Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06910

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06909 and MPMX19_06910 overlap by 4 nucleotidesMPMX19_06910 and MPMX19_06911 overlap by 4 nucleotidesMPMX19_06911 and MPMX19_06912 are separated by 1 nucleotides MPMX19_06909: MPMX19_06909 - High-affinity branched-chain amino acid transport system permease protein LivH, at 184,981 to 185,841 _06909 MPMX19_06910: MPMX19_06910 - hypothetical protein, at 185,838 to 186,872 _06910 MPMX19_06911: MPMX19_06911 - Lipopolysaccharide export system ATP-binding protein LptB, at 186,869 to 187,624 _06911 MPMX19_06912: MPMX19_06912 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 187,626 to 188,369 _06912 Position (kb) 185 186 187Strain fitness (log2 ratio) -2 -1 0 1at 185.023 kb on + strandat 185.024 kb on - strandat 185.044 kb on + strandat 185.044 kb on + strandat 185.045 kb on - strandat 185.045 kb on - strandat 185.045 kb on - strandat 185.045 kb on - strandat 185.045 kb on - strandat 185.125 kb on + strand, within MPMX19_06909at 185.126 kb on - strand, within MPMX19_06909at 185.126 kb on - strand, within MPMX19_06909at 185.126 kb on - strand, within MPMX19_06909at 185.386 kb on + strand, within MPMX19_06909at 185.441 kb on - strand, within MPMX19_06909at 185.441 kb on - strand, within MPMX19_06909at 185.455 kb on + strand, within MPMX19_06909at 185.455 kb on + strand, within MPMX19_06909at 185.455 kb on + strand, within MPMX19_06909at 185.455 kb on + strand, within MPMX19_06909at 185.455 kb on + strand, within MPMX19_06909at 185.455 kb on + strand, within MPMX19_06909at 185.456 kb on - strand, within MPMX19_06909at 185.456 kb on - strand, within MPMX19_06909at 185.456 kb on - strand, within MPMX19_06909at 185.456 kb on - strand, within MPMX19_06909at 185.456 kb on - strand, within MPMX19_06909at 185.636 kb on - strand, within MPMX19_06909at 185.636 kb on - strand, within MPMX19_06909at 185.731 kb on + strand, within MPMX19_06909at 185.731 kb on + strand, within MPMX19_06909at 185.731 kb on + strand, within MPMX19_06909at 185.732 kb on - strand, within MPMX19_06909at 185.732 kb on - strand, within MPMX19_06909at 185.732 kb on - strand, within MPMX19_06909at 185.838 kb on - strandat 185.925 kb on + strandat 185.925 kb on + strandat 185.926 kb on - strandat 185.926 kb on - strandat 185.958 kb on + strand, within MPMX19_06910at 185.958 kb on + strand, within MPMX19_06910at 185.959 kb on - strand, within MPMX19_06910at 185.959 kb on - strand, within MPMX19_06910at 185.997 kb on + strand, within MPMX19_06910at 185.998 kb on - strand, within MPMX19_06910at 186.048 kb on + strand, within MPMX19_06910at 186.048 kb on + strand, within MPMX19_06910at 186.048 kb on + strand, within MPMX19_06910at 186.048 kb on + strand, within MPMX19_06910at 186.048 kb on + strand, within MPMX19_06910at 186.175 kb on - strand, within MPMX19_06910at 186.175 kb on - strand, within MPMX19_06910at 186.175 kb on - strand, within MPMX19_06910at 186.175 kb on - strand, within MPMX19_06910at 186.175 kb on - strand, within MPMX19_06910at 186.309 kb on + strand, within MPMX19_06910at 186.310 kb on - strand, within MPMX19_06910at 186.310 kb on - strand, within MPMX19_06910at 186.310 kb on - strand, within MPMX19_06910at 186.310 kb on - strand, within MPMX19_06910at 186.310 kb on - strand, within MPMX19_06910at 186.522 kb on + strand, within MPMX19_06910at 186.522 kb on + strand, within MPMX19_06910at 186.522 kb on + strand, within MPMX19_06910at 186.522 kb on + strand, within MPMX19_06910at 186.522 kb on + strand, within MPMX19_06910at 186.523 kb on - strand, within MPMX19_06910at 186.523 kb on - strand, within MPMX19_06910at 186.523 kb on - strand, within MPMX19_06910at 186.523 kb on - strand, within MPMX19_06910at 186.523 kb on - strand, within MPMX19_06910at 186.523 kb on - strand, within MPMX19_06910at 186.523 kb on - strand, within MPMX19_06910at 186.684 kb on + strand, within MPMX19_06910at 186.685 kb on - strand, within MPMX19_06910at 187.023 kb on - strand, within MPMX19_06911at 187.023 kb on - strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.295 kb on + strand, within MPMX19_06911at 187.296 kb on - strand, within MPMX19_06911at 187.296 kb on - strand, within MPMX19_06911at 187.498 kb on + strand, within MPMX19_06911at 187.498 kb on + strand, within MPMX19_06911at 187.499 kb on - strand, within MPMX19_06911at 187.610 kb on + strandat 187.610 kb on + strandat 187.610 kb on + strandat 187.610 kb on + strandat 187.610 kb on + strandat 187.610 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
185,023 + -0.5
185,024 - -0.4
185,044 + -0.7
185,044 + -0.0
185,045 - -0.9
185,045 - +0.7
185,045 - -0.7
185,045 - +0.2
185,045 - -0.5
185,125 + MPMX19_06909 0.17 -0.1
185,126 - MPMX19_06909 0.17 -0.1
185,126 - MPMX19_06909 0.17 -0.7
185,126 - MPMX19_06909 0.17 -2.7
185,386 + MPMX19_06909 0.47 +1.0
185,441 - MPMX19_06909 0.53 -0.5
185,441 - MPMX19_06909 0.53 +0.2
185,455 + MPMX19_06909 0.55 -0.2
185,455 + MPMX19_06909 0.55 -2.2
185,455 + MPMX19_06909 0.55 -1.4
185,455 + MPMX19_06909 0.55 +0.6
185,455 + MPMX19_06909 0.55 -1.1
185,455 + MPMX19_06909 0.55 -0.9
185,456 - MPMX19_06909 0.55 +1.4
185,456 - MPMX19_06909 0.55 -0.3
185,456 - MPMX19_06909 0.55 -0.5
185,456 - MPMX19_06909 0.55 +1.3
185,456 - MPMX19_06909 0.55 +0.7
185,636 - MPMX19_06909 0.76 -0.6
185,636 - MPMX19_06909 0.76 -0.6
185,731 + MPMX19_06909 0.87 +0.0
185,731 + MPMX19_06909 0.87 +0.9
185,731 + MPMX19_06909 0.87 -0.5
185,732 - MPMX19_06909 0.87 -0.1
185,732 - MPMX19_06909 0.87 -0.7
185,732 - MPMX19_06909 0.87 -0.0
185,838 - -0.0
185,925 + -0.1
185,925 + -0.3
185,926 - -1.1
185,926 - -0.6
185,958 + MPMX19_06910 0.12 -1.3
185,958 + MPMX19_06910 0.12 -1.8
185,959 - MPMX19_06910 0.12 -0.2
185,959 - MPMX19_06910 0.12 -0.2
185,997 + MPMX19_06910 0.15 +1.0
185,998 - MPMX19_06910 0.15 -1.3
186,048 + MPMX19_06910 0.20 +0.4
186,048 + MPMX19_06910 0.20 +0.4
186,048 + MPMX19_06910 0.20 -0.3
186,048 + MPMX19_06910 0.20 -0.7
186,048 + MPMX19_06910 0.20 -1.6
186,175 - MPMX19_06910 0.33 -0.6
186,175 - MPMX19_06910 0.33 -0.6
186,175 - MPMX19_06910 0.33 +1.1
186,175 - MPMX19_06910 0.33 -1.4
186,175 - MPMX19_06910 0.33 -0.4
186,309 + MPMX19_06910 0.46 -0.1
186,310 - MPMX19_06910 0.46 +0.1
186,310 - MPMX19_06910 0.46 -1.4
186,310 - MPMX19_06910 0.46 +0.1
186,310 - MPMX19_06910 0.46 -1.2
186,310 - MPMX19_06910 0.46 +0.6
186,522 + MPMX19_06910 0.66 -0.4
186,522 + MPMX19_06910 0.66 -1.3
186,522 + MPMX19_06910 0.66 +1.1
186,522 + MPMX19_06910 0.66 +1.2
186,522 + MPMX19_06910 0.66 +1.3
186,523 - MPMX19_06910 0.66 -0.9
186,523 - MPMX19_06910 0.66 -1.9
186,523 - MPMX19_06910 0.66 -2.7
186,523 - MPMX19_06910 0.66 -1.2
186,523 - MPMX19_06910 0.66 -1.1
186,523 - MPMX19_06910 0.66 -0.9
186,523 - MPMX19_06910 0.66 +0.4
186,684 + MPMX19_06910 0.82 +0.1
186,685 - MPMX19_06910 0.82 +0.1
187,023 - MPMX19_06911 0.20 +0.1
187,023 - MPMX19_06911 0.20 +0.3
187,025 + MPMX19_06911 0.21 -1.2
187,025 + MPMX19_06911 0.21 -0.2
187,025 + MPMX19_06911 0.21 -1.3
187,025 + MPMX19_06911 0.21 +0.7
187,025 + MPMX19_06911 0.21 -0.4
187,025 + MPMX19_06911 0.21 +1.1
187,026 - MPMX19_06911 0.21 -2.0
187,026 - MPMX19_06911 0.21 +1.7
187,026 - MPMX19_06911 0.21 -0.3
187,026 - MPMX19_06911 0.21 -0.3
187,026 - MPMX19_06911 0.21 -0.7
187,026 - MPMX19_06911 0.21 +0.7
187,295 + MPMX19_06911 0.56 -0.2
187,296 - MPMX19_06911 0.56 +0.1
187,296 - MPMX19_06911 0.56 -0.5
187,498 + MPMX19_06911 0.83 -0.1
187,498 + MPMX19_06911 0.83 -1.1
187,499 - MPMX19_06911 0.83 -0.9
187,610 + -0.1
187,610 + -0.1
187,610 + +0.7
187,610 + -2.0
187,610 + +0.3
187,610 + +0.4

Or see this region's nucleotide sequence