Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06928 and MPMX19_06929 are separated by 308 nucleotides MPMX19_06929 and MPMX19_06930 are separated by 316 nucleotides MPMX19_06930 and MPMX19_06931 are separated by 14 nucleotides MPMX19_06931 and MPMX19_06932 are separated by 548 nucleotides
MPMX19_06928: MPMX19_06928 - hypothetical protein, at 202,748 to 203,020
_06928
MPMX19_06929: MPMX19_06929 - hypothetical protein, at 203,329 to 203,646
_06929
MPMX19_06930: MPMX19_06930 - Sensor kinase CckA, at 203,963 to 204,331
_06930
MPMX19_06931: MPMX19_06931 - hypothetical protein, at 204,346 to 204,669
_06931
MPMX19_06932: MPMX19_06932 - hypothetical protein, at 205,218 to 205,895
_06932
Position (kb) 203
204
205 Strain fitness (log2 ratio) -2
-1
0
1
2 at 203.221 kb on + strand at 203.221 kb on + strand at 203.378 kb on + strand, within MPMX19_06929 at 203.435 kb on + strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.775 kb on + strand at 203.776 kb on - strand at 203.810 kb on + strand at 203.811 kb on - strand at 203.826 kb on + strand at 203.843 kb on - strand at 203.862 kb on + strand at 203.863 kb on - strand at 203.863 kb on - strand at 204.030 kb on + strand, within MPMX19_06930 at 204.030 kb on + strand, within MPMX19_06930 at 204.031 kb on - strand, within MPMX19_06930 at 204.031 kb on - strand, within MPMX19_06930 at 204.405 kb on - strand, within MPMX19_06931 at 204.847 kb on + strand at 204.847 kb on + strand at 204.848 kb on - strand at 204.971 kb on - strand at 205.319 kb on - strand, within MPMX19_06932
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 203,221 + +0.1 203,221 + -1.3 203,378 + MPMX19_06929 0.15 -1.8 203,435 + MPMX19_06929 0.33 +2.1 203,436 - MPMX19_06929 0.34 -0.4 203,436 - MPMX19_06929 0.34 +0.7 203,436 - MPMX19_06929 0.34 +0.6 203,436 - MPMX19_06929 0.34 -1.0 203,436 - MPMX19_06929 0.34 +0.1 203,775 + -2.3 203,776 - -0.4 203,810 + -2.3 203,811 - -2.7 203,826 + +0.7 203,843 - +1.5 203,862 + -0.7 203,863 - -0.1 203,863 - -0.7 204,030 + MPMX19_06930 0.18 -0.7 204,030 + MPMX19_06930 0.18 +0.7 204,031 - MPMX19_06930 0.18 -1.0 204,031 - MPMX19_06930 0.18 -0.4 204,405 - MPMX19_06931 0.18 -1.0 204,847 + +0.1 204,847 + +0.2 204,848 - +0.7 204,971 - -2.3 205,319 - MPMX19_06932 0.15 -0.4
Or see this region's nucleotide sequence