Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01320

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_01315 and OKGIIK_01320 are separated by 394 nucleotidesOKGIIK_01320 and OKGIIK_01325 are separated by 82 nucleotides OKGIIK_01315: OKGIIK_01315 - Histone-like protein 2, at 291,104 to 291,394 _01315 OKGIIK_01320: OKGIIK_01320 - Protein TonB, at 291,789 to 292,823 _01320 OKGIIK_01325: OKGIIK_01325 - Serine hydrolase, at 292,906 to 294,201 _01325 Position (kb) 291 292 293Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 290.836 kb on - strandat 290.869 kb on + strandat 290.897 kb on + strandat 290.897 kb on + strandat 290.898 kb on - strandat 290.898 kb on - strandat 290.928 kb on + strandat 290.929 kb on - strandat 290.982 kb on + strandat 290.982 kb on + strandat 290.983 kb on - strandat 290.983 kb on - strandat 290.983 kb on - strandat 290.986 kb on + strandat 291.019 kb on + strandat 291.062 kb on - strandat 291.094 kb on - strandat 291.392 kb on + strandat 291.392 kb on + strandat 291.393 kb on - strandat 291.393 kb on - strandat 291.411 kb on + strandat 291.412 kb on - strandat 291.418 kb on - strandat 291.427 kb on - strandat 291.427 kb on - strandat 291.549 kb on + strandat 291.549 kb on + strandat 291.549 kb on + strandat 291.624 kb on + strandat 291.624 kb on + strandat 291.624 kb on + strandat 291.625 kb on - strandat 291.625 kb on - strandat 291.688 kb on + strandat 291.688 kb on + strandat 291.688 kb on + strandat 291.688 kb on + strandat 291.689 kb on - strandat 291.689 kb on - strandat 291.689 kb on - strandat 291.689 kb on - strandat 291.763 kb on + strandat 291.763 kb on + strandat 291.763 kb on + strandat 291.802 kb on - strandat 292.068 kb on + strand, within OKGIIK_01320at 292.068 kb on + strand, within OKGIIK_01320at 292.069 kb on - strand, within OKGIIK_01320at 292.069 kb on - strand, within OKGIIK_01320at 292.104 kb on + strand, within OKGIIK_01320at 292.104 kb on + strand, within OKGIIK_01320at 292.104 kb on + strand, within OKGIIK_01320at 292.104 kb on + strand, within OKGIIK_01320at 292.104 kb on + strand, within OKGIIK_01320at 292.105 kb on - strand, within OKGIIK_01320at 292.105 kb on - strand, within OKGIIK_01320at 292.105 kb on - strand, within OKGIIK_01320at 292.525 kb on + strand, within OKGIIK_01320at 292.746 kb on + strandat 292.746 kb on + strandat 292.747 kb on - strandat 292.747 kb on - strandat 293.097 kb on - strand, within OKGIIK_01325at 293.097 kb on - strand, within OKGIIK_01325at 293.097 kb on - strand, within OKGIIK_01325at 293.097 kb on - strand, within OKGIIK_01325at 293.097 kb on - strand, within OKGIIK_01325at 293.097 kb on - strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.150 kb on + strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.151 kb on - strand, within OKGIIK_01325at 293.171 kb on + strand, within OKGIIK_01325at 293.171 kb on + strand, within OKGIIK_01325at 293.171 kb on + strand, within OKGIIK_01325at 293.171 kb on + strand, within OKGIIK_01325at 293.171 kb on + strand, within OKGIIK_01325at 293.172 kb on - strand, within OKGIIK_01325at 293.172 kb on - strand, within OKGIIK_01325at 293.172 kb on - strand, within OKGIIK_01325at 293.172 kb on - strand, within OKGIIK_01325at 293.172 kb on - strand, within OKGIIK_01325at 293.172 kb on - strand, within OKGIIK_01325at 293.172 kb on - strand, within OKGIIK_01325at 293.172 kb on - strand, within OKGIIK_01325at 293.172 kb on - strand, within OKGIIK_01325at 293.177 kb on + strand, within OKGIIK_01325at 293.177 kb on + strand, within OKGIIK_01325at 293.177 kb on + strand, within OKGIIK_01325at 293.177 kb on + strand, within OKGIIK_01325at 293.177 kb on + strand, within OKGIIK_01325at 293.177 kb on + strand, within OKGIIK_01325at 293.178 kb on - strand, within OKGIIK_01325at 293.178 kb on - strand, within OKGIIK_01325at 293.178 kb on - strand, within OKGIIK_01325at 293.178 kb on - strand, within OKGIIK_01325at 293.178 kb on - strand, within OKGIIK_01325at 293.178 kb on - strand, within OKGIIK_01325at 293.178 kb on - strand, within OKGIIK_01325at 293.178 kb on - strand, within OKGIIK_01325at 293.178 kb on - strand, within OKGIIK_01325at 293.178 kb on - strand, within OKGIIK_01325at 293.178 kb on - strand, within OKGIIK_01325at 293.198 kb on + strand, within OKGIIK_01325at 293.198 kb on + strand, within OKGIIK_01325at 293.199 kb on - strand, within OKGIIK_01325at 293.199 kb on - strand, within OKGIIK_01325at 293.390 kb on + strand, within OKGIIK_01325at 293.391 kb on - strand, within OKGIIK_01325at 293.391 kb on - strand, within OKGIIK_01325at 293.393 kb on + strand, within OKGIIK_01325at 293.393 kb on + strand, within OKGIIK_01325at 293.393 kb on + strand, within OKGIIK_01325at 293.393 kb on + strand, within OKGIIK_01325at 293.393 kb on + strand, within OKGIIK_01325at 293.393 kb on + strand, within OKGIIK_01325at 293.393 kb on + strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.394 kb on - strand, within OKGIIK_01325at 293.486 kb on + strand, within OKGIIK_01325at 293.487 kb on - strand, within OKGIIK_01325at 293.487 kb on - strand, within OKGIIK_01325at 293.513 kb on + strand, within OKGIIK_01325at 293.514 kb on - strand, within OKGIIK_01325at 293.514 kb on - strand, within OKGIIK_01325at 293.514 kb on - strand, within OKGIIK_01325at 293.541 kb on - strand, within OKGIIK_01325at 293.609 kb on + strand, within OKGIIK_01325at 293.609 kb on + strand, within OKGIIK_01325at 293.609 kb on + strand, within OKGIIK_01325at 293.609 kb on + strand, within OKGIIK_01325at 293.610 kb on - strand, within OKGIIK_01325at 293.610 kb on - strand, within OKGIIK_01325at 293.610 kb on - strand, within OKGIIK_01325at 293.610 kb on - strand, within OKGIIK_01325at 293.669 kb on + strand, within OKGIIK_01325at 293.670 kb on - strand, within OKGIIK_01325at 293.699 kb on + strand, within OKGIIK_01325at 293.699 kb on + strand, within OKGIIK_01325at 293.699 kb on + strand, within OKGIIK_01325at 293.699 kb on + strand, within OKGIIK_01325at 293.699 kb on + strand, within OKGIIK_01325at 293.699 kb on + strand, within OKGIIK_01325at 293.699 kb on + strand, within OKGIIK_01325at 293.699 kb on + strand, within OKGIIK_01325at 293.699 kb on + strand, within OKGIIK_01325at 293.699 kb on + strand, within OKGIIK_01325at 293.699 kb on + strand, within OKGIIK_01325at 293.699 kb on + strand, within OKGIIK_01325at 293.699 kb on + strand, within OKGIIK_01325at 293.699 kb on + strand, within OKGIIK_01325at 293.700 kb on - strand, within OKGIIK_01325at 293.700 kb on - strand, within OKGIIK_01325at 293.700 kb on - strand, within OKGIIK_01325at 293.700 kb on - strand, within OKGIIK_01325at 293.700 kb on - strand, within OKGIIK_01325at 293.700 kb on - strand, within OKGIIK_01325at 293.700 kb on - strand, within OKGIIK_01325at 293.700 kb on - strand, within OKGIIK_01325at 293.700 kb on - strand, within OKGIIK_01325at 293.700 kb on - strand, within OKGIIK_01325at 293.700 kb on - strand, within OKGIIK_01325at 293.786 kb on + strand, within OKGIIK_01325at 293.786 kb on + strand, within OKGIIK_01325at 293.786 kb on + strand, within OKGIIK_01325at 293.786 kb on + strand, within OKGIIK_01325at 293.786 kb on + strand, within OKGIIK_01325at 293.787 kb on - strand, within OKGIIK_01325at 293.787 kb on - strand, within OKGIIK_01325at 293.812 kb on - strand, within OKGIIK_01325

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM
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290,836 - -0.6
290,869 + -0.2
290,897 + +0.5
290,897 + -1.2
290,898 - -0.3
290,898 - -1.6
290,928 + +0.0
290,929 - -1.6
290,982 + +0.3
290,982 + -0.1
290,983 - -0.9
290,983 - -1.1
290,983 - -1.5
290,986 + +0.6
291,019 + -0.4
291,062 - -2.5
291,094 - +0.1
291,392 + -0.3
291,392 + -1.0
291,393 - -1.1
291,393 - -2.1
291,411 + -0.8
291,412 - -0.5
291,418 - -1.6
291,427 - -0.1
291,427 - -0.7
291,549 + -0.3
291,549 + +2.2
291,549 + -0.5
291,624 + -0.8
291,624 + +1.5
291,624 + -0.7
291,625 - -0.6
291,625 - -1.6
291,688 + -0.5
291,688 + -0.8
291,688 + +0.7
291,688 + -0.9
291,689 - -0.4
291,689 - +0.5
291,689 - -0.9
291,689 - -2.2
291,763 + +1.1
291,763 + -0.9
291,763 + +0.1
291,802 - +1.1
292,068 + OKGIIK_01320 0.27 -1.1
292,068 + OKGIIK_01320 0.27 -0.6
292,069 - OKGIIK_01320 0.27 +0.1
292,069 - OKGIIK_01320 0.27 -0.5
292,104 + OKGIIK_01320 0.30 -0.9
292,104 + OKGIIK_01320 0.30 -0.4
292,104 + OKGIIK_01320 0.30 -2.4
292,104 + OKGIIK_01320 0.30 -1.3
292,104 + OKGIIK_01320 0.30 -1.8
292,105 - OKGIIK_01320 0.31 +1.2
292,105 - OKGIIK_01320 0.31 -2.4
292,105 - OKGIIK_01320 0.31 -1.1
292,525 + OKGIIK_01320 0.71 +1.3
292,746 + +1.5
292,746 + -2.9
292,747 - -0.1
292,747 - -1.5
293,097 - OKGIIK_01325 0.15 +0.7
293,097 - OKGIIK_01325 0.15 -0.8
293,097 - OKGIIK_01325 0.15 -0.5
293,097 - OKGIIK_01325 0.15 +1.2
293,097 - OKGIIK_01325 0.15 +1.2
293,097 - OKGIIK_01325 0.15 -0.1
293,150 + OKGIIK_01325 0.19 -0.3
293,150 + OKGIIK_01325 0.19 -1.3
293,150 + OKGIIK_01325 0.19 +0.0
293,150 + OKGIIK_01325 0.19 +0.4
293,150 + OKGIIK_01325 0.19 -0.2
293,150 + OKGIIK_01325 0.19 -0.1
293,150 + OKGIIK_01325 0.19 -0.3
293,150 + OKGIIK_01325 0.19 -1.5
293,150 + OKGIIK_01325 0.19 -1.3
293,150 + OKGIIK_01325 0.19 -0.8
293,150 + OKGIIK_01325 0.19 +1.2
293,150 + OKGIIK_01325 0.19 -0.1
293,150 + OKGIIK_01325 0.19 -0.3
293,150 + OKGIIK_01325 0.19 -0.5
293,150 + OKGIIK_01325 0.19 -0.5
293,150 + OKGIIK_01325 0.19 +0.1
293,150 + OKGIIK_01325 0.19 -0.9
293,150 + OKGIIK_01325 0.19 -1.1
293,150 + OKGIIK_01325 0.19 +0.2
293,150 + OKGIIK_01325 0.19 +0.4
293,150 + OKGIIK_01325 0.19 -0.5
293,151 - OKGIIK_01325 0.19 -0.3
293,151 - OKGIIK_01325 0.19 +0.1
293,151 - OKGIIK_01325 0.19 -0.3
293,151 - OKGIIK_01325 0.19 -0.9
293,151 - OKGIIK_01325 0.19 -1.8
293,151 - OKGIIK_01325 0.19 -0.7
293,151 - OKGIIK_01325 0.19 -0.1
293,151 - OKGIIK_01325 0.19 -1.8
293,151 - OKGIIK_01325 0.19 -1.8
293,151 - OKGIIK_01325 0.19 -0.5
293,151 - OKGIIK_01325 0.19 -0.4
293,151 - OKGIIK_01325 0.19 -1.5
293,151 - OKGIIK_01325 0.19 -0.2
293,151 - OKGIIK_01325 0.19 +1.5
293,151 - OKGIIK_01325 0.19 +1.8
293,151 - OKGIIK_01325 0.19 +0.4
293,151 - OKGIIK_01325 0.19 +1.9
293,151 - OKGIIK_01325 0.19 -1.9
293,171 + OKGIIK_01325 0.20 -1.1
293,171 + OKGIIK_01325 0.20 +1.5
293,171 + OKGIIK_01325 0.20 -0.5
293,171 + OKGIIK_01325 0.20 +0.5
293,171 + OKGIIK_01325 0.20 -0.7
293,172 - OKGIIK_01325 0.21 -1.1
293,172 - OKGIIK_01325 0.21 -1.1
293,172 - OKGIIK_01325 0.21 +1.9
293,172 - OKGIIK_01325 0.21 +0.4
293,172 - OKGIIK_01325 0.21 +0.1
293,172 - OKGIIK_01325 0.21 -0.5
293,172 - OKGIIK_01325 0.21 -1.5
293,172 - OKGIIK_01325 0.21 +1.2
293,172 - OKGIIK_01325 0.21 -1.5
293,177 + OKGIIK_01325 0.21 -0.1
293,177 + OKGIIK_01325 0.21 +0.3
293,177 + OKGIIK_01325 0.21 +0.6
293,177 + OKGIIK_01325 0.21 -0.1
293,177 + OKGIIK_01325 0.21 -0.1
293,177 + OKGIIK_01325 0.21 +0.5
293,178 - OKGIIK_01325 0.21 -0.1
293,178 - OKGIIK_01325 0.21 +0.9
293,178 - OKGIIK_01325 0.21 -0.8
293,178 - OKGIIK_01325 0.21 +0.6
293,178 - OKGIIK_01325 0.21 -0.6
293,178 - OKGIIK_01325 0.21 -0.5
293,178 - OKGIIK_01325 0.21 +1.1
293,178 - OKGIIK_01325 0.21 -0.1
293,178 - OKGIIK_01325 0.21 -0.1
293,178 - OKGIIK_01325 0.21 +0.8
293,178 - OKGIIK_01325 0.21 -1.3
293,198 + OKGIIK_01325 0.23 -0.1
293,198 + OKGIIK_01325 0.23 +0.1
293,199 - OKGIIK_01325 0.23 +0.2
293,199 - OKGIIK_01325 0.23 +0.3
293,390 + OKGIIK_01325 0.37 -0.8
293,391 - OKGIIK_01325 0.37 -0.4
293,391 - OKGIIK_01325 0.37 -0.8
293,393 + OKGIIK_01325 0.38 +0.2
293,393 + OKGIIK_01325 0.38 +1.9
293,393 + OKGIIK_01325 0.38 -0.6
293,393 + OKGIIK_01325 0.38 -0.6
293,393 + OKGIIK_01325 0.38 -1.1
293,393 + OKGIIK_01325 0.38 -1.6
293,393 + OKGIIK_01325 0.38 +0.5
293,394 - OKGIIK_01325 0.38 +0.5
293,394 - OKGIIK_01325 0.38 +2.0
293,394 - OKGIIK_01325 0.38 -1.5
293,394 - OKGIIK_01325 0.38 -1.1
293,394 - OKGIIK_01325 0.38 -1.3
293,394 - OKGIIK_01325 0.38 -0.5
293,394 - OKGIIK_01325 0.38 -1.5
293,394 - OKGIIK_01325 0.38 -1.2
293,394 - OKGIIK_01325 0.38 -2.3
293,394 - OKGIIK_01325 0.38 -0.5
293,394 - OKGIIK_01325 0.38 -0.5
293,394 - OKGIIK_01325 0.38 +0.9
293,394 - OKGIIK_01325 0.38 -0.2
293,394 - OKGIIK_01325 0.38 +0.1
293,394 - OKGIIK_01325 0.38 -2.1
293,394 - OKGIIK_01325 0.38 +2.4
293,394 - OKGIIK_01325 0.38 +0.5
293,394 - OKGIIK_01325 0.38 +1.3
293,486 + OKGIIK_01325 0.45 -1.0
293,487 - OKGIIK_01325 0.45 -1.6
293,487 - OKGIIK_01325 0.45 -1.1
293,513 + OKGIIK_01325 0.47 -1.1
293,514 - OKGIIK_01325 0.47 -0.6
293,514 - OKGIIK_01325 0.47 -0.7
293,514 - OKGIIK_01325 0.47 -1.1
293,541 - OKGIIK_01325 0.49 -0.5
293,609 + OKGIIK_01325 0.54 -0.5
293,609 + OKGIIK_01325 0.54 -1.3
293,609 + OKGIIK_01325 0.54 -2.9
293,609 + OKGIIK_01325 0.54 -0.6
293,610 - OKGIIK_01325 0.54 -1.5
293,610 - OKGIIK_01325 0.54 -0.4
293,610 - OKGIIK_01325 0.54 +1.9
293,610 - OKGIIK_01325 0.54 -0.1
293,669 + OKGIIK_01325 0.59 -0.3
293,670 - OKGIIK_01325 0.59 +0.3
293,699 + OKGIIK_01325 0.61 -1.5
293,699 + OKGIIK_01325 0.61 +1.3
293,699 + OKGIIK_01325 0.61 -0.5
293,699 + OKGIIK_01325 0.61 -0.1
293,699 + OKGIIK_01325 0.61 -0.1
293,699 + OKGIIK_01325 0.61 -0.2
293,699 + OKGIIK_01325 0.61 +0.0
293,699 + OKGIIK_01325 0.61 +0.7
293,699 + OKGIIK_01325 0.61 -0.4
293,699 + OKGIIK_01325 0.61 +0.4
293,699 + OKGIIK_01325 0.61 +0.3
293,699 + OKGIIK_01325 0.61 +1.3
293,699 + OKGIIK_01325 0.61 -0.9
293,699 + OKGIIK_01325 0.61 +0.5
293,700 - OKGIIK_01325 0.61 +0.3
293,700 - OKGIIK_01325 0.61 -1.1
293,700 - OKGIIK_01325 0.61 -1.2
293,700 - OKGIIK_01325 0.61 -0.4
293,700 - OKGIIK_01325 0.61 -1.6
293,700 - OKGIIK_01325 0.61 +1.1
293,700 - OKGIIK_01325 0.61 -0.5
293,700 - OKGIIK_01325 0.61 -0.0
293,700 - OKGIIK_01325 0.61 +0.6
293,700 - OKGIIK_01325 0.61 -0.3
293,700 - OKGIIK_01325 0.61 +0.4
293,786 + OKGIIK_01325 0.68 -0.1
293,786 + OKGIIK_01325 0.68 +0.3
293,786 + OKGIIK_01325 0.68 -0.8
293,786 + OKGIIK_01325 0.68 -1.8
293,786 + OKGIIK_01325 0.68 -1.3
293,787 - OKGIIK_01325 0.68 +0.4
293,787 - OKGIIK_01325 0.68 +0.8
293,812 - OKGIIK_01325 0.70 -1.1

Or see this region's nucleotide sequence