Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06927

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06925 and MPMX19_06926 are separated by 180 nucleotidesMPMX19_06926 and MPMX19_06927 are separated by 26 nucleotidesMPMX19_06927 and MPMX19_06928 are separated by 42 nucleotidesMPMX19_06928 and MPMX19_06929 are separated by 308 nucleotides MPMX19_06925: MPMX19_06925 - Putative HMP/thiamine import ATP-binding protein YkoD, at 200,190 to 201,533 _06925 MPMX19_06926: MPMX19_06926 - hypothetical protein, at 201,714 to 202,046 _06926 MPMX19_06927: MPMX19_06927 - FMN-dependent NADH-azoreductase 1, at 202,073 to 202,705 _06927 MPMX19_06928: MPMX19_06928 - hypothetical protein, at 202,748 to 203,020 _06928 MPMX19_06929: MPMX19_06929 - hypothetical protein, at 203,329 to 203,646 _06929 Position (kb) 202 203Strain fitness (log2 ratio) -2 -1 0 1 2at 201.513 kb on + strandat 201.513 kb on + strandat 201.514 kb on - strandat 201.514 kb on - strandat 201.514 kb on - strandat 201.514 kb on - strandat 201.575 kb on + strandat 201.575 kb on + strandat 201.575 kb on + strandat 201.575 kb on + strandat 201.577 kb on + strandat 201.578 kb on - strandat 201.578 kb on - strandat 201.585 kb on - strandat 201.589 kb on + strandat 201.589 kb on + strandat 201.592 kb on - strandat 201.592 kb on - strandat 201.899 kb on + strand, within MPMX19_06926at 201.899 kb on + strand, within MPMX19_06926at 201.900 kb on - strand, within MPMX19_06926at 201.900 kb on - strand, within MPMX19_06926at 201.958 kb on + strand, within MPMX19_06926at 201.958 kb on + strand, within MPMX19_06926at 201.958 kb on + strand, within MPMX19_06926at 201.959 kb on - strand, within MPMX19_06926at 201.959 kb on - strand, within MPMX19_06926at 201.959 kb on - strand, within MPMX19_06926at 201.959 kb on - strand, within MPMX19_06926at 201.959 kb on - strand, within MPMX19_06926at 202.021 kb on + strandat 202.021 kb on + strandat 202.021 kb on + strandat 202.022 kb on - strandat 202.022 kb on - strandat 202.075 kb on - strandat 202.075 kb on - strandat 202.075 kb on - strandat 202.218 kb on + strand, within MPMX19_06927at 202.230 kb on + strand, within MPMX19_06927at 202.230 kb on + strand, within MPMX19_06927at 202.230 kb on + strand, within MPMX19_06927at 202.231 kb on - strand, within MPMX19_06927at 202.231 kb on - strand, within MPMX19_06927at 202.231 kb on - strand, within MPMX19_06927at 202.272 kb on + strand, within MPMX19_06927at 202.272 kb on + strand, within MPMX19_06927at 202.273 kb on - strand, within MPMX19_06927at 202.273 kb on - strand, within MPMX19_06927at 202.344 kb on + strand, within MPMX19_06927at 202.344 kb on + strand, within MPMX19_06927at 202.344 kb on + strand, within MPMX19_06927at 202.344 kb on + strand, within MPMX19_06927at 202.345 kb on - strand, within MPMX19_06927at 202.345 kb on - strand, within MPMX19_06927at 202.404 kb on - strand, within MPMX19_06927at 202.416 kb on + strand, within MPMX19_06927at 202.416 kb on + strand, within MPMX19_06927at 202.416 kb on + strand, within MPMX19_06927at 202.416 kb on + strand, within MPMX19_06927at 202.416 kb on + strand, within MPMX19_06927at 202.417 kb on - strand, within MPMX19_06927at 202.417 kb on - strand, within MPMX19_06927at 202.417 kb on - strand, within MPMX19_06927at 202.855 kb on + strand, within MPMX19_06928at 202.856 kb on - strand, within MPMX19_06928at 202.918 kb on - strand, within MPMX19_06928at 202.918 kb on - strand, within MPMX19_06928at 202.918 kb on - strand, within MPMX19_06928at 203.221 kb on + strandat 203.221 kb on + strandat 203.378 kb on + strand, within MPMX19_06929at 203.435 kb on + strand, within MPMX19_06929at 203.436 kb on - strand, within MPMX19_06929at 203.436 kb on - strand, within MPMX19_06929at 203.436 kb on - strand, within MPMX19_06929at 203.436 kb on - strand, within MPMX19_06929at 203.436 kb on - strand, within MPMX19_06929

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
201,513 + -0.4
201,513 + -1.6
201,514 - -0.5
201,514 - -0.0
201,514 - +0.4
201,514 - +0.6
201,575 + -0.8
201,575 + -0.1
201,575 + -0.6
201,575 + +1.0
201,577 + -0.1
201,578 - -0.6
201,578 - -0.8
201,585 - -0.1
201,589 + -0.6
201,589 + -0.4
201,592 - -1.9
201,592 - -0.9
201,899 + MPMX19_06926 0.56 -0.9
201,899 + MPMX19_06926 0.56 +0.1
201,900 - MPMX19_06926 0.56 -1.1
201,900 - MPMX19_06926 0.56 -0.7
201,958 + MPMX19_06926 0.73 +0.7
201,958 + MPMX19_06926 0.73 +0.1
201,958 + MPMX19_06926 0.73 -0.3
201,959 - MPMX19_06926 0.74 -1.0
201,959 - MPMX19_06926 0.74 -1.6
201,959 - MPMX19_06926 0.74 +0.8
201,959 - MPMX19_06926 0.74 -0.9
201,959 - MPMX19_06926 0.74 -1.0
202,021 + -0.5
202,021 + -0.4
202,021 + -0.9
202,022 - -1.1
202,022 - +1.6
202,075 - -0.3
202,075 - +1.3
202,075 - -0.3
202,218 + MPMX19_06927 0.23 -0.1
202,230 + MPMX19_06927 0.25 +0.2
202,230 + MPMX19_06927 0.25 -1.4
202,230 + MPMX19_06927 0.25 -0.3
202,231 - MPMX19_06927 0.25 -0.1
202,231 - MPMX19_06927 0.25 +0.1
202,231 - MPMX19_06927 0.25 -0.1
202,272 + MPMX19_06927 0.31 -1.3
202,272 + MPMX19_06927 0.31 -1.3
202,273 - MPMX19_06927 0.32 +0.4
202,273 - MPMX19_06927 0.32 -0.1
202,344 + MPMX19_06927 0.43 +0.7
202,344 + MPMX19_06927 0.43 +0.1
202,344 + MPMX19_06927 0.43 +0.0
202,344 + MPMX19_06927 0.43 -0.1
202,345 - MPMX19_06927 0.43 +0.1
202,345 - MPMX19_06927 0.43 -0.9
202,404 - MPMX19_06927 0.52 -1.3
202,416 + MPMX19_06927 0.54 -0.2
202,416 + MPMX19_06927 0.54 -1.4
202,416 + MPMX19_06927 0.54 +0.4
202,416 + MPMX19_06927 0.54 -1.3
202,416 + MPMX19_06927 0.54 -1.7
202,417 - MPMX19_06927 0.54 +0.5
202,417 - MPMX19_06927 0.54 -1.1
202,417 - MPMX19_06927 0.54 -0.9
202,855 + MPMX19_06928 0.39 -1.1
202,856 - MPMX19_06928 0.40 -0.4
202,918 - MPMX19_06928 0.62 -1.3
202,918 - MPMX19_06928 0.62 -1.3
202,918 - MPMX19_06928 0.62 -0.6
203,221 + +0.1
203,221 + -1.3
203,378 + MPMX19_06929 0.15 -1.8
203,435 + MPMX19_06929 0.33 +2.1
203,436 - MPMX19_06929 0.34 -0.4
203,436 - MPMX19_06929 0.34 +0.7
203,436 - MPMX19_06929 0.34 +0.6
203,436 - MPMX19_06929 0.34 -1.0
203,436 - MPMX19_06929 0.34 +0.1

Or see this region's nucleotide sequence