Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01340

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_01335 and OKGIIK_01340 are separated by 115 nucleotidesOKGIIK_01340 and OKGIIK_01345 are separated by 95 nucleotides OKGIIK_01335: OKGIIK_01335 - ATP:ADP antiporter, AAA family, at 295,952 to 297,292 _01335 OKGIIK_01340: OKGIIK_01340 - histidine kinase, at 297,408 to 297,836 _01340 OKGIIK_01345: OKGIIK_01345 - Glycosyl transferase family 2, at 297,932 to 298,870 _01345 Position (kb) 297 298Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 296.663 kb on + strand, within OKGIIK_01335at 296.663 kb on + strand, within OKGIIK_01335at 296.663 kb on + strand, within OKGIIK_01335at 296.663 kb on + strand, within OKGIIK_01335at 296.663 kb on + strand, within OKGIIK_01335at 296.663 kb on + strand, within OKGIIK_01335at 296.663 kb on + strand, within OKGIIK_01335at 296.663 kb on + strand, within OKGIIK_01335at 296.663 kb on + strand, within OKGIIK_01335at 296.663 kb on + strand, within OKGIIK_01335at 296.663 kb on + strand, within OKGIIK_01335at 296.663 kb on + strand, within OKGIIK_01335at 296.663 kb on + strand, within OKGIIK_01335at 296.664 kb on - strand, within OKGIIK_01335at 296.664 kb on - strand, within OKGIIK_01335at 296.664 kb on - strand, within OKGIIK_01335at 296.664 kb on - strand, within OKGIIK_01335at 296.664 kb on - strand, within OKGIIK_01335at 296.664 kb on - strand, within OKGIIK_01335at 296.664 kb on - strand, within OKGIIK_01335at 296.664 kb on - strand, within OKGIIK_01335at 296.664 kb on - strand, within OKGIIK_01335at 296.664 kb on - strand, within OKGIIK_01335at 296.664 kb on - strand, within OKGIIK_01335at 296.711 kb on + strand, within OKGIIK_01335at 296.711 kb on + strand, within OKGIIK_01335at 296.712 kb on - strand, within OKGIIK_01335at 296.712 kb on - strand, within OKGIIK_01335at 296.712 kb on - strand, within OKGIIK_01335at 296.730 kb on - strand, within OKGIIK_01335at 296.774 kb on + strand, within OKGIIK_01335at 296.774 kb on + strand, within OKGIIK_01335at 296.774 kb on + strand, within OKGIIK_01335at 296.774 kb on + strand, within OKGIIK_01335at 296.775 kb on - strand, within OKGIIK_01335at 296.775 kb on - strand, within OKGIIK_01335at 296.775 kb on - strand, within OKGIIK_01335at 296.775 kb on - strand, within OKGIIK_01335at 296.775 kb on - strand, within OKGIIK_01335at 296.775 kb on - strand, within OKGIIK_01335at 296.775 kb on - strand, within OKGIIK_01335at 296.775 kb on - strand, within OKGIIK_01335at 296.775 kb on - strand, within OKGIIK_01335at 296.932 kb on + strand, within OKGIIK_01335at 297.003 kb on - strand, within OKGIIK_01335at 297.035 kb on + strand, within OKGIIK_01335at 297.035 kb on + strand, within OKGIIK_01335at 297.035 kb on + strand, within OKGIIK_01335at 297.035 kb on + strand, within OKGIIK_01335at 297.036 kb on - strand, within OKGIIK_01335at 297.036 kb on - strand, within OKGIIK_01335at 297.036 kb on - strand, within OKGIIK_01335at 297.062 kb on + strand, within OKGIIK_01335at 297.063 kb on - strand, within OKGIIK_01335at 297.063 kb on - strand, within OKGIIK_01335at 297.063 kb on - strand, within OKGIIK_01335at 297.063 kb on - strand, within OKGIIK_01335at 297.063 kb on - strand, within OKGIIK_01335at 297.063 kb on - strand, within OKGIIK_01335at 297.063 kb on - strand, within OKGIIK_01335at 297.063 kb on - strand, within OKGIIK_01335at 297.063 kb on - strand, within OKGIIK_01335at 297.419 kb on + strandat 297.419 kb on + strandat 297.419 kb on + strandat 297.419 kb on + strandat 297.419 kb on + strandat 297.419 kb on + strandat 297.419 kb on + strandat 297.419 kb on + strandat 297.420 kb on - strandat 297.420 kb on - strandat 297.420 kb on - strandat 297.420 kb on - strandat 297.421 kb on + strandat 297.421 kb on + strandat 297.421 kb on + strandat 297.421 kb on + strandat 297.421 kb on + strandat 297.421 kb on + strandat 297.421 kb on + strandat 297.421 kb on + strandat 297.421 kb on + strandat 297.421 kb on + strandat 297.421 kb on + strandat 297.422 kb on - strandat 297.422 kb on - strandat 297.422 kb on - strandat 297.621 kb on + strand, within OKGIIK_01340at 297.670 kb on + strand, within OKGIIK_01340at 297.670 kb on + strand, within OKGIIK_01340at 297.671 kb on - strand, within OKGIIK_01340at 297.671 kb on - strand, within OKGIIK_01340at 297.671 kb on - strand, within OKGIIK_01340at 297.790 kb on + strand, within OKGIIK_01340at 297.790 kb on + strand, within OKGIIK_01340at 297.791 kb on - strand, within OKGIIK_01340at 297.791 kb on - strand, within OKGIIK_01340at 297.791 kb on - strand, within OKGIIK_01340at 297.791 kb on - strand, within OKGIIK_01340at 297.791 kb on - strand, within OKGIIK_01340at 297.791 kb on - strand, within OKGIIK_01340at 297.791 kb on - strand, within OKGIIK_01340at 297.791 kb on - strand, within OKGIIK_01340at 297.791 kb on - strand, within OKGIIK_01340at 297.882 kb on - strandat 297.906 kb on - strandat 297.972 kb on + strandat 297.972 kb on + strandat 297.972 kb on + strandat 297.972 kb on + strandat 297.972 kb on + strandat 297.972 kb on + strandat 297.972 kb on + strandat 297.972 kb on + strandat 297.973 kb on - strandat 297.973 kb on - strandat 297.973 kb on - strandat 297.973 kb on - strandat 297.999 kb on + strandat 298.014 kb on + strandat 298.014 kb on + strandat 298.014 kb on + strandat 298.015 kb on - strandat 298.108 kb on - strand, within OKGIIK_01345at 298.140 kb on + strand, within OKGIIK_01345at 298.141 kb on - strand, within OKGIIK_01345at 298.248 kb on + strand, within OKGIIK_01345at 298.248 kb on + strand, within OKGIIK_01345at 298.248 kb on + strand, within OKGIIK_01345at 298.248 kb on + strand, within OKGIIK_01345at 298.248 kb on + strand, within OKGIIK_01345at 298.248 kb on + strand, within OKGIIK_01345at 298.248 kb on + strand, within OKGIIK_01345at 298.248 kb on + strand, within OKGIIK_01345at 298.249 kb on - strand, within OKGIIK_01345at 298.249 kb on - strand, within OKGIIK_01345at 298.249 kb on - strand, within OKGIIK_01345at 298.249 kb on - strand, within OKGIIK_01345at 298.249 kb on - strand, within OKGIIK_01345at 298.249 kb on - strand, within OKGIIK_01345at 298.249 kb on - strand, within OKGIIK_01345at 298.249 kb on - strand, within OKGIIK_01345at 298.249 kb on - strand, within OKGIIK_01345at 298.249 kb on - strand, within OKGIIK_01345at 298.249 kb on - strand, within OKGIIK_01345at 298.290 kb on + strand, within OKGIIK_01345at 298.290 kb on + strand, within OKGIIK_01345at 298.290 kb on + strand, within OKGIIK_01345at 298.290 kb on + strand, within OKGIIK_01345at 298.290 kb on + strand, within OKGIIK_01345at 298.290 kb on + strand, within OKGIIK_01345at 298.291 kb on - strand, within OKGIIK_01345at 298.291 kb on - strand, within OKGIIK_01345at 298.291 kb on - strand, within OKGIIK_01345at 298.291 kb on - strand, within OKGIIK_01345at 298.291 kb on - strand, within OKGIIK_01345at 298.291 kb on - strand, within OKGIIK_01345at 298.291 kb on - strand, within OKGIIK_01345at 298.291 kb on - strand, within OKGIIK_01345at 298.455 kb on + strand, within OKGIIK_01345at 298.455 kb on + strand, within OKGIIK_01345at 298.518 kb on + strand, within OKGIIK_01345at 298.518 kb on + strand, within OKGIIK_01345at 298.518 kb on + strand, within OKGIIK_01345at 298.518 kb on + strand, within OKGIIK_01345at 298.518 kb on + strand, within OKGIIK_01345at 298.519 kb on - strand, within OKGIIK_01345at 298.519 kb on - strand, within OKGIIK_01345at 298.519 kb on - strand, within OKGIIK_01345at 298.519 kb on - strand, within OKGIIK_01345at 298.755 kb on + strand, within OKGIIK_01345at 298.755 kb on + strand, within OKGIIK_01345at 298.755 kb on + strand, within OKGIIK_01345at 298.755 kb on + strand, within OKGIIK_01345at 298.755 kb on + strand, within OKGIIK_01345at 298.755 kb on + strand, within OKGIIK_01345at 298.755 kb on + strand, within OKGIIK_01345at 298.755 kb on + strand, within OKGIIK_01345at 298.755 kb on + strand, within OKGIIK_01345at 298.755 kb on + strand, within OKGIIK_01345at 298.755 kb on + strand, within OKGIIK_01345at 298.755 kb on + strand, within OKGIIK_01345at 298.756 kb on - strand, within OKGIIK_01345at 298.756 kb on - strand, within OKGIIK_01345at 298.756 kb on - strand, within OKGIIK_01345at 298.756 kb on - strand, within OKGIIK_01345at 298.756 kb on - strand, within OKGIIK_01345at 298.756 kb on - strand, within OKGIIK_01345at 298.756 kb on - strand, within OKGIIK_01345at 298.756 kb on - strand, within OKGIIK_01345

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM
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296,663 + OKGIIK_01335 0.53 -0.1
296,663 + OKGIIK_01335 0.53 -0.7
296,663 + OKGIIK_01335 0.53 +0.5
296,663 + OKGIIK_01335 0.53 -0.1
296,663 + OKGIIK_01335 0.53 -0.3
296,663 + OKGIIK_01335 0.53 -0.1
296,663 + OKGIIK_01335 0.53 +0.4
296,663 + OKGIIK_01335 0.53 -1.2
296,663 + OKGIIK_01335 0.53 +0.6
296,663 + OKGIIK_01335 0.53 +0.2
296,663 + OKGIIK_01335 0.53 +0.4
296,663 + OKGIIK_01335 0.53 +0.5
296,663 + OKGIIK_01335 0.53 +0.1
296,664 - OKGIIK_01335 0.53 -2.1
296,664 - OKGIIK_01335 0.53 +0.1
296,664 - OKGIIK_01335 0.53 -0.7
296,664 - OKGIIK_01335 0.53 -1.0
296,664 - OKGIIK_01335 0.53 -2.3
296,664 - OKGIIK_01335 0.53 +0.0
296,664 - OKGIIK_01335 0.53 -1.5
296,664 - OKGIIK_01335 0.53 -0.7
296,664 - OKGIIK_01335 0.53 -2.3
296,664 - OKGIIK_01335 0.53 -1.9
296,664 - OKGIIK_01335 0.53 -0.6
296,711 + OKGIIK_01335 0.57 +0.1
296,711 + OKGIIK_01335 0.57 +0.4
296,712 - OKGIIK_01335 0.57 +1.3
296,712 - OKGIIK_01335 0.57 +0.2
296,712 - OKGIIK_01335 0.57 -0.8
296,730 - OKGIIK_01335 0.58 +0.8
296,774 + OKGIIK_01335 0.61 -0.7
296,774 + OKGIIK_01335 0.61 +0.5
296,774 + OKGIIK_01335 0.61 -1.9
296,774 + OKGIIK_01335 0.61 +1.2
296,775 - OKGIIK_01335 0.61 +0.2
296,775 - OKGIIK_01335 0.61 -0.5
296,775 - OKGIIK_01335 0.61 -0.5
296,775 - OKGIIK_01335 0.61 -0.5
296,775 - OKGIIK_01335 0.61 -0.3
296,775 - OKGIIK_01335 0.61 -0.2
296,775 - OKGIIK_01335 0.61 -0.7
296,775 - OKGIIK_01335 0.61 +0.3
296,775 - OKGIIK_01335 0.61 -1.9
296,932 + OKGIIK_01335 0.73 -0.2
297,003 - OKGIIK_01335 0.78 -1.5
297,035 + OKGIIK_01335 0.81 -0.6
297,035 + OKGIIK_01335 0.81 +0.8
297,035 + OKGIIK_01335 0.81 -0.3
297,035 + OKGIIK_01335 0.81 +0.1
297,036 - OKGIIK_01335 0.81 -0.4
297,036 - OKGIIK_01335 0.81 +0.7
297,036 - OKGIIK_01335 0.81 -1.6
297,062 + OKGIIK_01335 0.83 -0.8
297,063 - OKGIIK_01335 0.83 -1.3
297,063 - OKGIIK_01335 0.83 -0.8
297,063 - OKGIIK_01335 0.83 +0.4
297,063 - OKGIIK_01335 0.83 -0.6
297,063 - OKGIIK_01335 0.83 -0.9
297,063 - OKGIIK_01335 0.83 -0.4
297,063 - OKGIIK_01335 0.83 -0.8
297,063 - OKGIIK_01335 0.83 +0.5
297,063 - OKGIIK_01335 0.83 -1.1
297,419 + -2.0
297,419 + -1.5
297,419 + +0.9
297,419 + +0.3
297,419 + +0.4
297,419 + -2.2
297,419 + -0.2
297,419 + +0.5
297,420 - +1.4
297,420 - +0.7
297,420 - -0.7
297,420 - -0.2
297,421 + +0.9
297,421 + +0.4
297,421 + +0.2
297,421 + +1.5
297,421 + +0.9
297,421 + -1.3
297,421 + -0.1
297,421 + +0.7
297,421 + -0.4
297,421 + +0.1
297,421 + +0.5
297,422 - +0.2
297,422 - -1.8
297,422 - -0.3
297,621 + OKGIIK_01340 0.50 -0.3
297,670 + OKGIIK_01340 0.61 -0.1
297,670 + OKGIIK_01340 0.61 -0.4
297,671 - OKGIIK_01340 0.61 +1.5
297,671 - OKGIIK_01340 0.61 -0.5
297,671 - OKGIIK_01340 0.61 -0.8
297,790 + OKGIIK_01340 0.89 +0.2
297,790 + OKGIIK_01340 0.89 +0.3
297,791 - OKGIIK_01340 0.89 -1.9
297,791 - OKGIIK_01340 0.89 -1.3
297,791 - OKGIIK_01340 0.89 -1.6
297,791 - OKGIIK_01340 0.89 -1.3
297,791 - OKGIIK_01340 0.89 +1.9
297,791 - OKGIIK_01340 0.89 +0.9
297,791 - OKGIIK_01340 0.89 -0.1
297,791 - OKGIIK_01340 0.89 -0.2
297,791 - OKGIIK_01340 0.89 -0.5
297,882 - -1.1
297,906 - +1.2
297,972 + -0.5
297,972 + +0.2
297,972 + +0.2
297,972 + -0.1
297,972 + +1.1
297,972 + -1.1
297,972 + +0.4
297,972 + -0.9
297,973 - -1.5
297,973 - -0.5
297,973 - -0.3
297,973 - -0.9
297,999 + -1.5
298,014 + -0.2
298,014 + -0.1
298,014 + -1.1
298,015 - +0.1
298,108 - OKGIIK_01345 0.19 -0.6
298,140 + OKGIIK_01345 0.22 +0.1
298,141 - OKGIIK_01345 0.22 -0.5
298,248 + OKGIIK_01345 0.34 +0.8
298,248 + OKGIIK_01345 0.34 -0.5
298,248 + OKGIIK_01345 0.34 +0.1
298,248 + OKGIIK_01345 0.34 -0.9
298,248 + OKGIIK_01345 0.34 -1.1
298,248 + OKGIIK_01345 0.34 -1.4
298,248 + OKGIIK_01345 0.34 -0.3
298,248 + OKGIIK_01345 0.34 -0.5
298,249 - OKGIIK_01345 0.34 +0.4
298,249 - OKGIIK_01345 0.34 -0.1
298,249 - OKGIIK_01345 0.34 -0.8
298,249 - OKGIIK_01345 0.34 -0.4
298,249 - OKGIIK_01345 0.34 -1.1
298,249 - OKGIIK_01345 0.34 -1.3
298,249 - OKGIIK_01345 0.34 +1.5
298,249 - OKGIIK_01345 0.34 +0.3
298,249 - OKGIIK_01345 0.34 +0.5
298,249 - OKGIIK_01345 0.34 -0.4
298,249 - OKGIIK_01345 0.34 +0.3
298,290 + OKGIIK_01345 0.38 +0.5
298,290 + OKGIIK_01345 0.38 -0.5
298,290 + OKGIIK_01345 0.38 -0.3
298,290 + OKGIIK_01345 0.38 -0.1
298,290 + OKGIIK_01345 0.38 -1.6
298,290 + OKGIIK_01345 0.38 -1.5
298,291 - OKGIIK_01345 0.38 +1.5
298,291 - OKGIIK_01345 0.38 +0.4
298,291 - OKGIIK_01345 0.38 -0.2
298,291 - OKGIIK_01345 0.38 +0.3
298,291 - OKGIIK_01345 0.38 +0.0
298,291 - OKGIIK_01345 0.38 +0.5
298,291 - OKGIIK_01345 0.38 -3.1
298,291 - OKGIIK_01345 0.38 -1.5
298,455 + OKGIIK_01345 0.56 +0.4
298,455 + OKGIIK_01345 0.56 -1.8
298,518 + OKGIIK_01345 0.62 -0.9
298,518 + OKGIIK_01345 0.62 -1.8
298,518 + OKGIIK_01345 0.62 -0.5
298,518 + OKGIIK_01345 0.62 +1.5
298,518 + OKGIIK_01345 0.62 +0.9
298,519 - OKGIIK_01345 0.63 -0.5
298,519 - OKGIIK_01345 0.63 -0.0
298,519 - OKGIIK_01345 0.63 -0.5
298,519 - OKGIIK_01345 0.63 -0.9
298,755 + OKGIIK_01345 0.88 -0.1
298,755 + OKGIIK_01345 0.88 -1.0
298,755 + OKGIIK_01345 0.88 -0.4
298,755 + OKGIIK_01345 0.88 +1.5
298,755 + OKGIIK_01345 0.88 -2.1
298,755 + OKGIIK_01345 0.88 +0.8
298,755 + OKGIIK_01345 0.88 -0.5
298,755 + OKGIIK_01345 0.88 +0.2
298,755 + OKGIIK_01345 0.88 -2.2
298,755 + OKGIIK_01345 0.88 -0.1
298,755 + OKGIIK_01345 0.88 +0.6
298,755 + OKGIIK_01345 0.88 +1.2
298,756 - OKGIIK_01345 0.88 -0.3
298,756 - OKGIIK_01345 0.88 +0.1
298,756 - OKGIIK_01345 0.88 -0.5
298,756 - OKGIIK_01345 0.88 +0.1
298,756 - OKGIIK_01345 0.88 -0.5
298,756 - OKGIIK_01345 0.88 -1.7
298,756 - OKGIIK_01345 0.88 -1.1
298,756 - OKGIIK_01345 0.88 -1.5

Or see this region's nucleotide sequence