Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hop and OKGIIK_00160 are separated by 58 nucleotides OKGIIK_00160 and OKGIIK_00165 are separated by 95 nucleotides
OKGIIK_00155: hop - ribonucleoside-diphosphate reductase, at 38,592 to 41,864
hop
OKGIIK_00160: OKGIIK_00160 - hypothetical protein, at 41,923 to 42,576
_00160
OKGIIK_00165: OKGIIK_00165 - NrdJb, at 42,672 to 43,424
_00165
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 40.954 kb on - strand, within hop at 41.076 kb on + strand, within hop at 41.076 kb on + strand, within hop at 41.076 kb on + strand, within hop at 41.076 kb on + strand, within hop at 41.130 kb on + strand, within hop at 41.130 kb on + strand, within hop at 41.130 kb on + strand, within hop at 41.130 kb on + strand, within hop at 41.131 kb on - strand, within hop at 41.131 kb on - strand, within hop at 41.175 kb on + strand, within hop at 41.175 kb on + strand, within hop at 41.175 kb on + strand, within hop at 41.175 kb on + strand, within hop at 41.175 kb on + strand, within hop at 41.175 kb on + strand, within hop at 41.176 kb on - strand, within hop at 41.176 kb on - strand, within hop at 41.176 kb on - strand, within hop at 41.176 kb on - strand, within hop at 41.176 kb on - strand, within hop at 41.176 kb on - strand, within hop at 41.176 kb on - strand, within hop at 41.176 kb on - strand, within hop at 41.176 kb on - strand, within hop at 41.184 kb on + strand, within hop at 41.184 kb on + strand, within hop at 41.184 kb on + strand, within hop at 41.184 kb on + strand, within hop at 41.184 kb on + strand, within hop at 41.184 kb on + strand, within hop at 41.184 kb on + strand, within hop at 41.184 kb on + strand, within hop at 41.185 kb on - strand, within hop at 41.185 kb on - strand, within hop at 41.185 kb on - strand, within hop at 41.185 kb on - strand, within hop at 41.185 kb on - strand, within hop at 41.185 kb on - strand, within hop at 41.185 kb on - strand, within hop at 41.277 kb on - strand, within hop at 41.346 kb on + strand, within hop at 41.346 kb on + strand, within hop at 41.346 kb on + strand, within hop at 41.346 kb on + strand, within hop at 41.346 kb on + strand, within hop at 41.346 kb on + strand, within hop at 41.346 kb on + strand, within hop at 41.346 kb on + strand, within hop at 41.346 kb on + strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.487 kb on + strand, within hop at 41.488 kb on - strand, within hop at 41.488 kb on - strand, within hop at 41.488 kb on - strand, within hop at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.631 kb on + strand at 41.631 kb on + strand at 41.631 kb on + strand at 41.631 kb on + strand at 41.631 kb on + strand at 41.632 kb on - strand at 41.632 kb on - strand at 41.632 kb on - strand at 41.632 kb on - strand at 41.632 kb on - strand at 41.632 kb on - strand at 41.632 kb on - strand at 41.632 kb on - strand at 41.632 kb on - strand at 41.637 kb on + strand at 41.637 kb on + strand at 41.637 kb on + strand at 41.637 kb on + strand at 41.637 kb on + strand at 41.638 kb on - strand at 41.638 kb on - strand at 41.638 kb on - strand at 41.638 kb on - strand at 41.733 kb on + strand at 41.733 kb on + strand at 41.757 kb on - strand at 41.757 kb on - strand at 41.794 kb on - strand at 41.794 kb on - strand at 41.794 kb on - strand at 41.794 kb on - strand at 41.847 kb on + strand at 41.848 kb on - strand at 41.848 kb on - strand at 41.848 kb on - strand at 41.848 kb on - strand at 41.848 kb on - strand at 41.850 kb on + strand at 41.850 kb on + strand at 41.850 kb on + strand at 41.850 kb on + strand at 41.851 kb on - strand at 41.851 kb on - strand at 41.851 kb on - strand at 41.851 kb on - strand at 42.112 kb on - strand, within OKGIIK_00160 at 42.575 kb on - strand at 42.575 kb on - strand at 42.575 kb on - strand at 42.575 kb on - strand at 42.575 kb on - strand at 42.575 kb on - strand at 42.876 kb on + strand, within OKGIIK_00165 at 42.876 kb on + strand, within OKGIIK_00165 at 42.876 kb on + strand, within OKGIIK_00165 at 42.876 kb on + strand, within OKGIIK_00165 at 42.876 kb on + strand, within OKGIIK_00165 at 42.876 kb on + strand, within OKGIIK_00165 at 42.876 kb on + strand, within OKGIIK_00165 at 42.877 kb on - strand, within OKGIIK_00165 at 42.877 kb on - strand, within OKGIIK_00165 at 43.083 kb on + strand, within OKGIIK_00165 at 43.083 kb on + strand, within OKGIIK_00165 at 43.084 kb on - strand, within OKGIIK_00165 at 43.084 kb on - strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.230 kb on + strand, within OKGIIK_00165 at 43.230 kb on + strand, within OKGIIK_00165 at 43.231 kb on - strand, within OKGIIK_00165 at 43.431 kb on + strand at 43.431 kb on + strand at 43.431 kb on + strand at 43.431 kb on + strand at 43.448 kb on + strand at 43.448 kb on + strand at 43.448 kb on + strand at 43.449 kb on - strand at 43.449 kb on - strand at 43.489 kb on + strand at 43.490 kb on - strand at 43.537 kb on + strand at 43.538 kb on - strand at 43.538 kb on - strand at 43.562 kb on + strand at 43.562 kb on + strand at 43.562 kb on + strand at 43.562 kb on + strand at 43.562 kb on + strand at 43.563 kb on - strand at 43.563 kb on - strand at 43.563 kb on - strand at 43.563 kb on - strand at 43.563 kb on - strand at 43.563 kb on - strand at 43.563 kb on - strand at 43.563 kb on - strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.566 kb on - strand at 43.566 kb on - strand at 43.566 kb on - strand at 43.566 kb on - strand at 43.566 kb on - strand at 43.566 kb on - strand at 43.566 kb on - strand at 43.566 kb on - strand at 43.566 kb on - strand at 43.566 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 40,954 - hop OKGIIK_00155 0.72 -0.7 41,076 + hop OKGIIK_00155 0.76 -0.7 41,076 + hop OKGIIK_00155 0.76 -0.2 41,076 + hop OKGIIK_00155 0.76 +0.5 41,076 + hop OKGIIK_00155 0.76 -0.6 41,130 + hop OKGIIK_00155 0.78 +2.3 41,130 + hop OKGIIK_00155 0.78 -0.5 41,130 + hop OKGIIK_00155 0.78 +1.2 41,130 + hop OKGIIK_00155 0.78 -0.2 41,131 - hop OKGIIK_00155 0.78 -0.3 41,131 - hop OKGIIK_00155 0.78 -1.6 41,175 + hop OKGIIK_00155 0.79 +0.2 41,175 + hop OKGIIK_00155 0.79 +1.1 41,175 + hop OKGIIK_00155 0.79 +0.9 41,175 + hop OKGIIK_00155 0.79 +1.3 41,175 + hop OKGIIK_00155 0.79 -0.5 41,175 + hop OKGIIK_00155 0.79 -0.5 41,176 - hop OKGIIK_00155 0.79 -0.1 41,176 - hop OKGIIK_00155 0.79 +0.8 41,176 - hop OKGIIK_00155 0.79 -0.3 41,176 - hop OKGIIK_00155 0.79 +0.2 41,176 - hop OKGIIK_00155 0.79 +0.9 41,176 - hop OKGIIK_00155 0.79 +1.1 41,176 - hop OKGIIK_00155 0.79 -0.5 41,176 - hop OKGIIK_00155 0.79 -0.3 41,176 - hop OKGIIK_00155 0.79 -0.2 41,184 + hop OKGIIK_00155 0.79 -0.4 41,184 + hop OKGIIK_00155 0.79 +1.9 41,184 + hop OKGIIK_00155 0.79 -0.1 41,184 + hop OKGIIK_00155 0.79 -1.1 41,184 + hop OKGIIK_00155 0.79 +0.7 41,184 + hop OKGIIK_00155 0.79 +0.9 41,184 + hop OKGIIK_00155 0.79 -2.3 41,184 + hop OKGIIK_00155 0.79 -0.0 41,185 - hop OKGIIK_00155 0.79 -1.4 41,185 - hop OKGIIK_00155 0.79 +0.5 41,185 - hop OKGIIK_00155 0.79 -0.4 41,185 - hop OKGIIK_00155 0.79 -0.3 41,185 - hop OKGIIK_00155 0.79 -1.9 41,185 - hop OKGIIK_00155 0.79 -0.7 41,185 - hop OKGIIK_00155 0.79 -0.0 41,277 - hop OKGIIK_00155 0.82 -0.3 41,346 + hop OKGIIK_00155 0.84 +1.1 41,346 + hop OKGIIK_00155 0.84 -0.5 41,346 + hop OKGIIK_00155 0.84 +0.1 41,346 + hop OKGIIK_00155 0.84 -2.0 41,346 + hop OKGIIK_00155 0.84 -0.6 41,346 + hop OKGIIK_00155 0.84 -0.5 41,346 + hop OKGIIK_00155 0.84 +2.1 41,346 + hop OKGIIK_00155 0.84 -1.3 41,346 + hop OKGIIK_00155 0.84 -0.8 41,347 - hop OKGIIK_00155 0.84 +0.5 41,347 - hop OKGIIK_00155 0.84 -0.5 41,347 - hop OKGIIK_00155 0.84 -0.3 41,347 - hop OKGIIK_00155 0.84 +0.7 41,347 - hop OKGIIK_00155 0.84 +0.4 41,347 - hop OKGIIK_00155 0.84 +0.7 41,347 - hop OKGIIK_00155 0.84 +0.8 41,347 - hop OKGIIK_00155 0.84 +0.0 41,347 - hop OKGIIK_00155 0.84 -0.5 41,347 - hop OKGIIK_00155 0.84 +0.3 41,347 - hop OKGIIK_00155 0.84 +2.0 41,347 - hop OKGIIK_00155 0.84 +1.2 41,347 - hop OKGIIK_00155 0.84 -0.2 41,347 - hop OKGIIK_00155 0.84 -0.1 41,487 + hop OKGIIK_00155 0.88 +0.9 41,488 - hop OKGIIK_00155 0.88 +0.4 41,488 - hop OKGIIK_00155 0.88 +1.1 41,488 - hop OKGIIK_00155 0.88 -1.9 41,625 + -0.2 41,625 + +0.1 41,625 + -0.2 41,625 + +1.2 41,625 + -1.0 41,625 + -0.6 41,625 + -0.4 41,625 + -0.9 41,625 + +1.2 41,625 + +0.2 41,625 + -0.4 41,625 + -0.5 41,625 + +0.1 41,625 + -0.3 41,625 + -1.3 41,625 + -0.5 41,625 + -0.1 41,625 + -0.9 41,625 + -0.3 41,625 + +0.4 41,625 + +0.5 41,625 + +0.7 41,625 + +0.7 41,625 + -0.8 41,625 + +0.3 41,625 + -0.8 41,625 + -1.5 41,625 + -1.6 41,625 + -0.1 41,626 - +0.8 41,626 - +0.5 41,626 - +0.0 41,626 - +0.5 41,626 - +1.5 41,626 - -2.3 41,626 - -0.9 41,626 - +0.7 41,626 - -1.3 41,626 - -1.2 41,626 - +0.5 41,626 - +0.5 41,626 - -0.5 41,626 - -2.2 41,626 - +0.0 41,626 - -1.3 41,626 - -0.5 41,626 - -0.1 41,631 + -1.5 41,631 + +0.1 41,631 + -0.5 41,631 + -0.1 41,631 + -1.9 41,632 - +0.5 41,632 - -1.6 41,632 - -0.6 41,632 - -1.5 41,632 - -0.8 41,632 - -2.0 41,632 - +0.3 41,632 - +0.0 41,632 - +0.4 41,637 + +0.6 41,637 + +0.9 41,637 + -0.5 41,637 + +0.5 41,637 + +0.9 41,638 - -0.9 41,638 - -1.1 41,638 - -1.9 41,638 - -2.1 41,733 + +1.0 41,733 + +1.4 41,757 - +0.5 41,757 - +1.5 41,794 - -0.8 41,794 - -0.6 41,794 - -0.8 41,794 - -0.1 41,847 + -0.2 41,848 - -0.1 41,848 - -2.2 41,848 - -0.8 41,848 - -0.5 41,848 - +0.6 41,850 + -0.7 41,850 + -0.2 41,850 + +0.5 41,850 + -0.2 41,851 - -1.3 41,851 - -1.5 41,851 - +0.2 41,851 - +0.9 42,112 - OKGIIK_00160 0.29 +0.8 42,575 - -0.1 42,575 - -1.6 42,575 - -0.7 42,575 - +2.0 42,575 - +0.1 42,575 - -1.1 42,876 + OKGIIK_00165 0.27 -0.3 42,876 + OKGIIK_00165 0.27 -1.4 42,876 + OKGIIK_00165 0.27 -2.9 42,876 + OKGIIK_00165 0.27 +0.5 42,876 + OKGIIK_00165 0.27 -0.3 42,876 + OKGIIK_00165 0.27 -0.5 42,876 + OKGIIK_00165 0.27 +0.5 42,877 - OKGIIK_00165 0.27 -0.9 42,877 - OKGIIK_00165 0.27 +1.2 43,083 + OKGIIK_00165 0.55 +1.4 43,083 + OKGIIK_00165 0.55 +1.5 43,084 - OKGIIK_00165 0.55 +0.4 43,084 - OKGIIK_00165 0.55 -0.7 43,104 + OKGIIK_00165 0.57 -1.1 43,104 + OKGIIK_00165 0.57 -0.4 43,104 + OKGIIK_00165 0.57 +0.4 43,104 + OKGIIK_00165 0.57 -0.5 43,104 + OKGIIK_00165 0.57 +1.1 43,104 + OKGIIK_00165 0.57 -0.2 43,104 + OKGIIK_00165 0.57 +1.8 43,104 + OKGIIK_00165 0.57 -0.1 43,104 + OKGIIK_00165 0.57 +0.1 43,104 + OKGIIK_00165 0.57 +1.3 43,104 + OKGIIK_00165 0.57 -0.1 43,105 - OKGIIK_00165 0.58 +0.9 43,105 - OKGIIK_00165 0.58 -0.2 43,105 - OKGIIK_00165 0.58 +1.2 43,105 - OKGIIK_00165 0.58 -0.1 43,105 - OKGIIK_00165 0.58 +0.3 43,105 - OKGIIK_00165 0.58 +0.0 43,105 - OKGIIK_00165 0.58 -0.1 43,105 - OKGIIK_00165 0.58 -0.2 43,105 - OKGIIK_00165 0.58 +0.3 43,230 + OKGIIK_00165 0.74 -0.3 43,230 + OKGIIK_00165 0.74 -0.8 43,231 - OKGIIK_00165 0.74 +0.0 43,431 + -0.5 43,431 + +0.9 43,431 + +0.5 43,431 + +1.5 43,448 + +0.3 43,448 + -2.0 43,448 + -1.6 43,449 - -1.6 43,449 - +0.3 43,489 + +0.9 43,490 - -1.6 43,537 + -1.0 43,538 - +1.5 43,538 - +0.1 43,562 + +0.8 43,562 + +0.1 43,562 + +0.0 43,562 + -0.8 43,562 + -1.3 43,563 - -1.0 43,563 - -1.3 43,563 - -1.6 43,563 - +0.7 43,563 - -0.6 43,563 - -0.5 43,563 - +1.3 43,563 - -0.5 43,565 + +0.0 43,565 + -0.1 43,565 + +0.8 43,565 + +0.5 43,565 + +1.0 43,565 + -0.1 43,565 + +1.7 43,565 + -0.6 43,565 + -0.9 43,565 + +0.1 43,565 + -0.2 43,565 + -0.8 43,565 + -0.1 43,565 + -2.4 43,565 + +1.5 43,565 + -0.5 43,565 + -0.7 43,566 - -1.5 43,566 - -0.2 43,566 - -0.9 43,566 - +0.1 43,566 - -0.3 43,566 - -1.8 43,566 - -1.8 43,566 - -0.7 43,566 - -0.1 43,566 - -0.3
Or see this region's nucleotide sequence