Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06912

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06910 and MPMX19_06911 overlap by 4 nucleotidesMPMX19_06911 and MPMX19_06912 are separated by 1 nucleotidesMPMX19_06912 and MPMX19_06913 are separated by 103 nucleotides MPMX19_06910: MPMX19_06910 - hypothetical protein, at 185,838 to 186,872 _06910 MPMX19_06911: MPMX19_06911 - Lipopolysaccharide export system ATP-binding protein LptB, at 186,869 to 187,624 _06911 MPMX19_06912: MPMX19_06912 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 187,626 to 188,369 _06912 MPMX19_06913: MPMX19_06913 - D-galactarolactone cycloisomerase, at 188,473 to 189,573 _06913 Position (kb) 187 188 189Strain fitness (log2 ratio) -2 -1 0 1 2at 186.684 kb on + strand, within MPMX19_06910at 186.685 kb on - strand, within MPMX19_06910at 187.023 kb on - strand, within MPMX19_06911at 187.023 kb on - strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.295 kb on + strand, within MPMX19_06911at 187.296 kb on - strand, within MPMX19_06911at 187.296 kb on - strand, within MPMX19_06911at 187.498 kb on + strand, within MPMX19_06911at 187.498 kb on + strand, within MPMX19_06911at 187.499 kb on - strand, within MPMX19_06911at 187.610 kb on + strandat 187.610 kb on + strandat 187.610 kb on + strandat 187.610 kb on + strandat 187.610 kb on + strandat 187.610 kb on + strandat 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 188.010 kb on + strand, within MPMX19_06912at 188.010 kb on + strand, within MPMX19_06912at 188.010 kb on + strand, within MPMX19_06912at 188.010 kb on + strand, within MPMX19_06912at 188.010 kb on + strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.265 kb on + strand, within MPMX19_06912at 188.265 kb on + strand, within MPMX19_06912at 188.265 kb on + strand, within MPMX19_06912at 188.266 kb on - strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.272 kb on - strand, within MPMX19_06912at 188.272 kb on - strand, within MPMX19_06912at 188.272 kb on - strand, within MPMX19_06912at 188.349 kb on + strandat 188.350 kb on - strandat 188.350 kb on - strandat 188.572 kb on + strandat 188.572 kb on + strandat 188.572 kb on + strandat 188.572 kb on + strandat 188.573 kb on - strandat 188.573 kb on - strandat 188.573 kb on - strandat 188.573 kb on - strandat 188.632 kb on + strand, within MPMX19_06913at 188.632 kb on + strand, within MPMX19_06913at 188.632 kb on + strand, within MPMX19_06913at 188.632 kb on + strand, within MPMX19_06913at 188.633 kb on - strand, within MPMX19_06913at 188.776 kb on + strand, within MPMX19_06913at 188.777 kb on - strand, within MPMX19_06913at 188.777 kb on - strand, within MPMX19_06913at 188.777 kb on - strand, within MPMX19_06913at 188.777 kb on - strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.885 kb on - strand, within MPMX19_06913at 188.885 kb on - strand, within MPMX19_06913at 188.885 kb on - strand, within MPMX19_06913at 189.189 kb on + strand, within MPMX19_06913at 189.190 kb on - strand, within MPMX19_06913at 189.259 kb on + strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.361 kb on + strand, within MPMX19_06913at 189.362 kb on + strand, within MPMX19_06913

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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186,684 + MPMX19_06910 0.82 +0.1
186,685 - MPMX19_06910 0.82 +0.1
187,023 - MPMX19_06911 0.20 +0.1
187,023 - MPMX19_06911 0.20 +0.3
187,025 + MPMX19_06911 0.21 -1.2
187,025 + MPMX19_06911 0.21 -0.2
187,025 + MPMX19_06911 0.21 -1.3
187,025 + MPMX19_06911 0.21 +0.7
187,025 + MPMX19_06911 0.21 -0.4
187,025 + MPMX19_06911 0.21 +1.1
187,026 - MPMX19_06911 0.21 -2.0
187,026 - MPMX19_06911 0.21 +1.7
187,026 - MPMX19_06911 0.21 -0.3
187,026 - MPMX19_06911 0.21 -0.3
187,026 - MPMX19_06911 0.21 -0.7
187,026 - MPMX19_06911 0.21 +0.7
187,295 + MPMX19_06911 0.56 -0.2
187,296 - MPMX19_06911 0.56 +0.1
187,296 - MPMX19_06911 0.56 -0.5
187,498 + MPMX19_06911 0.83 -0.1
187,498 + MPMX19_06911 0.83 -1.1
187,499 - MPMX19_06911 0.83 -0.9
187,610 + -0.1
187,610 + -0.1
187,610 + +0.7
187,610 + -2.0
187,610 + +0.3
187,610 + +0.4
187,965 + MPMX19_06912 0.46 -0.2
187,965 + MPMX19_06912 0.46 +0.9
187,965 + MPMX19_06912 0.46 -0.2
187,965 + MPMX19_06912 0.46 +0.5
187,965 + MPMX19_06912 0.46 +0.1
187,965 + MPMX19_06912 0.46 +1.3
187,965 + MPMX19_06912 0.46 -1.4
187,965 + MPMX19_06912 0.46 -1.0
187,965 + MPMX19_06912 0.46 -0.6
187,965 + MPMX19_06912 0.46 -0.7
187,965 + MPMX19_06912 0.46 +0.1
187,966 - MPMX19_06912 0.46 +0.7
187,966 - MPMX19_06912 0.46 +0.3
187,966 - MPMX19_06912 0.46 -1.1
187,966 - MPMX19_06912 0.46 +0.5
187,966 - MPMX19_06912 0.46 -0.6
187,966 - MPMX19_06912 0.46 +0.4
187,966 - MPMX19_06912 0.46 -1.1
187,966 - MPMX19_06912 0.46 -0.8
188,010 + MPMX19_06912 0.52 -1.1
188,010 + MPMX19_06912 0.52 +0.6
188,010 + MPMX19_06912 0.52 -0.3
188,010 + MPMX19_06912 0.52 -0.0
188,010 + MPMX19_06912 0.52 -1.0
188,011 - MPMX19_06912 0.52 +0.4
188,011 - MPMX19_06912 0.52 +1.7
188,011 - MPMX19_06912 0.52 -0.6
188,011 - MPMX19_06912 0.52 -0.8
188,011 - MPMX19_06912 0.52 +0.7
188,011 - MPMX19_06912 0.52 +0.1
188,265 + MPMX19_06912 0.86 -1.7
188,265 + MPMX19_06912 0.86 +0.1
188,265 + MPMX19_06912 0.86 -2.2
188,266 - MPMX19_06912 0.86 +1.0
188,271 + MPMX19_06912 0.87 -0.3
188,271 + MPMX19_06912 0.87 -2.3
188,271 + MPMX19_06912 0.87 +0.9
188,271 + MPMX19_06912 0.87 +0.5
188,271 + MPMX19_06912 0.87 -0.7
188,271 + MPMX19_06912 0.87 -0.1
188,272 - MPMX19_06912 0.87 -0.0
188,272 - MPMX19_06912 0.87 +2.0
188,272 - MPMX19_06912 0.87 +1.6
188,349 + -0.4
188,350 - +0.1
188,350 - +0.1
188,572 + +1.6
188,572 + +1.9
188,572 + +0.7
188,572 + +0.6
188,573 - -1.2
188,573 - +0.6
188,573 - +0.7
188,573 - -2.2
188,632 + MPMX19_06913 0.14 +1.0
188,632 + MPMX19_06913 0.14 +0.1
188,632 + MPMX19_06913 0.14 +0.0
188,632 + MPMX19_06913 0.14 -1.6
188,633 - MPMX19_06913 0.15 -0.2
188,776 + MPMX19_06913 0.28 -1.6
188,777 - MPMX19_06913 0.28 -1.5
188,777 - MPMX19_06913 0.28 +0.1
188,777 - MPMX19_06913 0.28 -0.1
188,777 - MPMX19_06913 0.28 -0.4
188,884 + MPMX19_06913 0.37 -2.0
188,884 + MPMX19_06913 0.37 +0.5
188,884 + MPMX19_06913 0.37 +0.6
188,884 + MPMX19_06913 0.37 -0.9
188,884 + MPMX19_06913 0.37 +0.4
188,884 + MPMX19_06913 0.37 +0.5
188,885 - MPMX19_06913 0.37 -1.9
188,885 - MPMX19_06913 0.37 -0.6
188,885 - MPMX19_06913 0.37 +0.6
189,189 + MPMX19_06913 0.65 +0.3
189,190 - MPMX19_06913 0.65 -1.0
189,259 + MPMX19_06913 0.71 -2.4
189,260 - MPMX19_06913 0.71 -2.0
189,260 - MPMX19_06913 0.71 -0.6
189,260 - MPMX19_06913 0.71 -0.0
189,260 - MPMX19_06913 0.71 +2.2
189,260 - MPMX19_06913 0.71 -0.3
189,260 - MPMX19_06913 0.71 -0.5
189,260 - MPMX19_06913 0.71 +1.0
189,361 + MPMX19_06913 0.81 -0.3
189,362 + MPMX19_06913 0.81 -0.4

Or see this region's nucleotide sequence