Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01190

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_01185 and OKGIIK_01190 are separated by 13 nucleotidesOKGIIK_01190 and OKGIIK_01195 are separated by 284 nucleotides OKGIIK_01185: OKGIIK_01185 - Glycosyl transferase, at 255,329 to 256,732 _01185 OKGIIK_01190: OKGIIK_01190 - Transport permease protein, at 256,746 to 257,540 _01190 OKGIIK_01195: OKGIIK_01195 - ABC transporter, ATP-binding protein, at 257,825 to 258,763 _01195 Position (kb) 256 257 258Strain fitness (log2 ratio) -2 -1 0 1 2at 255.764 kb on + strand, within OKGIIK_01185at 255.765 kb on - strand, within OKGIIK_01185at 255.778 kb on - strand, within OKGIIK_01185at 255.848 kb on + strand, within OKGIIK_01185at 255.848 kb on + strand, within OKGIIK_01185at 255.849 kb on - strand, within OKGIIK_01185at 255.849 kb on - strand, within OKGIIK_01185at 255.849 kb on - strand, within OKGIIK_01185at 255.849 kb on - strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 256.079 kb on - strand, within OKGIIK_01185at 256.227 kb on + strand, within OKGIIK_01185at 256.322 kb on + strand, within OKGIIK_01185at 256.322 kb on + strand, within OKGIIK_01185at 256.323 kb on - strand, within OKGIIK_01185at 256.323 kb on - strand, within OKGIIK_01185at 256.449 kb on + strand, within OKGIIK_01185at 256.449 kb on + strand, within OKGIIK_01185at 256.449 kb on + strand, within OKGIIK_01185at 256.449 kb on + strand, within OKGIIK_01185at 256.450 kb on - strand, within OKGIIK_01185at 256.450 kb on - strand, within OKGIIK_01185at 256.450 kb on - strand, within OKGIIK_01185at 256.457 kb on + strand, within OKGIIK_01185at 256.457 kb on + strand, within OKGIIK_01185at 256.458 kb on - strand, within OKGIIK_01185at 256.458 kb on - strand, within OKGIIK_01185at 256.458 kb on - strand, within OKGIIK_01185at 256.487 kb on + strand, within OKGIIK_01185at 256.487 kb on + strand, within OKGIIK_01185at 256.487 kb on + strand, within OKGIIK_01185at 256.487 kb on + strand, within OKGIIK_01185at 256.487 kb on + strand, within OKGIIK_01185at 256.487 kb on + strand, within OKGIIK_01185at 256.488 kb on - strand, within OKGIIK_01185at 256.488 kb on - strand, within OKGIIK_01185at 256.570 kb on + strand, within OKGIIK_01185at 256.579 kb on + strand, within OKGIIK_01185at 256.579 kb on + strand, within OKGIIK_01185at 256.677 kb on + strandat 256.678 kb on - strandat 256.726 kb on + strandat 256.726 kb on + strandat 256.726 kb on + strandat 256.730 kb on + strandat 256.730 kb on + strandat 256.730 kb on + strandat 256.731 kb on - strandat 256.888 kb on - strand, within OKGIIK_01190at 256.888 kb on - strand, within OKGIIK_01190at 256.951 kb on - strand, within OKGIIK_01190at 256.951 kb on - strand, within OKGIIK_01190at 257.085 kb on - strand, within OKGIIK_01190at 257.248 kb on + strand, within OKGIIK_01190at 257.328 kb on + strand, within OKGIIK_01190at 257.589 kb on - strandat 257.802 kb on + strandat 257.802 kb on + strandat 257.951 kb on + strand, within OKGIIK_01195at 257.975 kb on + strand, within OKGIIK_01195at 258.075 kb on - strand, within OKGIIK_01195at 258.235 kb on + strand, within OKGIIK_01195at 258.244 kb on - strand, within OKGIIK_01195at 258.245 kb on + strand, within OKGIIK_01195at 258.246 kb on - strand, within OKGIIK_01195at 258.246 kb on - strand, within OKGIIK_01195at 258.275 kb on - strand, within OKGIIK_01195at 258.278 kb on - strand, within OKGIIK_01195

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM
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255,764 + OKGIIK_01185 0.31 -1.8
255,765 - OKGIIK_01185 0.31 -1.5
255,778 - OKGIIK_01185 0.32 +0.6
255,848 + OKGIIK_01185 0.37 -0.4
255,848 + OKGIIK_01185 0.37 -0.5
255,849 - OKGIIK_01185 0.37 -0.8
255,849 - OKGIIK_01185 0.37 +1.2
255,849 - OKGIIK_01185 0.37 -0.8
255,849 - OKGIIK_01185 0.37 -0.3
255,967 + OKGIIK_01185 0.45 -1.1
255,967 + OKGIIK_01185 0.45 +0.3
255,967 + OKGIIK_01185 0.45 -1.3
255,967 + OKGIIK_01185 0.45 -0.2
255,967 + OKGIIK_01185 0.45 -0.8
255,967 + OKGIIK_01185 0.45 -0.5
256,079 - OKGIIK_01185 0.53 -0.3
256,227 + OKGIIK_01185 0.64 +0.4
256,322 + OKGIIK_01185 0.71 +0.2
256,322 + OKGIIK_01185 0.71 -0.8
256,323 - OKGIIK_01185 0.71 -1.8
256,323 - OKGIIK_01185 0.71 +0.0
256,449 + OKGIIK_01185 0.80 -0.4
256,449 + OKGIIK_01185 0.80 -1.1
256,449 + OKGIIK_01185 0.80 -0.5
256,449 + OKGIIK_01185 0.80 -1.3
256,450 - OKGIIK_01185 0.80 -1.8
256,450 - OKGIIK_01185 0.80 -2.4
256,450 - OKGIIK_01185 0.80 -0.8
256,457 + OKGIIK_01185 0.80 +0.8
256,457 + OKGIIK_01185 0.80 -1.5
256,458 - OKGIIK_01185 0.80 -1.5
256,458 - OKGIIK_01185 0.80 -1.5
256,458 - OKGIIK_01185 0.80 +0.5
256,487 + OKGIIK_01185 0.82 -1.5
256,487 + OKGIIK_01185 0.82 -0.1
256,487 + OKGIIK_01185 0.82 -1.5
256,487 + OKGIIK_01185 0.82 -1.9
256,487 + OKGIIK_01185 0.82 -0.8
256,487 + OKGIIK_01185 0.82 -0.5
256,488 - OKGIIK_01185 0.83 -1.9
256,488 - OKGIIK_01185 0.83 +0.4
256,570 + OKGIIK_01185 0.88 -0.6
256,579 + OKGIIK_01185 0.89 +0.2
256,579 + OKGIIK_01185 0.89 -0.9
256,677 + +2.3
256,678 - +0.8
256,726 + -0.8
256,726 + -2.4
256,726 + -0.1
256,730 + -1.5
256,730 + -1.1
256,730 + +0.5
256,731 - -1.8
256,888 - OKGIIK_01190 0.18 -1.6
256,888 - OKGIIK_01190 0.18 -0.5
256,951 - OKGIIK_01190 0.26 +0.2
256,951 - OKGIIK_01190 0.26 -0.5
257,085 - OKGIIK_01190 0.43 +0.4
257,248 + OKGIIK_01190 0.63 -0.7
257,328 + OKGIIK_01190 0.73 -1.6
257,589 - -1.9
257,802 + +1.2
257,802 + -0.8
257,951 + OKGIIK_01195 0.13 -2.2
257,975 + OKGIIK_01195 0.16 -2.2
258,075 - OKGIIK_01195 0.27 -1.6
258,235 + OKGIIK_01195 0.44 -1.1
258,244 - OKGIIK_01195 0.45 -0.8
258,245 + OKGIIK_01195 0.45 -0.5
258,246 - OKGIIK_01195 0.45 -0.8
258,246 - OKGIIK_01195 0.45 -0.1
258,275 - OKGIIK_01195 0.48 -0.6
258,278 - OKGIIK_01195 0.48 -0.5

Or see this region's nucleotide sequence