb on - strand, within sET at 479.886 kb on - strand, within sET at 479.886 kb on - strand, within sET at 479.886 kb on - strand, within sET at 479.886 kb on - strand, within sET at 479.886 kb on - strand, within sET at 479.886 kb on - strand, within sET at 479.886 kb on - strand, within sET at 479.886 kb on - strand, within sET at 479.886 kb on - strand, within sET at 479.886 kb on - strand, within sET at 479.886 kb on - strand, within sET at 479.891 kb on + strand, within sET at 479.892 kb on - strand, within sET at 479.892 kb on - strand, within sET at 480.025 kb on - strand at 480.025 kb on - strand at 480.099 kb on + strand at 480.099 kb on + strand at 480.099 kb on + strand at 480.099 kb on + strand at 480.100 kb on - strand at 480.100 kb on - strand at 480.100 kb on - strand at 480.121 kb on - strand at 480.121 kb on - strand at 480.162 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 477,760 + OKGIIK_02065 0.46 +1.1 477,760 + OKGIIK_02065 0.46 +0.3 477,760 + OKGIIK_02065 0.46 -0.4 477,760 + OKGIIK_02065 0.46 +0.5 477,760 + OKGIIK_02065 0.46 -0.3 477,760 + OKGIIK_02065 0.46 +1.5 477,761 - OKGIIK_02065 0.46 +0.6 477,761 - OKGIIK_02065 0.46 +0.7 477,761 - OKGIIK_02065 0.46 +1.5 477,883 + OKGIIK_02065 0.53 +1.2 477,883 + OKGIIK_02065 0.53 -1.5 477,883 + OKGIIK_02065 0.53 +0.8 477,884 - OKGIIK_02065 0.53 +0.7 477,884 - OKGIIK_02065 0.53 -0.1 477,884 - OKGIIK_02065 0.53 +0.8 477,884 - OKGIIK_02065 0.53 -0.1 478,144 + OKGIIK_02065 0.67 +0.6 478,145 - OKGIIK_02065 0.67 -0.8 478,145 - OKGIIK_02065 0.67 -1.7 478,145 - OKGIIK_02065 0.67 +1.2 478,145 - OKGIIK_02065 0.67 +0.7 478,145 - OKGIIK_02065 0.67 +0.1 478,426 + OKGIIK_02065 0.83 -1.3 478,720 + +0.0 478,720 + +0.7 478,720 + -0.7 478,720 + -1.5 478,720 + -1.1 478,720 + -0.5 478,720 + -1.6 478,720 + -0.2 478,720 + +0.3 478,720 + +1.8 478,720 + +0.2 478,720 + -2.0 478,720 + +0.7 478,721 - +0.2 478,721 - -1.3 478,721 - -1.3 478,721 - -1.1 478,721 - +0.1 478,721 - -0.5 478,721 - -2.2 478,721 - -0.3 478,721 - +1.3 478,721 - -0.3 478,721 - +0.7 478,721 - +0.2 478,721 - -0.0 478,721 - -0.8 478,721 - -1.3 478,721 - +0.0 478,761 + +0.6 478,761 + -0.6 478,761 + -0.7 478,761 + -0.5 478,761 + +0.1 478,761 + +0.2 478,761 + -1.3 478,761 + +1.3 478,761 + -1.3 478,762 - -1.7 478,762 - -1.4 478,873 - OKGIIK_02070 0.25 -0.8 478,937 - OKGIIK_02070 0.38 -1.5 478,937 - OKGIIK_02070 0.38 -1.1 478,937 - OKGIIK_02070 0.38 -1.3 478,937 - OKGIIK_02070 0.38 -1.5 479,070 + OKGIIK_02070 0.66 +1.2 479,154 + OKGIIK_02070 0.84 +0.9 479,154 + OKGIIK_02070 0.84 -1.8 479,155 - OKGIIK_02070 0.84 -0.7 479,257 + +0.2 479,266 + -0.3 479,266 + -1.1 479,266 + +0.5 479,267 - -1.5 479,267 - -3.2 479,294 + +1.5 479,294 + -0.1 479,294 + -0.6 479,295 - +0.1 479,422 + -1.0 479,624 + sET OKGIIK_02075 0.20 -1.4 479,624 + sET OKGIIK_02075 0.20 -0.7 479,624 + sET OKGIIK_02075 0.20 -0.2 479,624 + sET OKGIIK_02075 0.20 +0.3 479,625 - sET OKGIIK_02075 0.20 -0.5 479,625 - sET OKGIIK_02075 0.20 +1.2 479,625 - sET OKGIIK_02075 0.20 -0.8 479,625 - sET OKGIIK_02075 0.20 +1.5 479,625 - sET OKGIIK_02075 0.20 -1.1 479,625 - sET OKGIIK_02075 0.20 -0.4 479,625 - sET OKGIIK_02075 0.20 -0.6 479,625 - sET OKGIIK_02075 0.20 +2.0 479,666 + sET OKGIIK_02075 0.29 -0.2 479,666 + sET OKGIIK_02075 0.29 +0.3 479,720 + sET OKGIIK_02075 0.40 -1.2 479,720 + sET OKGIIK_02075 0.40 -0.5 479,720 + sET OKGIIK_02075 0.40 -1.7 479,720 + sET OKGIIK_02075 0.40 -0.8 479,720 + sET OKGIIK_02075 0.40 -0.3 479,720 + sET OKGIIK_02075 0.40 -1.5 479,720 + sET OKGIIK_02075 0.40 -0.5 479,720 + sET OKGIIK_02075 0.40 -1.3 479,720 + sET OKGIIK_02075 0.40 +1.1 479,720 + sET OKGIIK_02075 0.40 +1.5 479,720 + sET OKGIIK_02075 0.40 -0.4 479,721 - sET OKGIIK_02075 0.41 -0.6 479,721 - sET OKGIIK_02075 0.41 -0.9 479,721 - sET OKGIIK_02075 0.41 -0.9 479,721 - sET OKGIIK_02075 0.41 -1.3 479,721 - sET OKGIIK_02075 0.41 -2.0 479,721 - sET OKGIIK_02075 0.41 +1.7 479,885 + sET OKGIIK_02075 0.76 +1.1 479,885 + sET OKGIIK_02075 0.76 +0.3 479,885 + sET OKGIIK_02075 0.76 -1.8 479,885 + sET OKGIIK_02075 0.76 +0.2 479,885 + sET OKGIIK_02075 0.76 -1.3 479,885 + sET OKGIIK_02075 0.76 -2.5 479,885 + sET OKGIIK_02075 0.76 +1.2 479,885 + sET OKGIIK_02075 0.76 -0.2 479,885 + sET OKGIIK_02075 0.76 +0.8 479,885 + sET OKGIIK_02075 0.76 -0.5 479,885 + sET OKGIIK_02075 0.76 -0.5 479,885 + sET OKGIIK_02075 0.76 +0.2 479,886 - sET OKGIIK_02075 0.76 -0.6 479,886 - sET OKGIIK_02075 0.76 +0.3 479,886 - sET OKGIIK_02075 0.76 -0.5 479,886 - sET OKGIIK_02075 0.76 -1.3 479,886 - sET OKGIIK_02075 0.76 +0.1 479,886 - sET OKGIIK_02075 0.76 -2.3 479,886 - sET OKGIIK_02075 0.76 -1.3 479,886 - sET OKGIIK_02075 0.76 +0.8 479,886 - sET OKGIIK_02075 0.76 +0.7 479,886 - sET OKGIIK_02075 0.76 +0.5 479,886 - sET OKGIIK_02075 0.76 +0.0 479,886 - sET OKGIIK_02075 0.76 +0.0 479,886 - sET OKGIIK_02075 0.76 -0.2 479,886 - sET OKGIIK_02075 0.76 +0.6 479,886 - sET OKGIIK_02075 0.76 +0.5 479,886 - sET OKGIIK_02075 0.76 -1.7 479,891 + sET OKGIIK_02075 0.77 -0.4 479,892 - sET OKGIIK_02075 0.77 -1.3 479,892 - sET OKGIIK_02075 0.77 -1.8 480,025 - -0.6 480,025 - +0.6 480,099 + -1.1 480,099 + -0.5 480,099 + +0.9 480,099 + -0.7 480,100 - +0.3 480,100 - -0.1 480,100 - -1.1 480,121 - +0.1 480,121 - -0.2 480,162 + -0.5
Or see this region's nucleotide sequence