Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06988

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06986 and MPMX19_06987 are separated by 106 nucleotidesMPMX19_06987 and MPMX19_06988 are separated by 68 nucleotidesMPMX19_06988 and MPMX19_06989 are separated by 114 nucleotides MPMX19_06986: MPMX19_06986 - sugar efflux transporter, at 268,278 to 269,516 _06986 MPMX19_06987: MPMX19_06987 - hypothetical protein, at 269,623 to 270,075 _06987 MPMX19_06988: MPMX19_06988 - hypothetical protein, at 270,144 to 270,539 _06988 MPMX19_06989: MPMX19_06989 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 270,654 to 271,379 _06989 Position (kb) 270 271Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 269.185 kb on - strand, within MPMX19_06986at 269.185 kb on - strand, within MPMX19_06986at 269.185 kb on - strand, within MPMX19_06986at 269.185 kb on - strand, within MPMX19_06986at 269.185 kb on - strand, within MPMX19_06986at 269.185 kb on - strand, within MPMX19_06986at 269.277 kb on - strand, within MPMX19_06986at 269.315 kb on - strand, within MPMX19_06986at 269.315 kb on - strand, within MPMX19_06986at 269.407 kb on + strandat 269.457 kb on - strandat 269.466 kb on + strandat 269.466 kb on + strandat 269.466 kb on + strandat 269.467 kb on - strandat 269.467 kb on - strandat 269.565 kb on + strandat 269.565 kb on + strandat 269.566 kb on - strandat 269.767 kb on - strand, within MPMX19_06987at 269.767 kb on - strand, within MPMX19_06987at 269.855 kb on - strand, within MPMX19_06987at 269.855 kb on - strand, within MPMX19_06987at 269.863 kb on + strand, within MPMX19_06987at 269.863 kb on + strand, within MPMX19_06987at 269.863 kb on + strand, within MPMX19_06987at 269.863 kb on + strand, within MPMX19_06987at 269.863 kb on + strand, within MPMX19_06987at 269.863 kb on + strand, within MPMX19_06987at 269.864 kb on + strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.938 kb on + strand, within MPMX19_06987at 269.938 kb on + strand, within MPMX19_06987at 269.938 kb on + strand, within MPMX19_06987at 269.939 kb on - strand, within MPMX19_06987at 269.939 kb on - strand, within MPMX19_06987at 270.046 kb on - strandat 270.046 kb on - strandat 270.145 kb on + strandat 270.145 kb on + strandat 270.145 kb on + strandat 270.146 kb on - strandat 270.146 kb on - strandat 270.190 kb on + strand, within MPMX19_06988at 270.190 kb on + strand, within MPMX19_06988at 270.190 kb on + strand, within MPMX19_06988at 270.191 kb on - strand, within MPMX19_06988at 270.191 kb on - strand, within MPMX19_06988at 270.191 kb on - strand, within MPMX19_06988at 270.191 kb on - strand, within MPMX19_06988at 270.191 kb on - strand, within MPMX19_06988at 270.241 kb on + strand, within MPMX19_06988at 270.241 kb on + strand, within MPMX19_06988at 270.242 kb on - strand, within MPMX19_06988at 270.285 kb on - strand, within MPMX19_06988at 270.476 kb on + strand, within MPMX19_06988at 270.476 kb on + strand, within MPMX19_06988at 270.476 kb on + strand, within MPMX19_06988at 270.477 kb on - strand, within MPMX19_06988at 270.477 kb on - strand, within MPMX19_06988at 270.477 kb on - strand, within MPMX19_06988at 270.543 kb on + strandat 270.544 kb on - strandat 270.544 kb on - strandat 270.544 kb on - strandat 270.545 kb on + strandat 270.545 kb on + strandat 270.545 kb on + strandat 270.545 kb on + strandat 270.545 kb on + strandat 270.545 kb on + strandat 270.545 kb on + strandat 270.546 kb on - strandat 270.546 kb on - strandat 270.546 kb on - strandat 270.546 kb on - strandat 270.546 kb on - strandat 270.546 kb on - strandat 270.546 kb on - strandat 270.546 kb on - strandat 270.546 kb on - strandat 270.555 kb on + strandat 270.566 kb on + strandat 270.610 kb on - strandat 270.611 kb on + strandat 270.611 kb on + strandat 270.612 kb on - strandat 270.620 kb on + strandat 270.653 kb on + strandat 270.653 kb on + strandat 270.653 kb on + strandat 270.653 kb on + strandat 270.653 kb on + strandat 270.653 kb on + strandat 270.653 kb on + strandat 270.653 kb on + strandat 270.654 kb on - strandat 270.654 kb on - strandat 270.654 kb on - strandat 270.654 kb on - strandat 270.654 kb on - strandat 270.654 kb on - strandat 270.654 kb on - strandat 270.654 kb on - strandat 270.753 kb on + strand, within MPMX19_06989at 270.753 kb on + strand, within MPMX19_06989at 270.753 kb on + strand, within MPMX19_06989at 270.753 kb on + strand, within MPMX19_06989at 270.754 kb on - strand, within MPMX19_06989at 271.046 kb on - strand, within MPMX19_06989at 271.095 kb on + strand, within MPMX19_06989at 271.096 kb on - strand, within MPMX19_06989

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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269,185 - MPMX19_06986 0.73 -3.0
269,185 - MPMX19_06986 0.73 -0.7
269,185 - MPMX19_06986 0.73 -0.9
269,185 - MPMX19_06986 0.73 -0.7
269,185 - MPMX19_06986 0.73 -1.7
269,185 - MPMX19_06986 0.73 -0.4
269,277 - MPMX19_06986 0.81 -3.0
269,315 - MPMX19_06986 0.84 -1.7
269,315 - MPMX19_06986 0.84 -0.4
269,407 + -0.4
269,457 - -0.6
269,466 + +0.1
269,466 + -1.1
269,466 + +0.1
269,467 - -0.4
269,467 - -0.9
269,565 + -0.2
269,565 + -2.1
269,566 - -1.4
269,767 - MPMX19_06987 0.32 -0.6
269,767 - MPMX19_06987 0.32 +0.1
269,855 - MPMX19_06987 0.51 +0.9
269,855 - MPMX19_06987 0.51 -0.9
269,863 + MPMX19_06987 0.53 -0.7
269,863 + MPMX19_06987 0.53 +0.4
269,863 + MPMX19_06987 0.53 -1.5
269,863 + MPMX19_06987 0.53 +0.7
269,863 + MPMX19_06987 0.53 -0.9
269,863 + MPMX19_06987 0.53 -2.1
269,864 + MPMX19_06987 0.53 +0.6
269,864 - MPMX19_06987 0.53 +0.6
269,864 - MPMX19_06987 0.53 -1.7
269,864 - MPMX19_06987 0.53 +1.1
269,864 - MPMX19_06987 0.53 -0.2
269,864 - MPMX19_06987 0.53 -1.7
269,864 - MPMX19_06987 0.53 +1.0
269,864 - MPMX19_06987 0.53 -1.0
269,864 - MPMX19_06987 0.53 -0.3
269,864 - MPMX19_06987 0.53 -0.9
269,938 + MPMX19_06987 0.70 -0.0
269,938 + MPMX19_06987 0.70 +0.1
269,938 + MPMX19_06987 0.70 -0.6
269,939 - MPMX19_06987 0.70 +0.5
269,939 - MPMX19_06987 0.70 -0.8
270,046 - -0.8
270,046 - +1.7
270,145 + -1.3
270,145 + +0.4
270,145 + -0.0
270,146 - -1.3
270,146 - +1.0
270,190 + MPMX19_06988 0.12 -1.0
270,190 + MPMX19_06988 0.12 -0.7
270,190 + MPMX19_06988 0.12 -0.6
270,191 - MPMX19_06988 0.12 -0.3
270,191 - MPMX19_06988 0.12 -2.0
270,191 - MPMX19_06988 0.12 +0.7
270,191 - MPMX19_06988 0.12 -0.1
270,191 - MPMX19_06988 0.12 -0.9
270,241 + MPMX19_06988 0.24 +0.6
270,241 + MPMX19_06988 0.24 -0.8
270,242 - MPMX19_06988 0.25 +0.1
270,285 - MPMX19_06988 0.36 +0.1
270,476 + MPMX19_06988 0.84 +0.2
270,476 + MPMX19_06988 0.84 -1.6
270,476 + MPMX19_06988 0.84 -1.6
270,477 - MPMX19_06988 0.84 -1.7
270,477 - MPMX19_06988 0.84 -1.6
270,477 - MPMX19_06988 0.84 -0.6
270,543 + +0.7
270,544 - +0.7
270,544 - +0.7
270,544 - -1.3
270,545 + -0.3
270,545 + -0.9
270,545 + -0.4
270,545 + -0.7
270,545 + -0.3
270,545 + +0.4
270,545 + -0.3
270,546 - -2.2
270,546 - -0.0
270,546 - +0.6
270,546 - -0.5
270,546 - -0.9
270,546 - -0.2
270,546 - +0.1
270,546 - -0.9
270,546 - +0.3
270,555 + -0.0
270,566 + -0.8
270,610 - -0.3
270,611 + +0.5
270,611 + -0.9
270,612 - -0.0
270,620 + -0.3
270,653 + +0.1
270,653 + -0.8
270,653 + -0.7
270,653 + +1.5
270,653 + -0.4
270,653 + -0.9
270,653 + +0.4
270,653 + +0.6
270,654 - +0.4
270,654 - -0.6
270,654 - -0.3
270,654 - -0.7
270,654 - -1.1
270,654 - +0.4
270,654 - -0.2
270,654 - -2.0
270,753 + MPMX19_06989 0.14 +0.6
270,753 + MPMX19_06989 0.14 +0.1
270,753 + MPMX19_06989 0.14 -0.7
270,753 + MPMX19_06989 0.14 +2.3
270,754 - MPMX19_06989 0.14 +2.1
271,046 - MPMX19_06989 0.54 -1.1
271,095 + MPMX19_06989 0.61 -1.4
271,096 - MPMX19_06989 0.61 +0.2

Or see this region's nucleotide sequence