Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06924 and MPMX19_06925 are separated by 278 nucleotides MPMX19_06925 and MPMX19_06926 are separated by 180 nucleotides MPMX19_06926 and MPMX19_06927 are separated by 26 nucleotides
MPMX19_06924: MPMX19_06924 - hypothetical protein, at 198,496 to 199,911
_06924
MPMX19_06925: MPMX19_06925 - Putative HMP/thiamine import ATP-binding protein YkoD, at 200,190 to 201,533
_06925
MPMX19_06926: MPMX19_06926 - hypothetical protein, at 201,714 to 202,046
_06926
MPMX19_06927: MPMX19_06927 - FMN-dependent NADH-azoreductase 1, at 202,073 to 202,705
_06927
Position (kb) 200
201
202 Strain fitness (log2 ratio) -2
-1
0
1 at 199.810 kb on + strand at 199.810 kb on + strand at 199.810 kb on + strand at 199.810 kb on + strand at 199.811 kb on - strand at 199.811 kb on - strand at 199.812 kb on + strand at 199.812 kb on + strand at 199.812 kb on + strand at 199.812 kb on + strand at 199.813 kb on - strand at 199.813 kb on - strand at 199.843 kb on - strand at 199.907 kb on + strand at 199.907 kb on + strand at 199.907 kb on + strand at 199.907 kb on + strand at 200.063 kb on - strand at 200.095 kb on + strand at 200.095 kb on + strand at 200.095 kb on + strand at 200.096 kb on - strand at 200.096 kb on - strand at 200.096 kb on - strand at 200.149 kb on + strand at 200.149 kb on + strand at 200.149 kb on + strand at 200.149 kb on + strand at 200.149 kb on + strand at 200.150 kb on - strand at 200.150 kb on - strand at 200.150 kb on - strand at 200.159 kb on + strand at 200.173 kb on + strand at 200.173 kb on + strand at 200.174 kb on - strand at 200.174 kb on - strand at 201.513 kb on + strand at 201.513 kb on + strand at 201.514 kb on - strand at 201.514 kb on - strand at 201.514 kb on - strand at 201.514 kb on - strand at 201.575 kb on + strand at 201.575 kb on + strand at 201.575 kb on + strand at 201.575 kb on + strand at 201.577 kb on + strand at 201.578 kb on - strand at 201.578 kb on - strand at 201.585 kb on - strand at 201.589 kb on + strand at 201.589 kb on + strand at 201.592 kb on - strand at 201.592 kb on - strand at 201.899 kb on + strand, within MPMX19_06926 at 201.899 kb on + strand, within MPMX19_06926 at 201.900 kb on - strand, within MPMX19_06926 at 201.900 kb on - strand, within MPMX19_06926 at 201.958 kb on + strand, within MPMX19_06926 at 201.958 kb on + strand, within MPMX19_06926 at 201.958 kb on + strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 202.021 kb on + strand at 202.021 kb on + strand at 202.021 kb on + strand at 202.022 kb on - strand at 202.022 kb on - strand at 202.075 kb on - strand at 202.075 kb on - strand at 202.075 kb on - strand at 202.218 kb on + strand, within MPMX19_06927 at 202.230 kb on + strand, within MPMX19_06927 at 202.230 kb on + strand, within MPMX19_06927 at 202.230 kb on + strand, within MPMX19_06927 at 202.231 kb on - strand, within MPMX19_06927 at 202.231 kb on - strand, within MPMX19_06927 at 202.231 kb on - strand, within MPMX19_06927 at 202.272 kb on + strand, within MPMX19_06927 at 202.272 kb on + strand, within MPMX19_06927 at 202.273 kb on - strand, within MPMX19_06927 at 202.273 kb on - strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.345 kb on - strand, within MPMX19_06927 at 202.345 kb on - strand, within MPMX19_06927 at 202.404 kb on - strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.417 kb on - strand, within MPMX19_06927 at 202.417 kb on - strand, within MPMX19_06927 at 202.417 kb on - strand, within MPMX19_06927
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 199,810 + -1.4 199,810 + -0.9 199,810 + +0.6 199,810 + +0.1 199,811 - -0.3 199,811 - -0.4 199,812 + -0.1 199,812 + -1.4 199,812 + -1.3 199,812 + +0.8 199,813 - +0.2 199,813 - -0.3 199,843 - -0.2 199,907 + -0.4 199,907 + -0.6 199,907 + +0.7 199,907 + +0.1 200,063 - -0.3 200,095 + -2.0 200,095 + -1.2 200,095 + +0.1 200,096 - +0.4 200,096 - +0.4 200,096 - +1.7 200,149 + -1.2 200,149 + -0.3 200,149 + +0.1 200,149 + -0.0 200,149 + -0.7 200,150 - -0.9 200,150 - -0.9 200,150 - -0.6 200,159 + +0.3 200,173 + +0.7 200,173 + -0.4 200,174 - -0.5 200,174 - -1.1 201,513 + -0.4 201,513 + -1.6 201,514 - -0.5 201,514 - -0.0 201,514 - +0.4 201,514 - +0.6 201,575 + -0.8 201,575 + -0.1 201,575 + -0.6 201,575 + +1.0 201,577 + -0.1 201,578 - -0.6 201,578 - -0.8 201,585 - -0.1 201,589 + -0.6 201,589 + -0.4 201,592 - -1.9 201,592 - -0.9 201,899 + MPMX19_06926 0.56 -0.9 201,899 + MPMX19_06926 0.56 +0.1 201,900 - MPMX19_06926 0.56 -1.1 201,900 - MPMX19_06926 0.56 -0.7 201,958 + MPMX19_06926 0.73 +0.7 201,958 + MPMX19_06926 0.73 +0.1 201,958 + MPMX19_06926 0.73 -0.3 201,959 - MPMX19_06926 0.74 -1.0 201,959 - MPMX19_06926 0.74 -1.6 201,959 - MPMX19_06926 0.74 +0.8 201,959 - MPMX19_06926 0.74 -0.9 201,959 - MPMX19_06926 0.74 -1.0 202,021 + -0.5 202,021 + -0.4 202,021 + -0.9 202,022 - -1.1 202,022 - +1.6 202,075 - -0.3 202,075 - +1.3 202,075 - -0.3 202,218 + MPMX19_06927 0.23 -0.1 202,230 + MPMX19_06927 0.25 +0.2 202,230 + MPMX19_06927 0.25 -1.4 202,230 + MPMX19_06927 0.25 -0.3 202,231 - MPMX19_06927 0.25 -0.1 202,231 - MPMX19_06927 0.25 +0.1 202,231 - MPMX19_06927 0.25 -0.1 202,272 + MPMX19_06927 0.31 -1.3 202,272 + MPMX19_06927 0.31 -1.3 202,273 - MPMX19_06927 0.32 +0.4 202,273 - MPMX19_06927 0.32 -0.1 202,344 + MPMX19_06927 0.43 +0.7 202,344 + MPMX19_06927 0.43 +0.1 202,344 + MPMX19_06927 0.43 +0.0 202,344 + MPMX19_06927 0.43 -0.1 202,345 - MPMX19_06927 0.43 +0.1 202,345 - MPMX19_06927 0.43 -0.9 202,404 - MPMX19_06927 0.52 -1.3 202,416 + MPMX19_06927 0.54 -0.2 202,416 + MPMX19_06927 0.54 -1.4 202,416 + MPMX19_06927 0.54 +0.4 202,416 + MPMX19_06927 0.54 -1.3 202,416 + MPMX19_06927 0.54 -1.7 202,417 - MPMX19_06927 0.54 +0.5 202,417 - MPMX19_06927 0.54 -1.1 202,417 - MPMX19_06927 0.54 -0.9
Or see this region's nucleotide sequence