Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06973

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06972 and MPMX19_06973 are separated by 39 nucleotidesMPMX19_06973 and MPMX19_06974 are separated by 197 nucleotides MPMX19_06972: MPMX19_06972 - hypothetical protein, at 248,960 to 250,144 _06972 MPMX19_06973: MPMX19_06973 - 2-methylfumaryl-CoA isomerase, at 250,184 to 251,389 _06973 MPMX19_06974: MPMX19_06974 - 4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2, at 251,587 to 252,339 _06974 Position (kb) 250 251 252Strain fitness (log2 ratio) -3 -2 -1 0 1at 249.287 kb on + strand, within MPMX19_06972at 249.287 kb on + strand, within MPMX19_06972at 249.341 kb on - strand, within MPMX19_06972at 249.346 kb on + strand, within MPMX19_06972at 249.346 kb on + strand, within MPMX19_06972at 249.346 kb on + strand, within MPMX19_06972at 249.346 kb on + strand, within MPMX19_06972at 249.346 kb on + strand, within MPMX19_06972at 249.347 kb on - strand, within MPMX19_06972at 249.347 kb on - strand, within MPMX19_06972at 249.347 kb on - strand, within MPMX19_06972at 249.347 kb on - strand, within MPMX19_06972at 249.545 kb on + strand, within MPMX19_06972at 249.545 kb on + strand, within MPMX19_06972at 249.546 kb on - strand, within MPMX19_06972at 249.546 kb on - strand, within MPMX19_06972at 249.546 kb on - strand, within MPMX19_06972at 249.546 kb on - strand, within MPMX19_06972at 249.546 kb on - strand, within MPMX19_06972at 249.546 kb on - strand, within MPMX19_06972at 249.779 kb on - strand, within MPMX19_06972at 250.653 kb on + strand, within MPMX19_06973at 250.707 kb on + strand, within MPMX19_06973at 250.707 kb on + strand, within MPMX19_06973at 250.716 kb on + strand, within MPMX19_06973at 250.716 kb on + strand, within MPMX19_06973at 250.716 kb on + strand, within MPMX19_06973at 250.717 kb on - strand, within MPMX19_06973at 250.887 kb on + strand, within MPMX19_06973at 250.888 kb on - strand, within MPMX19_06973at 250.888 kb on - strand, within MPMX19_06973at 250.986 kb on + strand, within MPMX19_06973at 250.986 kb on + strand, within MPMX19_06973at 250.986 kb on + strand, within MPMX19_06973at 250.986 kb on + strand, within MPMX19_06973at 250.986 kb on + strand, within MPMX19_06973at 250.987 kb on - strand, within MPMX19_06973at 250.987 kb on - strand, within MPMX19_06973at 250.987 kb on - strand, within MPMX19_06973at 250.987 kb on - strand, within MPMX19_06973at 251.217 kb on + strand, within MPMX19_06973at 251.217 kb on + strand, within MPMX19_06973at 251.218 kb on - strand, within MPMX19_06973at 251.257 kb on - strand, within MPMX19_06973at 251.490 kb on + strandat 251.508 kb on + strandat 251.561 kb on + strandat 251.561 kb on + strandat 251.562 kb on - strandat 251.657 kb on + strandat 251.658 kb on - strandat 251.658 kb on - strandat 251.879 kb on + strand, within MPMX19_06974at 251.880 kb on - strand, within MPMX19_06974at 251.981 kb on + strand, within MPMX19_06974at 251.982 kb on - strand, within MPMX19_06974at 251.982 kb on - strand, within MPMX19_06974at 251.982 kb on - strand, within MPMX19_06974at 251.987 kb on + strand, within MPMX19_06974at 251.987 kb on + strand, within MPMX19_06974at 251.988 kb on - strand, within MPMX19_06974at 251.988 kb on - strand, within MPMX19_06974at 251.988 kb on - strand, within MPMX19_06974at 251.988 kb on - strand, within MPMX19_06974at 251.988 kb on - strand, within MPMX19_06974at 252.384 kb on + strandat 252.385 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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249,287 + MPMX19_06972 0.28 -1.2
249,287 + MPMX19_06972 0.28 -0.6
249,341 - MPMX19_06972 0.32 -1.3
249,346 + MPMX19_06972 0.33 -0.6
249,346 + MPMX19_06972 0.33 -0.7
249,346 + MPMX19_06972 0.33 -1.3
249,346 + MPMX19_06972 0.33 -0.5
249,346 + MPMX19_06972 0.33 -0.6
249,347 - MPMX19_06972 0.33 -0.4
249,347 - MPMX19_06972 0.33 -0.3
249,347 - MPMX19_06972 0.33 -1.4
249,347 - MPMX19_06972 0.33 +0.4
249,545 + MPMX19_06972 0.49 -0.4
249,545 + MPMX19_06972 0.49 -0.7
249,546 - MPMX19_06972 0.49 -0.8
249,546 - MPMX19_06972 0.49 -0.0
249,546 - MPMX19_06972 0.49 -2.7
249,546 - MPMX19_06972 0.49 -0.6
249,546 - MPMX19_06972 0.49 -0.2
249,546 - MPMX19_06972 0.49 +0.6
249,779 - MPMX19_06972 0.69 -1.4
250,653 + MPMX19_06973 0.39 +0.6
250,707 + MPMX19_06973 0.43 -0.3
250,707 + MPMX19_06973 0.43 -0.3
250,716 + MPMX19_06973 0.44 -0.0
250,716 + MPMX19_06973 0.44 -0.0
250,716 + MPMX19_06973 0.44 -0.4
250,717 - MPMX19_06973 0.44 +0.3
250,887 + MPMX19_06973 0.58 +0.4
250,888 - MPMX19_06973 0.58 -0.4
250,888 - MPMX19_06973 0.58 +0.7
250,986 + MPMX19_06973 0.67 -0.9
250,986 + MPMX19_06973 0.67 -0.9
250,986 + MPMX19_06973 0.67 +0.3
250,986 + MPMX19_06973 0.67 -0.1
250,986 + MPMX19_06973 0.67 +0.3
250,987 - MPMX19_06973 0.67 -0.3
250,987 - MPMX19_06973 0.67 +0.0
250,987 - MPMX19_06973 0.67 -1.4
250,987 - MPMX19_06973 0.67 +1.3
251,217 + MPMX19_06973 0.86 -0.7
251,217 + MPMX19_06973 0.86 +1.2
251,218 - MPMX19_06973 0.86 +0.4
251,257 - MPMX19_06973 0.89 +0.7
251,490 + +1.0
251,508 + -0.6
251,561 + +0.3
251,561 + -0.9
251,562 - +1.4
251,657 + -3.6
251,658 - -2.3
251,658 - +0.9
251,879 + MPMX19_06974 0.39 -0.5
251,880 - MPMX19_06974 0.39 +0.1
251,981 + MPMX19_06974 0.52 -0.5
251,982 - MPMX19_06974 0.52 +0.8
251,982 - MPMX19_06974 0.52 -0.6
251,982 - MPMX19_06974 0.52 +1.0
251,987 + MPMX19_06974 0.53 -1.2
251,987 + MPMX19_06974 0.53 -0.4
251,988 - MPMX19_06974 0.53 -1.7
251,988 - MPMX19_06974 0.53 -1.7
251,988 - MPMX19_06974 0.53 +0.1
251,988 - MPMX19_06974 0.53 +0.2
251,988 - MPMX19_06974 0.53 -1.4
252,384 + -0.3
252,385 - -0.1

Or see this region's nucleotide sequence