Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06986

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06984 and MPMX19_06985 overlap by 4 nucleotidesMPMX19_06985 and MPMX19_06986 are separated by 78 nucleotidesMPMX19_06986 and MPMX19_06987 are separated by 106 nucleotidesMPMX19_06987 and MPMX19_06988 are separated by 68 nucleotides MPMX19_06984: MPMX19_06984 - Mesaconyl-C(4)-CoA hydratase, at 266,419 to 267,294 _06984 MPMX19_06985: MPMX19_06985 - L-malyl-CoA/beta-methylmalyl-CoA lyase, at 267,291 to 268,199 _06985 MPMX19_06986: MPMX19_06986 - sugar efflux transporter, at 268,278 to 269,516 _06986 MPMX19_06987: MPMX19_06987 - hypothetical protein, at 269,623 to 270,075 _06987 MPMX19_06988: MPMX19_06988 - hypothetical protein, at 270,144 to 270,539 _06988 Position (kb) 268 269 270Strain fitness (log2 ratio) -3 -2 -1 0 1at 268.006 kb on + strand, within MPMX19_06985at 268.006 kb on + strand, within MPMX19_06985at 268.007 kb on - strand, within MPMX19_06985at 268.007 kb on - strand, within MPMX19_06985at 268.065 kb on - strand, within MPMX19_06985at 268.197 kb on + strandat 268.198 kb on - strandat 268.198 kb on - strandat 268.408 kb on + strand, within MPMX19_06986at 268.408 kb on + strand, within MPMX19_06986at 268.409 kb on - strand, within MPMX19_06986at 268.409 kb on - strand, within MPMX19_06986at 268.465 kb on + strand, within MPMX19_06986at 268.465 kb on + strand, within MPMX19_06986at 268.465 kb on + strand, within MPMX19_06986at 268.465 kb on + strand, within MPMX19_06986at 268.466 kb on - strand, within MPMX19_06986at 268.466 kb on - strand, within MPMX19_06986at 268.753 kb on + strand, within MPMX19_06986at 268.753 kb on + strand, within MPMX19_06986at 268.754 kb on - strand, within MPMX19_06986at 268.754 kb on - strand, within MPMX19_06986at 268.901 kb on - strand, within MPMX19_06986at 268.901 kb on - strand, within MPMX19_06986at 268.961 kb on + strand, within MPMX19_06986at 268.962 kb on - strand, within MPMX19_06986at 268.962 kb on - strand, within MPMX19_06986at 268.990 kb on + strand, within MPMX19_06986at 268.991 kb on - strand, within MPMX19_06986at 268.991 kb on - strand, within MPMX19_06986at 268.991 kb on - strand, within MPMX19_06986at 268.991 kb on - strand, within MPMX19_06986at 268.991 kb on - strand, within MPMX19_06986at 268.991 kb on - strand, within MPMX19_06986at 268.991 kb on - strand, within MPMX19_06986at 269.142 kb on + strand, within MPMX19_06986at 269.143 kb on - strand, within MPMX19_06986at 269.143 kb on - strand, within MPMX19_06986at 269.143 kb on - strand, within MPMX19_06986at 269.185 kb on - strand, within MPMX19_06986at 269.185 kb on - strand, within MPMX19_06986at 269.185 kb on - strand, within MPMX19_06986at 269.185 kb on - strand, within MPMX19_06986at 269.185 kb on - strand, within MPMX19_06986at 269.185 kb on - strand, within MPMX19_06986at 269.277 kb on - strand, within MPMX19_06986at 269.315 kb on - strand, within MPMX19_06986at 269.315 kb on - strand, within MPMX19_06986at 269.407 kb on + strandat 269.457 kb on - strandat 269.466 kb on + strandat 269.466 kb on + strandat 269.466 kb on + strandat 269.467 kb on - strandat 269.467 kb on - strandat 269.565 kb on + strandat 269.565 kb on + strandat 269.566 kb on - strandat 269.767 kb on - strand, within MPMX19_06987at 269.767 kb on - strand, within MPMX19_06987at 269.855 kb on - strand, within MPMX19_06987at 269.855 kb on - strand, within MPMX19_06987at 269.863 kb on + strand, within MPMX19_06987at 269.863 kb on + strand, within MPMX19_06987at 269.863 kb on + strand, within MPMX19_06987at 269.863 kb on + strand, within MPMX19_06987at 269.863 kb on + strand, within MPMX19_06987at 269.863 kb on + strand, within MPMX19_06987at 269.864 kb on + strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.864 kb on - strand, within MPMX19_06987at 269.938 kb on + strand, within MPMX19_06987at 269.938 kb on + strand, within MPMX19_06987at 269.938 kb on + strand, within MPMX19_06987at 269.939 kb on - strand, within MPMX19_06987at 269.939 kb on - strand, within MPMX19_06987at 270.046 kb on - strandat 270.046 kb on - strandat 270.145 kb on + strandat 270.145 kb on + strandat 270.145 kb on + strandat 270.146 kb on - strandat 270.146 kb on - strandat 270.190 kb on + strand, within MPMX19_06988at 270.190 kb on + strand, within MPMX19_06988at 270.190 kb on + strand, within MPMX19_06988at 270.191 kb on - strand, within MPMX19_06988at 270.191 kb on - strand, within MPMX19_06988at 270.191 kb on - strand, within MPMX19_06988at 270.191 kb on - strand, within MPMX19_06988at 270.191 kb on - strand, within MPMX19_06988at 270.241 kb on + strand, within MPMX19_06988at 270.241 kb on + strand, within MPMX19_06988at 270.242 kb on - strand, within MPMX19_06988at 270.285 kb on - strand, within MPMX19_06988at 270.476 kb on + strand, within MPMX19_06988at 270.476 kb on + strand, within MPMX19_06988at 270.476 kb on + strand, within MPMX19_06988at 270.477 kb on - strand, within MPMX19_06988at 270.477 kb on - strand, within MPMX19_06988at 270.477 kb on - strand, within MPMX19_06988

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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268,006 + MPMX19_06985 0.79 -1.0
268,006 + MPMX19_06985 0.79 -1.4
268,007 - MPMX19_06985 0.79 -0.6
268,007 - MPMX19_06985 0.79 +0.6
268,065 - MPMX19_06985 0.85 -1.4
268,197 + -0.1
268,198 - -0.6
268,198 - -0.3
268,408 + MPMX19_06986 0.10 -0.9
268,408 + MPMX19_06986 0.10 -0.4
268,409 - MPMX19_06986 0.11 -0.6
268,409 - MPMX19_06986 0.11 -0.7
268,465 + MPMX19_06986 0.15 -1.9
268,465 + MPMX19_06986 0.15 +0.5
268,465 + MPMX19_06986 0.15 +0.6
268,465 + MPMX19_06986 0.15 -0.3
268,466 - MPMX19_06986 0.15 +0.0
268,466 - MPMX19_06986 0.15 -1.4
268,753 + MPMX19_06986 0.38 -0.1
268,753 + MPMX19_06986 0.38 +1.1
268,754 - MPMX19_06986 0.38 -0.7
268,754 - MPMX19_06986 0.38 -0.6
268,901 - MPMX19_06986 0.50 -0.4
268,901 - MPMX19_06986 0.50 -0.6
268,961 + MPMX19_06986 0.55 +0.7
268,962 - MPMX19_06986 0.55 +0.1
268,962 - MPMX19_06986 0.55 -1.2
268,990 + MPMX19_06986 0.57 -1.7
268,991 - MPMX19_06986 0.58 -0.9
268,991 - MPMX19_06986 0.58 -0.8
268,991 - MPMX19_06986 0.58 -0.9
268,991 - MPMX19_06986 0.58 -1.3
268,991 - MPMX19_06986 0.58 -0.2
268,991 - MPMX19_06986 0.58 -0.4
268,991 - MPMX19_06986 0.58 -0.6
269,142 + MPMX19_06986 0.70 -1.0
269,143 - MPMX19_06986 0.70 +0.4
269,143 - MPMX19_06986 0.70 +0.5
269,143 - MPMX19_06986 0.70 -0.3
269,185 - MPMX19_06986 0.73 -3.0
269,185 - MPMX19_06986 0.73 -0.7
269,185 - MPMX19_06986 0.73 -0.9
269,185 - MPMX19_06986 0.73 -0.7
269,185 - MPMX19_06986 0.73 -1.7
269,185 - MPMX19_06986 0.73 -0.4
269,277 - MPMX19_06986 0.81 -3.0
269,315 - MPMX19_06986 0.84 -1.7
269,315 - MPMX19_06986 0.84 -0.4
269,407 + -0.4
269,457 - -0.6
269,466 + +0.1
269,466 + -1.1
269,466 + +0.1
269,467 - -0.4
269,467 - -0.9
269,565 + -0.2
269,565 + -2.1
269,566 - -1.4
269,767 - MPMX19_06987 0.32 -0.6
269,767 - MPMX19_06987 0.32 +0.1
269,855 - MPMX19_06987 0.51 +0.9
269,855 - MPMX19_06987 0.51 -0.9
269,863 + MPMX19_06987 0.53 -0.7
269,863 + MPMX19_06987 0.53 +0.4
269,863 + MPMX19_06987 0.53 -1.5
269,863 + MPMX19_06987 0.53 +0.7
269,863 + MPMX19_06987 0.53 -0.9
269,863 + MPMX19_06987 0.53 -2.1
269,864 + MPMX19_06987 0.53 +0.6
269,864 - MPMX19_06987 0.53 +0.6
269,864 - MPMX19_06987 0.53 -1.7
269,864 - MPMX19_06987 0.53 +1.1
269,864 - MPMX19_06987 0.53 -0.2
269,864 - MPMX19_06987 0.53 -1.7
269,864 - MPMX19_06987 0.53 +1.0
269,864 - MPMX19_06987 0.53 -1.0
269,864 - MPMX19_06987 0.53 -0.3
269,864 - MPMX19_06987 0.53 -0.9
269,938 + MPMX19_06987 0.70 -0.0
269,938 + MPMX19_06987 0.70 +0.1
269,938 + MPMX19_06987 0.70 -0.6
269,939 - MPMX19_06987 0.70 +0.5
269,939 - MPMX19_06987 0.70 -0.8
270,046 - -0.8
270,046 - +1.7
270,145 + -1.3
270,145 + +0.4
270,145 + -0.0
270,146 - -1.3
270,146 - +1.0
270,190 + MPMX19_06988 0.12 -1.0
270,190 + MPMX19_06988 0.12 -0.7
270,190 + MPMX19_06988 0.12 -0.6
270,191 - MPMX19_06988 0.12 -0.3
270,191 - MPMX19_06988 0.12 -2.0
270,191 - MPMX19_06988 0.12 +0.7
270,191 - MPMX19_06988 0.12 -0.1
270,191 - MPMX19_06988 0.12 -0.9
270,241 + MPMX19_06988 0.24 +0.6
270,241 + MPMX19_06988 0.24 -0.8
270,242 - MPMX19_06988 0.25 +0.1
270,285 - MPMX19_06988 0.36 +0.1
270,476 + MPMX19_06988 0.84 +0.2
270,476 + MPMX19_06988 0.84 -1.6
270,476 + MPMX19_06988 0.84 -1.6
270,477 - MPMX19_06988 0.84 -1.7
270,477 - MPMX19_06988 0.84 -1.6
270,477 - MPMX19_06988 0.84 -0.6

Or see this region's nucleotide sequence