Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01630

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_01625 and OKGIIK_01630 overlap by 4 nucleotidesOKGIIK_01630 and OKGIIK_01635 overlap by 4 nucleotidesOKGIIK_01635 and OKGIIK_01640 overlap by 8 nucleotides OKGIIK_01625: OKGIIK_01625 - Hydroxyproline-2-epimerase, at 367,775 to 368,716 _01625 OKGIIK_01630: OKGIIK_01630 - D-amino-acid oxidase, at 368,713 to 369,825 _01630 OKGIIK_01635: OKGIIK_01635 - (2Fe-2S)-binding protein, at 369,822 to 370,067 _01635 OKGIIK_01640: OKGIIK_01640 - Oxidoreductase, at 370,060 to 371,370 _01640 Position (kb) 368 369 370Strain fitness (log2 ratio) -2 -1 0 1 2at 367.740 kb on - strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 368.025 kb on - strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.183 kb on + strand, within OKGIIK_01625at 368.184 kb on - strand, within OKGIIK_01625at 368.184 kb on - strand, within OKGIIK_01625at 368.184 kb on - strand, within OKGIIK_01625at 368.184 kb on - strand, within OKGIIK_01625at 368.327 kb on + strand, within OKGIIK_01625at 368.327 kb on + strand, within OKGIIK_01625at 368.327 kb on + strand, within OKGIIK_01625at 368.327 kb on + strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.329 kb on + strand, within OKGIIK_01625at 368.329 kb on + strand, within OKGIIK_01625at 368.330 kb on - strand, within OKGIIK_01625at 368.330 kb on - strand, within OKGIIK_01625at 368.472 kb on - strand, within OKGIIK_01625at 368.472 kb on - strand, within OKGIIK_01625at 368.597 kb on + strand, within OKGIIK_01625at 368.598 kb on - strand, within OKGIIK_01625at 368.598 kb on - strand, within OKGIIK_01625at 368.598 kb on - strand, within OKGIIK_01625at 368.903 kb on - strand, within OKGIIK_01630at 369.073 kb on + strand, within OKGIIK_01630at 369.073 kb on + strand, within OKGIIK_01630at 369.073 kb on + strand, within OKGIIK_01630at 369.073 kb on + strand, within OKGIIK_01630at 369.073 kb on + strand, within OKGIIK_01630at 369.073 kb on + strand, within OKGIIK_01630at 369.074 kb on - strand, within OKGIIK_01630at 369.074 kb on - strand, within OKGIIK_01630at 369.142 kb on + strand, within OKGIIK_01630at 369.142 kb on + strand, within OKGIIK_01630at 369.143 kb on - strand, within OKGIIK_01630at 369.332 kb on - strand, within OKGIIK_01630at 369.332 kb on - strand, within OKGIIK_01630at 369.407 kb on - strand, within OKGIIK_01630at 369.407 kb on - strand, within OKGIIK_01630at 369.407 kb on - strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.646 kb on + strand, within OKGIIK_01630at 369.646 kb on + strand, within OKGIIK_01630at 369.646 kb on + strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.787 kb on + strandat 369.788 kb on - strandat 370.082 kb on - strandat 370.082 kb on - strandat 370.357 kb on + strand, within OKGIIK_01640at 370.357 kb on + strand, within OKGIIK_01640at 370.358 kb on - strand, within OKGIIK_01640at 370.370 kb on + strand, within OKGIIK_01640at 370.371 kb on - strand, within OKGIIK_01640

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM
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367,740 - -2.0
367,780 + -0.3
367,780 + +0.2
367,780 + -1.6
367,780 + -1.8
367,780 + +0.1
367,780 + +1.2
367,780 + +1.9
367,781 - +1.1
367,781 - +0.7
367,781 - -1.9
367,781 - +0.3
367,781 - -0.5
367,781 - -0.8
367,781 - -1.4
367,781 - +1.1
368,025 - OKGIIK_01625 0.27 -0.5
368,105 + OKGIIK_01625 0.35 -0.3
368,105 + OKGIIK_01625 0.35 +0.2
368,105 + OKGIIK_01625 0.35 +0.5
368,105 + OKGIIK_01625 0.35 -1.8
368,105 + OKGIIK_01625 0.35 +1.5
368,105 + OKGIIK_01625 0.35 -0.5
368,105 + OKGIIK_01625 0.35 +0.3
368,105 + OKGIIK_01625 0.35 +0.8
368,105 + OKGIIK_01625 0.35 +0.5
368,105 + OKGIIK_01625 0.35 +0.5
368,105 + OKGIIK_01625 0.35 +0.4
368,105 + OKGIIK_01625 0.35 +0.5
368,105 + OKGIIK_01625 0.35 +1.2
368,105 + OKGIIK_01625 0.35 +1.1
368,105 + OKGIIK_01625 0.35 -2.0
368,105 + OKGIIK_01625 0.35 +0.2
368,106 - OKGIIK_01625 0.35 +0.7
368,106 - OKGIIK_01625 0.35 -0.5
368,106 - OKGIIK_01625 0.35 +0.2
368,106 - OKGIIK_01625 0.35 +1.2
368,106 - OKGIIK_01625 0.35 +0.5
368,106 - OKGIIK_01625 0.35 +1.4
368,106 - OKGIIK_01625 0.35 +0.5
368,106 - OKGIIK_01625 0.35 -0.5
368,106 - OKGIIK_01625 0.35 +2.5
368,106 - OKGIIK_01625 0.35 -0.6
368,106 - OKGIIK_01625 0.35 +0.3
368,183 + OKGIIK_01625 0.43 +0.1
368,184 - OKGIIK_01625 0.43 +0.2
368,184 - OKGIIK_01625 0.43 +0.5
368,184 - OKGIIK_01625 0.43 -0.8
368,184 - OKGIIK_01625 0.43 -1.3
368,327 + OKGIIK_01625 0.59 -0.9
368,327 + OKGIIK_01625 0.59 -2.0
368,327 + OKGIIK_01625 0.59 -0.6
368,327 + OKGIIK_01625 0.59 -1.6
368,328 - OKGIIK_01625 0.59 +1.4
368,328 - OKGIIK_01625 0.59 -1.3
368,328 - OKGIIK_01625 0.59 -0.7
368,328 - OKGIIK_01625 0.59 +1.1
368,328 - OKGIIK_01625 0.59 +0.2
368,328 - OKGIIK_01625 0.59 -0.3
368,329 + OKGIIK_01625 0.59 -0.8
368,329 + OKGIIK_01625 0.59 -0.0
368,330 - OKGIIK_01625 0.59 +1.9
368,330 - OKGIIK_01625 0.59 +0.4
368,472 - OKGIIK_01625 0.74 -0.2
368,472 - OKGIIK_01625 0.74 +0.3
368,597 + OKGIIK_01625 0.87 +0.7
368,598 - OKGIIK_01625 0.87 -0.2
368,598 - OKGIIK_01625 0.87 +0.5
368,598 - OKGIIK_01625 0.87 -0.8
368,903 - OKGIIK_01630 0.17 +0.3
369,073 + OKGIIK_01630 0.32 -1.0
369,073 + OKGIIK_01630 0.32 +1.5
369,073 + OKGIIK_01630 0.32 +0.1
369,073 + OKGIIK_01630 0.32 +0.8
369,073 + OKGIIK_01630 0.32 +0.8
369,073 + OKGIIK_01630 0.32 -2.4
369,074 - OKGIIK_01630 0.32 -0.1
369,074 - OKGIIK_01630 0.32 +0.1
369,142 + OKGIIK_01630 0.39 -0.0
369,142 + OKGIIK_01630 0.39 +1.5
369,143 - OKGIIK_01630 0.39 +0.6
369,332 - OKGIIK_01630 0.56 -0.2
369,332 - OKGIIK_01630 0.56 -2.4
369,407 - OKGIIK_01630 0.62 +1.1
369,407 - OKGIIK_01630 0.62 -1.5
369,407 - OKGIIK_01630 0.62 +0.8
369,558 + OKGIIK_01630 0.76 +0.7
369,558 + OKGIIK_01630 0.76 +0.7
369,558 + OKGIIK_01630 0.76 -1.8
369,558 + OKGIIK_01630 0.76 -0.5
369,558 + OKGIIK_01630 0.76 +0.2
369,558 + OKGIIK_01630 0.76 +0.2
369,558 + OKGIIK_01630 0.76 -1.6
369,558 + OKGIIK_01630 0.76 +0.3
369,558 + OKGIIK_01630 0.76 -2.2
369,558 + OKGIIK_01630 0.76 +0.2
369,558 + OKGIIK_01630 0.76 +1.1
369,559 - OKGIIK_01630 0.76 -0.0
369,559 - OKGIIK_01630 0.76 -0.0
369,559 - OKGIIK_01630 0.76 -0.2
369,559 - OKGIIK_01630 0.76 +0.8
369,559 - OKGIIK_01630 0.76 +0.4
369,559 - OKGIIK_01630 0.76 -0.8
369,559 - OKGIIK_01630 0.76 -0.5
369,559 - OKGIIK_01630 0.76 -1.8
369,559 - OKGIIK_01630 0.76 -0.6
369,646 + OKGIIK_01630 0.84 +0.3
369,646 + OKGIIK_01630 0.84 +0.8
369,646 + OKGIIK_01630 0.84 -0.5
369,647 - OKGIIK_01630 0.84 -0.5
369,647 - OKGIIK_01630 0.84 -0.4
369,647 - OKGIIK_01630 0.84 +0.0
369,647 - OKGIIK_01630 0.84 +0.3
369,647 - OKGIIK_01630 0.84 -0.0
369,647 - OKGIIK_01630 0.84 -1.4
369,647 - OKGIIK_01630 0.84 -0.5
369,647 - OKGIIK_01630 0.84 -0.7
369,787 + +0.1
369,788 - -0.4
370,082 - +1.1
370,082 - -0.9
370,357 + OKGIIK_01640 0.23 -0.6
370,357 + OKGIIK_01640 0.23 +2.0
370,358 - OKGIIK_01640 0.23 -0.8
370,370 + OKGIIK_01640 0.24 +0.5
370,371 - OKGIIK_01640 0.24 +1.0

Or see this region's nucleotide sequence