Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06983 and MPMX19_06984 overlap by 4 nucleotides MPMX19_06984 and MPMX19_06985 overlap by 4 nucleotides MPMX19_06985 and MPMX19_06986 are separated by 78 nucleotides
MPMX19_06983: MPMX19_06983 - putative FAD-linked oxidoreductase, at 264,908 to 266,422
_06983
MPMX19_06984: MPMX19_06984 - Mesaconyl-C(4)-CoA hydratase, at 266,419 to 267,294
_06984
MPMX19_06985: MPMX19_06985 - L-malyl-CoA/beta-methylmalyl-CoA lyase, at 267,291 to 268,199
_06985
MPMX19_06986: MPMX19_06986 - sugar efflux transporter, at 268,278 to 269,516
_06986
Position (kb) 267
268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 266.425 kb on + strand at 266.822 kb on + strand, within MPMX19_06984 at 266.822 kb on + strand, within MPMX19_06984 at 266.822 kb on + strand, within MPMX19_06984 at 266.823 kb on - strand, within MPMX19_06984 at 266.823 kb on - strand, within MPMX19_06984 at 266.998 kb on + strand, within MPMX19_06984 at 266.999 kb on - strand, within MPMX19_06984 at 266.999 kb on - strand, within MPMX19_06984 at 267.031 kb on + strand, within MPMX19_06984 at 268.006 kb on + strand, within MPMX19_06985 at 268.006 kb on + strand, within MPMX19_06985 at 268.007 kb on - strand, within MPMX19_06985 at 268.007 kb on - strand, within MPMX19_06985 at 268.065 kb on - strand, within MPMX19_06985 at 268.197 kb on + strand at 268.198 kb on - strand at 268.198 kb on - strand at 268.408 kb on + strand, within MPMX19_06986 at 268.408 kb on + strand, within MPMX19_06986 at 268.409 kb on - strand, within MPMX19_06986 at 268.409 kb on - strand, within MPMX19_06986 at 268.465 kb on + strand, within MPMX19_06986 at 268.465 kb on + strand, within MPMX19_06986 at 268.465 kb on + strand, within MPMX19_06986 at 268.465 kb on + strand, within MPMX19_06986 at 268.466 kb on - strand, within MPMX19_06986 at 268.466 kb on - strand, within MPMX19_06986 at 268.753 kb on + strand, within MPMX19_06986 at 268.753 kb on + strand, within MPMX19_06986 at 268.754 kb on - strand, within MPMX19_06986 at 268.754 kb on - strand, within MPMX19_06986 at 268.901 kb on - strand, within MPMX19_06986 at 268.901 kb on - strand, within MPMX19_06986 at 268.961 kb on + strand, within MPMX19_06986 at 268.962 kb on - strand, within MPMX19_06986 at 268.962 kb on - strand, within MPMX19_06986 at 268.990 kb on + strand, within MPMX19_06986 at 268.991 kb on - strand, within MPMX19_06986 at 268.991 kb on - strand, within MPMX19_06986 at 268.991 kb on - strand, within MPMX19_06986 at 268.991 kb on - strand, within MPMX19_06986 at 268.991 kb on - strand, within MPMX19_06986 at 268.991 kb on - strand, within MPMX19_06986 at 268.991 kb on - strand, within MPMX19_06986 at 269.142 kb on + strand, within MPMX19_06986 at 269.143 kb on - strand, within MPMX19_06986 at 269.143 kb on - strand, within MPMX19_06986 at 269.143 kb on - strand, within MPMX19_06986 at 269.185 kb on - strand, within MPMX19_06986 at 269.185 kb on - strand, within MPMX19_06986 at 269.185 kb on - strand, within MPMX19_06986 at 269.185 kb on - strand, within MPMX19_06986 at 269.185 kb on - strand, within MPMX19_06986 at 269.185 kb on - strand, within MPMX19_06986
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 266,425 + +0.0 266,822 + MPMX19_06984 0.46 -1.5 266,822 + MPMX19_06984 0.46 -0.5 266,822 + MPMX19_06984 0.46 -1.7 266,823 - MPMX19_06984 0.46 -0.1 266,823 - MPMX19_06984 0.46 -2.0 266,998 + MPMX19_06984 0.66 -0.6 266,999 - MPMX19_06984 0.66 -0.9 266,999 - MPMX19_06984 0.66 -0.1 267,031 + MPMX19_06984 0.70 +0.7 268,006 + MPMX19_06985 0.79 -1.0 268,006 + MPMX19_06985 0.79 -1.4 268,007 - MPMX19_06985 0.79 -0.6 268,007 - MPMX19_06985 0.79 +0.6 268,065 - MPMX19_06985 0.85 -1.4 268,197 + -0.1 268,198 - -0.6 268,198 - -0.3 268,408 + MPMX19_06986 0.10 -0.9 268,408 + MPMX19_06986 0.10 -0.4 268,409 - MPMX19_06986 0.11 -0.6 268,409 - MPMX19_06986 0.11 -0.7 268,465 + MPMX19_06986 0.15 -1.9 268,465 + MPMX19_06986 0.15 +0.5 268,465 + MPMX19_06986 0.15 +0.6 268,465 + MPMX19_06986 0.15 -0.3 268,466 - MPMX19_06986 0.15 +0.0 268,466 - MPMX19_06986 0.15 -1.4 268,753 + MPMX19_06986 0.38 -0.1 268,753 + MPMX19_06986 0.38 +1.1 268,754 - MPMX19_06986 0.38 -0.7 268,754 - MPMX19_06986 0.38 -0.6 268,901 - MPMX19_06986 0.50 -0.4 268,901 - MPMX19_06986 0.50 -0.6 268,961 + MPMX19_06986 0.55 +0.7 268,962 - MPMX19_06986 0.55 +0.1 268,962 - MPMX19_06986 0.55 -1.2 268,990 + MPMX19_06986 0.57 -1.7 268,991 - MPMX19_06986 0.58 -0.9 268,991 - MPMX19_06986 0.58 -0.8 268,991 - MPMX19_06986 0.58 -0.9 268,991 - MPMX19_06986 0.58 -1.3 268,991 - MPMX19_06986 0.58 -0.2 268,991 - MPMX19_06986 0.58 -0.4 268,991 - MPMX19_06986 0.58 -0.6 269,142 + MPMX19_06986 0.70 -1.0 269,143 - MPMX19_06986 0.70 +0.4 269,143 - MPMX19_06986 0.70 +0.5 269,143 - MPMX19_06986 0.70 -0.3 269,185 - MPMX19_06986 0.73 -3.0 269,185 - MPMX19_06986 0.73 -0.7 269,185 - MPMX19_06986 0.73 -0.9 269,185 - MPMX19_06986 0.73 -0.7 269,185 - MPMX19_06986 0.73 -1.7 269,185 - MPMX19_06986 0.73 -0.4
Or see this region's nucleotide sequence