Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_01785 and rluD are separated by 71 nucleotides rluD and pgeF are separated by 70 nucleotides pgeF and clpB are separated by 126 nucleotides
OKGIIK_01785: OKGIIK_01785 - Outer membrane protein assembly factor BamD, at 413,494 to 414,360
_01785
OKGIIK_01790: rluD - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 414,432 to 415,406
rluD
OKGIIK_01795: pgeF - peptidoglycan editing factor PgeF, at 415,477 to 416,226
pgeF
OKGIIK_01800: clpB - ATP-dependent chaperone ClpB, at 416,353 to 418,944
clpB
Position (kb) 414
415
416 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 413.444 kb on + strand at 413.444 kb on + strand at 413.444 kb on + strand at 413.444 kb on + strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 414.399 kb on - strand at 414.649 kb on + strand, within rluD at 414.649 kb on + strand, within rluD at 414.649 kb on + strand, within rluD at 414.649 kb on + strand, within rluD at 414.650 kb on - strand, within rluD at 414.650 kb on - strand, within rluD at 414.888 kb on + strand, within rluD at 414.889 kb on - strand, within rluD at 414.936 kb on + strand, within rluD at 414.937 kb on - strand, within rluD at 415.188 kb on + strand, within rluD at 415.189 kb on - strand, within rluD at 415.189 kb on - strand, within rluD at 415.401 kb on + strand at 415.401 kb on + strand at 415.402 kb on - strand at 415.402 kb on - strand at 415.402 kb on - strand at 415.402 kb on - strand at 415.767 kb on + strand, within pgeF at 415.767 kb on + strand, within pgeF at 415.767 kb on + strand, within pgeF at 415.767 kb on + strand, within pgeF at 415.768 kb on - strand, within pgeF at 415.768 kb on - strand, within pgeF at 415.768 kb on - strand, within pgeF at 415.768 kb on - strand, within pgeF at 415.768 kb on - strand, within pgeF at 415.969 kb on + strand, within pgeF at 415.970 kb on - strand, within pgeF at 415.970 kb on - strand, within pgeF at 415.970 kb on - strand, within pgeF at 415.970 kb on - strand, within pgeF at 415.970 kb on - strand, within pgeF at 415.970 kb on - strand, within pgeF at 415.970 kb on - strand, within pgeF at 416.113 kb on + strand, within pgeF at 416.113 kb on + strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.158 kb on + strand at 416.158 kb on + strand at 416.158 kb on + strand at 416.158 kb on + strand at 416.158 kb on + strand at 416.158 kb on + strand at 416.159 kb on - strand at 416.159 kb on - strand at 416.159 kb on - strand at 416.294 kb on + strand at 416.295 kb on - strand at 416.348 kb on + strand at 416.348 kb on + strand at 416.348 kb on + strand at 416.348 kb on + strand at 416.348 kb on + strand at 416.348 kb on + strand at 416.349 kb on - strand at 416.349 kb on - strand at 416.349 kb on - strand at 416.349 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 413,444 + -0.5 413,444 + +0.2 413,444 + -0.8 413,444 + -0.8 413,445 - -0.2 413,445 - +0.1 413,445 - +0.5 413,445 - -0.6 413,445 - +0.5 413,445 - -0.2 413,445 - -0.5 413,445 - -0.5 413,445 - -1.5 413,445 - +0.2 414,399 - -0.0 414,649 + rluD OKGIIK_01790 0.22 -1.2 414,649 + rluD OKGIIK_01790 0.22 -0.0 414,649 + rluD OKGIIK_01790 0.22 -0.0 414,649 + rluD OKGIIK_01790 0.22 -1.1 414,650 - rluD OKGIIK_01790 0.22 -1.0 414,650 - rluD OKGIIK_01790 0.22 -0.5 414,888 + rluD OKGIIK_01790 0.47 -1.5 414,889 - rluD OKGIIK_01790 0.47 -0.8 414,936 + rluD OKGIIK_01790 0.52 -1.5 414,937 - rluD OKGIIK_01790 0.52 -2.4 415,188 + rluD OKGIIK_01790 0.78 -1.7 415,189 - rluD OKGIIK_01790 0.78 -1.0 415,189 - rluD OKGIIK_01790 0.78 -1.8 415,401 + -0.6 415,401 + -0.5 415,402 - -0.0 415,402 - -0.5 415,402 - -0.2 415,402 - +3.0 415,767 + pgeF OKGIIK_01795 0.39 +0.4 415,767 + pgeF OKGIIK_01795 0.39 -1.8 415,767 + pgeF OKGIIK_01795 0.39 +0.3 415,767 + pgeF OKGIIK_01795 0.39 -0.5 415,768 - pgeF OKGIIK_01795 0.39 -0.8 415,768 - pgeF OKGIIK_01795 0.39 -1.8 415,768 - pgeF OKGIIK_01795 0.39 -1.3 415,768 - pgeF OKGIIK_01795 0.39 -1.0 415,768 - pgeF OKGIIK_01795 0.39 -2.0 415,969 + pgeF OKGIIK_01795 0.66 -0.7 415,970 - pgeF OKGIIK_01795 0.66 +0.1 415,970 - pgeF OKGIIK_01795 0.66 -0.7 415,970 - pgeF OKGIIK_01795 0.66 -1.5 415,970 - pgeF OKGIIK_01795 0.66 -0.0 415,970 - pgeF OKGIIK_01795 0.66 +0.3 415,970 - pgeF OKGIIK_01795 0.66 +1.0 415,970 - pgeF OKGIIK_01795 0.66 -1.6 416,113 + pgeF OKGIIK_01795 0.85 +0.9 416,113 + pgeF OKGIIK_01795 0.85 -1.9 416,114 - pgeF OKGIIK_01795 0.85 +1.2 416,114 - pgeF OKGIIK_01795 0.85 +0.1 416,114 - pgeF OKGIIK_01795 0.85 -0.5 416,158 + +0.4 416,158 + +1.2 416,158 + -1.8 416,158 + -1.2 416,158 + -0.8 416,158 + -0.9 416,159 - +0.2 416,159 - +0.7 416,159 - -0.8 416,294 + -2.4 416,295 - +0.2 416,348 + -1.8 416,348 + -1.0 416,348 + -1.9 416,348 + -0.3 416,348 + +1.0 416,348 + +0.9 416,349 - +1.7 416,349 - -0.0 416,349 - -0.0 416,349 - +1.0
Or see this region's nucleotide sequence