Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lipA and ctpA are separated by 8 nucleotides ctpA and OKGIIK_00115 are separated by 50 nucleotides
OKGIIK_00105: lipA - lipoyl synthase, at 23,301 to 24,311
lipA
OKGIIK_00110: ctpA - C-terminal processing protease CtpA/Prc, contains a PDZ domain, at 24,320 to 26,560
ctpA
OKGIIK_00115: OKGIIK_00115 - Sulfotransferase, at 26,611 to 28,485
_00115
Position (kb) 24
25
26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 23.718 kb on + strand, within lipA at 23.718 kb on + strand, within lipA at 23.718 kb on + strand, within lipA at 23.718 kb on + strand, within lipA at 23.718 kb on + strand, within lipA at 23.718 kb on + strand, within lipA at 23.718 kb on + strand, within lipA at 23.718 kb on + strand, within lipA at 23.719 kb on - strand, within lipA at 23.719 kb on - strand, within lipA at 23.719 kb on - strand, within lipA at 23.940 kb on + strand, within lipA at 23.967 kb on + strand, within lipA at 23.967 kb on + strand, within lipA at 23.968 kb on - strand, within lipA at 24.070 kb on + strand, within lipA at 24.070 kb on + strand, within lipA at 24.071 kb on - strand, within lipA at 24.071 kb on - strand, within lipA at 24.071 kb on - strand, within lipA at 24.129 kb on + strand, within lipA at 24.129 kb on + strand, within lipA at 24.129 kb on + strand, within lipA at 24.129 kb on + strand, within lipA at 24.129 kb on + strand, within lipA at 24.129 kb on + strand, within lipA at 24.130 kb on - strand, within lipA at 24.130 kb on - strand, within lipA at 24.130 kb on - strand, within lipA at 24.261 kb on + strand at 24.261 kb on + strand at 24.500 kb on + strand at 24.501 kb on - strand at 24.687 kb on - strand, within ctpA at 24.717 kb on - strand, within ctpA at 24.717 kb on - strand, within ctpA at 24.717 kb on - strand, within ctpA at 24.717 kb on - strand, within ctpA at 24.768 kb on - strand, within ctpA at 25.448 kb on + strand, within ctpA at 25.449 kb on - strand, within ctpA at 25.487 kb on + strand, within ctpA at 25.781 kb on + strand, within ctpA at 25.782 kb on - strand, within ctpA at 26.057 kb on + strand, within ctpA at 26.085 kb on - strand, within ctpA at 26.315 kb on - strand, within ctpA at 26.612 kb on + strand at 26.621 kb on + strand at 26.621 kb on + strand at 26.650 kb on + strand at 26.681 kb on + strand at 26.681 kb on + strand at 26.735 kb on + strand at 26.735 kb on + strand at 26.735 kb on + strand at 26.735 kb on + strand at 26.735 kb on + strand at 26.735 kb on + strand at 26.735 kb on + strand at 26.735 kb on + strand at 26.736 kb on - strand at 26.736 kb on - strand at 26.736 kb on - strand at 26.736 kb on - strand at 26.736 kb on - strand at 26.736 kb on - strand at 26.736 kb on - strand at 26.736 kb on - strand at 26.736 kb on - strand at 26.736 kb on - strand at 26.736 kb on - strand at 26.736 kb on - strand at 26.736 kb on - strand at 26.867 kb on + strand, within OKGIIK_00115 at 26.882 kb on - strand, within OKGIIK_00115 at 26.912 kb on + strand, within OKGIIK_00115 at 26.912 kb on + strand, within OKGIIK_00115 at 26.912 kb on + strand, within OKGIIK_00115 at 26.912 kb on + strand, within OKGIIK_00115 at 26.912 kb on + strand, within OKGIIK_00115 at 26.913 kb on - strand, within OKGIIK_00115 at 26.913 kb on - strand, within OKGIIK_00115 at 26.913 kb on - strand, within OKGIIK_00115 at 26.936 kb on + strand, within OKGIIK_00115 at 26.936 kb on + strand, within OKGIIK_00115 at 26.936 kb on + strand, within OKGIIK_00115 at 26.936 kb on + strand, within OKGIIK_00115 at 26.936 kb on + strand, within OKGIIK_00115 at 26.936 kb on + strand, within OKGIIK_00115 at 26.937 kb on - strand, within OKGIIK_00115 at 26.937 kb on - strand, within OKGIIK_00115 at 26.937 kb on - strand, within OKGIIK_00115 at 26.937 kb on - strand, within OKGIIK_00115 at 26.937 kb on - strand, within OKGIIK_00115 at 26.937 kb on - strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.005 kb on + strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.006 kb on - strand, within OKGIIK_00115 at 27.167 kb on + strand, within OKGIIK_00115 at 27.167 kb on + strand, within OKGIIK_00115 at 27.167 kb on + strand, within OKGIIK_00115 at 27.167 kb on + strand, within OKGIIK_00115 at 27.167 kb on + strand, within OKGIIK_00115 at 27.167 kb on + strand, within OKGIIK_00115 at 27.167 kb on + strand, within OKGIIK_00115 at 27.167 kb on + strand, within OKGIIK_00115 at 27.168 kb on - strand, within OKGIIK_00115 at 27.168 kb on - strand, within OKGIIK_00115 at 27.168 kb on - strand, within OKGIIK_00115 at 27.168 kb on - strand, within OKGIIK_00115 at 27.168 kb on - strand, within OKGIIK_00115 at 27.168 kb on - strand, within OKGIIK_00115 at 27.168 kb on - strand, within OKGIIK_00115 at 27.410 kb on + strand, within OKGIIK_00115 at 27.410 kb on + strand, within OKGIIK_00115 at 27.411 kb on - strand, within OKGIIK_00115 at 27.411 kb on - strand, within OKGIIK_00115 at 27.411 kb on - strand, within OKGIIK_00115 at 27.424 kb on + strand, within OKGIIK_00115 at 27.424 kb on + strand, within OKGIIK_00115 at 27.483 kb on + strand, within OKGIIK_00115
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 23,718 + lipA OKGIIK_00105 0.41 +0.2 23,718 + lipA OKGIIK_00105 0.41 +0.5 23,718 + lipA OKGIIK_00105 0.41 -1.0 23,718 + lipA OKGIIK_00105 0.41 +0.3 23,718 + lipA OKGIIK_00105 0.41 +0.4 23,718 + lipA OKGIIK_00105 0.41 +0.5 23,718 + lipA OKGIIK_00105 0.41 -0.2 23,718 + lipA OKGIIK_00105 0.41 -0.6 23,719 - lipA OKGIIK_00105 0.41 -1.1 23,719 - lipA OKGIIK_00105 0.41 +1.9 23,719 - lipA OKGIIK_00105 0.41 -1.3 23,940 + lipA OKGIIK_00105 0.63 +1.0 23,967 + lipA OKGIIK_00105 0.66 -0.5 23,967 + lipA OKGIIK_00105 0.66 -0.9 23,968 - lipA OKGIIK_00105 0.66 +0.8 24,070 + lipA OKGIIK_00105 0.76 +0.4 24,070 + lipA OKGIIK_00105 0.76 -0.5 24,071 - lipA OKGIIK_00105 0.76 -0.2 24,071 - lipA OKGIIK_00105 0.76 +0.5 24,071 - lipA OKGIIK_00105 0.76 -1.2 24,129 + lipA OKGIIK_00105 0.82 +1.0 24,129 + lipA OKGIIK_00105 0.82 +0.6 24,129 + lipA OKGIIK_00105 0.82 +0.7 24,129 + lipA OKGIIK_00105 0.82 +1.3 24,129 + lipA OKGIIK_00105 0.82 -0.8 24,129 + lipA OKGIIK_00105 0.82 +0.6 24,130 - lipA OKGIIK_00105 0.82 +0.1 24,130 - lipA OKGIIK_00105 0.82 -0.6 24,130 - lipA OKGIIK_00105 0.82 -1.6 24,261 + +0.2 24,261 + +0.2 24,500 + +1.3 24,501 - -1.5 24,687 - ctpA OKGIIK_00110 0.16 -0.5 24,717 - ctpA OKGIIK_00110 0.18 -1.5 24,717 - ctpA OKGIIK_00110 0.18 -0.5 24,717 - ctpA OKGIIK_00110 0.18 -0.8 24,717 - ctpA OKGIIK_00110 0.18 -0.4 24,768 - ctpA OKGIIK_00110 0.20 -0.9 25,448 + ctpA OKGIIK_00110 0.50 -0.1 25,449 - ctpA OKGIIK_00110 0.50 -0.5 25,487 + ctpA OKGIIK_00110 0.52 -1.8 25,781 + ctpA OKGIIK_00110 0.65 -1.3 25,782 - ctpA OKGIIK_00110 0.65 -1.1 26,057 + ctpA OKGIIK_00110 0.78 +2.1 26,085 - ctpA OKGIIK_00110 0.79 -1.8 26,315 - ctpA OKGIIK_00110 0.89 -1.1 26,612 + -0.4 26,621 + -0.8 26,621 + -0.8 26,650 + +0.5 26,681 + -0.4 26,681 + +0.5 26,735 + -1.2 26,735 + -0.5 26,735 + -0.2 26,735 + +0.8 26,735 + -1.3 26,735 + -0.3 26,735 + +0.3 26,735 + -0.6 26,736 - +0.5 26,736 - -0.6 26,736 - -0.3 26,736 - -0.8 26,736 - -2.4 26,736 - -0.2 26,736 - +0.3 26,736 - -1.1 26,736 - +0.4 26,736 - -0.6 26,736 - +0.4 26,736 - +0.2 26,736 - +0.1 26,867 + OKGIIK_00115 0.14 -2.1 26,882 - OKGIIK_00115 0.14 -1.0 26,912 + OKGIIK_00115 0.16 -0.5 26,912 + OKGIIK_00115 0.16 -0.7 26,912 + OKGIIK_00115 0.16 +1.0 26,912 + OKGIIK_00115 0.16 -0.3 26,912 + OKGIIK_00115 0.16 +0.4 26,913 - OKGIIK_00115 0.16 +0.0 26,913 - OKGIIK_00115 0.16 -1.1 26,913 - OKGIIK_00115 0.16 -0.7 26,936 + OKGIIK_00115 0.17 +0.2 26,936 + OKGIIK_00115 0.17 -0.1 26,936 + OKGIIK_00115 0.17 -0.5 26,936 + OKGIIK_00115 0.17 +0.0 26,936 + OKGIIK_00115 0.17 +0.2 26,936 + OKGIIK_00115 0.17 -2.4 26,937 - OKGIIK_00115 0.17 +1.5 26,937 - OKGIIK_00115 0.17 -0.5 26,937 - OKGIIK_00115 0.17 +1.5 26,937 - OKGIIK_00115 0.17 -0.3 26,937 - OKGIIK_00115 0.17 -0.1 26,937 - OKGIIK_00115 0.17 -1.1 27,005 + OKGIIK_00115 0.21 -0.1 27,005 + OKGIIK_00115 0.21 -1.1 27,005 + OKGIIK_00115 0.21 -0.1 27,005 + OKGIIK_00115 0.21 -0.3 27,005 + OKGIIK_00115 0.21 +1.5 27,005 + OKGIIK_00115 0.21 +0.1 27,005 + OKGIIK_00115 0.21 +2.1 27,005 + OKGIIK_00115 0.21 +0.7 27,005 + OKGIIK_00115 0.21 +0.4 27,005 + OKGIIK_00115 0.21 -0.4 27,005 + OKGIIK_00115 0.21 -0.5 27,005 + OKGIIK_00115 0.21 +2.2 27,005 + OKGIIK_00115 0.21 -0.1 27,005 + OKGIIK_00115 0.21 -1.1 27,005 + OKGIIK_00115 0.21 -0.3 27,005 + OKGIIK_00115 0.21 -1.6 27,005 + OKGIIK_00115 0.21 +2.9 27,005 + OKGIIK_00115 0.21 -0.2 27,005 + OKGIIK_00115 0.21 +1.1 27,005 + OKGIIK_00115 0.21 -1.9 27,005 + OKGIIK_00115 0.21 +0.2 27,005 + OKGIIK_00115 0.21 +1.9 27,005 + OKGIIK_00115 0.21 +0.1 27,005 + OKGIIK_00115 0.21 -1.4 27,005 + OKGIIK_00115 0.21 +0.2 27,006 - OKGIIK_00115 0.21 +1.2 27,006 - OKGIIK_00115 0.21 -0.6 27,006 - OKGIIK_00115 0.21 -0.2 27,006 - OKGIIK_00115 0.21 -1.0 27,006 - OKGIIK_00115 0.21 -0.5 27,006 - OKGIIK_00115 0.21 -1.3 27,006 - OKGIIK_00115 0.21 -0.8 27,006 - OKGIIK_00115 0.21 +0.6 27,006 - OKGIIK_00115 0.21 -1.3 27,006 - OKGIIK_00115 0.21 +1.5 27,006 - OKGIIK_00115 0.21 +0.2 27,006 - OKGIIK_00115 0.21 +0.7 27,006 - OKGIIK_00115 0.21 -1.6 27,006 - OKGIIK_00115 0.21 -0.6 27,006 - OKGIIK_00115 0.21 +0.0 27,006 - OKGIIK_00115 0.21 -1.3 27,006 - OKGIIK_00115 0.21 -0.2 27,006 - OKGIIK_00115 0.21 +0.5 27,006 - OKGIIK_00115 0.21 -1.8 27,006 - OKGIIK_00115 0.21 +0.4 27,006 - OKGIIK_00115 0.21 +0.9 27,006 - OKGIIK_00115 0.21 -2.3 27,006 - OKGIIK_00115 0.21 +2.0 27,006 - OKGIIK_00115 0.21 +1.2 27,167 + OKGIIK_00115 0.30 +0.5 27,167 + OKGIIK_00115 0.30 -0.9 27,167 + OKGIIK_00115 0.30 -1.3 27,167 + OKGIIK_00115 0.30 -1.3 27,167 + OKGIIK_00115 0.30 +0.1 27,167 + OKGIIK_00115 0.30 -1.9 27,167 + OKGIIK_00115 0.30 +0.9 27,167 + OKGIIK_00115 0.30 -0.8 27,168 - OKGIIK_00115 0.30 -0.3 27,168 - OKGIIK_00115 0.30 +0.3 27,168 - OKGIIK_00115 0.30 -0.2 27,168 - OKGIIK_00115 0.30 +0.8 27,168 - OKGIIK_00115 0.30 -0.3 27,168 - OKGIIK_00115 0.30 -3.5 27,168 - OKGIIK_00115 0.30 +0.3 27,410 + OKGIIK_00115 0.43 +0.5 27,410 + OKGIIK_00115 0.43 +0.5 27,411 - OKGIIK_00115 0.43 -0.5 27,411 - OKGIIK_00115 0.43 -1.5 27,411 - OKGIIK_00115 0.43 +0.7 27,424 + OKGIIK_00115 0.43 +0.4 27,424 + OKGIIK_00115 0.43 +0.3 27,483 + OKGIIK_00115 0.47 -0.5
Or see this region's nucleotide sequence