Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01270

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_01265 and OKGIIK_01270 are separated by 338 nucleotidesOKGIIK_01270 and OKGIIK_01275 overlap by 4 nucleotidesOKGIIK_01275 and OKGIIK_01280 are separated by 336 nucleotides OKGIIK_01265: OKGIIK_01265 - Glycosyltransferase WbsX, at 276,879 to 278,939 _01265 OKGIIK_01270: OKGIIK_01270 - Transcriptional regulator, at 279,278 to 279,619 _01270 OKGIIK_01275: OKGIIK_01275 - DUF6516 domain-containing protein, at 279,616 to 279,915 _01275 OKGIIK_01280: OKGIIK_01280 - Glyco-trans-2-like domain-containing protein, at 280,252 to 282,354 _01280 Position (kb) 279 280Strain fitness (log2 ratio) -3 -2 -1 0 1at 278.358 kb on + strand, within OKGIIK_01265at 278.358 kb on + strand, within OKGIIK_01265at 278.358 kb on + strand, within OKGIIK_01265at 278.358 kb on + strand, within OKGIIK_01265at 278.359 kb on - strand, within OKGIIK_01265at 278.359 kb on - strand, within OKGIIK_01265at 278.359 kb on - strand, within OKGIIK_01265at 278.440 kb on + strand, within OKGIIK_01265at 278.440 kb on + strand, within OKGIIK_01265at 278.441 kb on - strand, within OKGIIK_01265at 278.441 kb on - strand, within OKGIIK_01265at 278.446 kb on + strand, within OKGIIK_01265at 278.446 kb on + strand, within OKGIIK_01265at 278.446 kb on + strand, within OKGIIK_01265at 278.446 kb on + strand, within OKGIIK_01265at 278.446 kb on + strand, within OKGIIK_01265at 278.446 kb on + strand, within OKGIIK_01265at 278.446 kb on + strand, within OKGIIK_01265at 278.446 kb on + strand, within OKGIIK_01265at 278.447 kb on - strand, within OKGIIK_01265at 278.447 kb on - strand, within OKGIIK_01265at 278.447 kb on - strand, within OKGIIK_01265at 278.447 kb on - strand, within OKGIIK_01265at 278.447 kb on - strand, within OKGIIK_01265at 278.447 kb on - strand, within OKGIIK_01265at 278.447 kb on - strand, within OKGIIK_01265at 278.470 kb on + strand, within OKGIIK_01265at 278.524 kb on + strand, within OKGIIK_01265at 278.524 kb on + strand, within OKGIIK_01265at 278.524 kb on + strand, within OKGIIK_01265at 278.524 kb on + strand, within OKGIIK_01265at 278.524 kb on + strand, within OKGIIK_01265at 278.524 kb on + strand, within OKGIIK_01265at 278.524 kb on + strand, within OKGIIK_01265at 278.524 kb on + strand, within OKGIIK_01265at 278.525 kb on - strand, within OKGIIK_01265at 278.525 kb on - strand, within OKGIIK_01265at 278.662 kb on + strand, within OKGIIK_01265at 278.662 kb on + strand, within OKGIIK_01265at 278.663 kb on - strand, within OKGIIK_01265at 278.663 kb on - strand, within OKGIIK_01265at 278.663 kb on - strand, within OKGIIK_01265at 278.663 kb on - strand, within OKGIIK_01265at 278.663 kb on - strand, within OKGIIK_01265at 278.663 kb on - strand, within OKGIIK_01265at 278.663 kb on - strand, within OKGIIK_01265at 278.663 kb on - strand, within OKGIIK_01265at 278.750 kb on + strandat 278.751 kb on - strandat 278.772 kb on + strandat 278.947 kb on + strandat 278.947 kb on + strandat 278.947 kb on + strandat 278.947 kb on + strandat 278.947 kb on + strandat 278.947 kb on + strandat 278.947 kb on + strandat 278.948 kb on - strandat 278.948 kb on - strandat 278.948 kb on - strandat 278.948 kb on - strandat 278.948 kb on - strandat 278.948 kb on - strandat 279.019 kb on - strandat 279.280 kb on - strandat 279.322 kb on - strand, within OKGIIK_01270at 279.357 kb on - strand, within OKGIIK_01270at 279.357 kb on - strand, within OKGIIK_01270at 279.357 kb on - strand, within OKGIIK_01270at 279.357 kb on - strand, within OKGIIK_01270at 279.357 kb on - strand, within OKGIIK_01270at 279.357 kb on - strand, within OKGIIK_01270at 279.689 kb on + strand, within OKGIIK_01275at 279.689 kb on + strand, within OKGIIK_01275at 279.689 kb on + strand, within OKGIIK_01275at 279.689 kb on + strand, within OKGIIK_01275at 279.689 kb on + strand, within OKGIIK_01275at 279.689 kb on + strand, within OKGIIK_01275at 279.690 kb on - strand, within OKGIIK_01275at 279.690 kb on - strand, within OKGIIK_01275at 279.690 kb on - strand, within OKGIIK_01275at 279.690 kb on - strand, within OKGIIK_01275at 279.690 kb on - strand, within OKGIIK_01275at 279.690 kb on - strand, within OKGIIK_01275at 279.746 kb on + strand, within OKGIIK_01275at 279.746 kb on + strand, within OKGIIK_01275at 279.746 kb on + strand, within OKGIIK_01275at 279.747 kb on - strand, within OKGIIK_01275at 279.747 kb on - strand, within OKGIIK_01275at 279.754 kb on + strand, within OKGIIK_01275at 279.754 kb on + strand, within OKGIIK_01275at 279.754 kb on + strand, within OKGIIK_01275at 279.754 kb on + strand, within OKGIIK_01275at 279.754 kb on + strand, within OKGIIK_01275at 279.755 kb on - strand, within OKGIIK_01275at 279.755 kb on - strand, within OKGIIK_01275at 279.788 kb on + strand, within OKGIIK_01275at 279.788 kb on + strand, within OKGIIK_01275at 279.788 kb on + strand, within OKGIIK_01275at 279.788 kb on + strand, within OKGIIK_01275at 279.788 kb on + strand, within OKGIIK_01275at 279.788 kb on + strand, within OKGIIK_01275at 279.788 kb on + strand, within OKGIIK_01275at 279.788 kb on + strand, within OKGIIK_01275at 279.788 kb on + strand, within OKGIIK_01275at 279.789 kb on - strand, within OKGIIK_01275at 279.789 kb on - strand, within OKGIIK_01275at 279.789 kb on - strand, within OKGIIK_01275at 279.789 kb on - strand, within OKGIIK_01275at 279.789 kb on - strand, within OKGIIK_01275at 279.789 kb on - strand, within OKGIIK_01275at 279.789 kb on - strand, within OKGIIK_01275at 279.789 kb on - strand, within OKGIIK_01275at 279.789 kb on - strand, within OKGIIK_01275at 279.794 kb on + strand, within OKGIIK_01275at 279.794 kb on + strand, within OKGIIK_01275at 279.794 kb on + strand, within OKGIIK_01275at 279.794 kb on + strand, within OKGIIK_01275at 279.794 kb on + strand, within OKGIIK_01275at 279.794 kb on + strand, within OKGIIK_01275at 279.794 kb on + strand, within OKGIIK_01275at 279.794 kb on + strand, within OKGIIK_01275at 279.794 kb on + strand, within OKGIIK_01275at 279.794 kb on + strand, within OKGIIK_01275at 279.795 kb on - strand, within OKGIIK_01275at 279.795 kb on - strand, within OKGIIK_01275at 279.795 kb on - strand, within OKGIIK_01275at 279.795 kb on - strand, within OKGIIK_01275at 279.795 kb on - strand, within OKGIIK_01275at 279.795 kb on - strand, within OKGIIK_01275at 279.795 kb on - strand, within OKGIIK_01275at 279.795 kb on - strand, within OKGIIK_01275at 279.915 kb on + strandat 279.915 kb on + strandat 279.915 kb on + strandat 279.915 kb on + strandat 279.915 kb on + strandat 279.915 kb on + strandat 279.916 kb on - strandat 279.916 kb on - strandat 279.916 kb on - strandat 279.916 kb on - strandat 279.916 kb on - strandat 279.925 kb on + strandat 279.925 kb on + strandat 279.925 kb on + strandat 279.925 kb on + strandat 279.925 kb on + strandat 279.925 kb on + strandat 279.926 kb on - strandat 279.926 kb on - strandat 280.019 kb on - strandat 280.019 kb on - strandat 280.179 kb on + strandat 280.179 kb on + strandat 280.180 kb on - strandat 280.221 kb on + strandat 280.386 kb on - strandat 280.386 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM
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278,358 + OKGIIK_01265 0.72 -2.6
278,358 + OKGIIK_01265 0.72 +0.0
278,358 + OKGIIK_01265 0.72 -0.7
278,358 + OKGIIK_01265 0.72 -0.8
278,359 - OKGIIK_01265 0.72 -0.6
278,359 - OKGIIK_01265 0.72 -0.0
278,359 - OKGIIK_01265 0.72 -1.5
278,440 + OKGIIK_01265 0.76 -1.3
278,440 + OKGIIK_01265 0.76 -0.8
278,441 - OKGIIK_01265 0.76 +0.7
278,441 - OKGIIK_01265 0.76 +0.3
278,446 + OKGIIK_01265 0.76 -2.6
278,446 + OKGIIK_01265 0.76 -0.1
278,446 + OKGIIK_01265 0.76 +0.4
278,446 + OKGIIK_01265 0.76 -1.6
278,446 + OKGIIK_01265 0.76 -0.1
278,446 + OKGIIK_01265 0.76 -1.1
278,446 + OKGIIK_01265 0.76 +0.8
278,446 + OKGIIK_01265 0.76 -0.3
278,447 - OKGIIK_01265 0.76 -0.7
278,447 - OKGIIK_01265 0.76 -0.1
278,447 - OKGIIK_01265 0.76 +1.1
278,447 - OKGIIK_01265 0.76 -0.9
278,447 - OKGIIK_01265 0.76 +0.0
278,447 - OKGIIK_01265 0.76 -0.5
278,447 - OKGIIK_01265 0.76 +0.9
278,470 + OKGIIK_01265 0.77 -0.7
278,524 + OKGIIK_01265 0.80 +0.0
278,524 + OKGIIK_01265 0.80 +1.4
278,524 + OKGIIK_01265 0.80 -1.8
278,524 + OKGIIK_01265 0.80 -1.9
278,524 + OKGIIK_01265 0.80 -0.8
278,524 + OKGIIK_01265 0.80 -1.5
278,524 + OKGIIK_01265 0.80 -0.4
278,524 + OKGIIK_01265 0.80 -1.1
278,525 - OKGIIK_01265 0.80 -1.1
278,525 - OKGIIK_01265 0.80 +0.5
278,662 + OKGIIK_01265 0.87 +0.2
278,662 + OKGIIK_01265 0.87 -0.3
278,663 - OKGIIK_01265 0.87 -0.3
278,663 - OKGIIK_01265 0.87 -0.8
278,663 - OKGIIK_01265 0.87 +0.5
278,663 - OKGIIK_01265 0.87 -0.1
278,663 - OKGIIK_01265 0.87 -0.1
278,663 - OKGIIK_01265 0.87 -1.6
278,663 - OKGIIK_01265 0.87 -0.8
278,663 - OKGIIK_01265 0.87 -1.6
278,750 + -0.2
278,751 - +0.3
278,772 + -1.1
278,947 + +0.9
278,947 + -0.2
278,947 + -0.9
278,947 + -0.1
278,947 + +0.1
278,947 + +0.5
278,947 + -0.5
278,948 - -0.5
278,948 - +1.1
278,948 - +0.1
278,948 - -0.5
278,948 - -1.8
278,948 - -1.3
279,019 - +1.1
279,280 - -1.6
279,322 - OKGIIK_01270 0.13 -2.5
279,357 - OKGIIK_01270 0.23 -0.5
279,357 - OKGIIK_01270 0.23 -2.8
279,357 - OKGIIK_01270 0.23 -3.6
279,357 - OKGIIK_01270 0.23 +0.5
279,357 - OKGIIK_01270 0.23 +0.2
279,357 - OKGIIK_01270 0.23 +1.1
279,689 + OKGIIK_01275 0.24 -1.9
279,689 + OKGIIK_01275 0.24 +1.5
279,689 + OKGIIK_01275 0.24 +0.2
279,689 + OKGIIK_01275 0.24 -0.2
279,689 + OKGIIK_01275 0.24 -0.3
279,689 + OKGIIK_01275 0.24 -1.9
279,690 - OKGIIK_01275 0.25 -0.2
279,690 - OKGIIK_01275 0.25 -0.3
279,690 - OKGIIK_01275 0.25 -1.4
279,690 - OKGIIK_01275 0.25 -0.3
279,690 - OKGIIK_01275 0.25 -0.5
279,690 - OKGIIK_01275 0.25 +0.9
279,746 + OKGIIK_01275 0.43 +0.7
279,746 + OKGIIK_01275 0.43 -0.8
279,746 + OKGIIK_01275 0.43 -1.3
279,747 - OKGIIK_01275 0.44 -0.6
279,747 - OKGIIK_01275 0.44 +0.4
279,754 + OKGIIK_01275 0.46 -0.5
279,754 + OKGIIK_01275 0.46 +0.2
279,754 + OKGIIK_01275 0.46 -0.3
279,754 + OKGIIK_01275 0.46 -1.2
279,754 + OKGIIK_01275 0.46 -2.2
279,755 - OKGIIK_01275 0.46 +0.9
279,755 - OKGIIK_01275 0.46 -2.9
279,788 + OKGIIK_01275 0.57 +1.7
279,788 + OKGIIK_01275 0.57 -0.1
279,788 + OKGIIK_01275 0.57 -0.7
279,788 + OKGIIK_01275 0.57 +0.9
279,788 + OKGIIK_01275 0.57 -1.1
279,788 + OKGIIK_01275 0.57 +1.1
279,788 + OKGIIK_01275 0.57 -0.4
279,788 + OKGIIK_01275 0.57 -0.2
279,788 + OKGIIK_01275 0.57 -0.3
279,789 - OKGIIK_01275 0.58 +0.5
279,789 - OKGIIK_01275 0.58 -0.1
279,789 - OKGIIK_01275 0.58 -1.3
279,789 - OKGIIK_01275 0.58 +0.9
279,789 - OKGIIK_01275 0.58 +0.6
279,789 - OKGIIK_01275 0.58 +0.5
279,789 - OKGIIK_01275 0.58 +0.2
279,789 - OKGIIK_01275 0.58 +1.5
279,789 - OKGIIK_01275 0.58 -0.4
279,794 + OKGIIK_01275 0.59 -1.6
279,794 + OKGIIK_01275 0.59 +0.4
279,794 + OKGIIK_01275 0.59 +0.3
279,794 + OKGIIK_01275 0.59 -0.2
279,794 + OKGIIK_01275 0.59 -1.0
279,794 + OKGIIK_01275 0.59 +0.9
279,794 + OKGIIK_01275 0.59 -0.6
279,794 + OKGIIK_01275 0.59 -0.5
279,794 + OKGIIK_01275 0.59 +0.5
279,794 + OKGIIK_01275 0.59 -0.2
279,795 - OKGIIK_01275 0.60 -1.8
279,795 - OKGIIK_01275 0.60 +0.2
279,795 - OKGIIK_01275 0.60 -1.1
279,795 - OKGIIK_01275 0.60 -0.7
279,795 - OKGIIK_01275 0.60 +0.3
279,795 - OKGIIK_01275 0.60 +0.0
279,795 - OKGIIK_01275 0.60 -1.5
279,795 - OKGIIK_01275 0.60 -0.5
279,915 + +0.9
279,915 + +0.1
279,915 + +0.5
279,915 + -1.3
279,915 + +0.1
279,915 + -1.4
279,916 - +0.3
279,916 - -1.9
279,916 - -0.1
279,916 - -1.6
279,916 - -0.4
279,925 + -0.6
279,925 + -0.0
279,925 + -0.8
279,925 + -0.1
279,925 + +0.9
279,925 + -0.3
279,926 - -0.2
279,926 - +0.1
280,019 - -0.5
280,019 - -2.1
280,179 + -1.6
280,179 + +1.5
280,180 - +1.2
280,221 + -0.4
280,386 - -0.9
280,386 - -1.1

Or see this region's nucleotide sequence