Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06904

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06903 and MPMX19_06904 are separated by 239 nucleotidesMPMX19_06904 and MPMX19_06905 are separated by 40 nucleotidesMPMX19_06905 and MPMX19_06906 are separated by 101 nucleotides MPMX19_06903: MPMX19_06903 - Acetolactate synthase isozyme 2 large subunit, at 177,712 to 179,409 _06903 MPMX19_06904: MPMX19_06904 - putative tautomerase, at 179,649 to 179,840 _06904 MPMX19_06905: MPMX19_06905 - Transcriptional repressor IclR, at 179,881 to 180,717 _06905 MPMX19_06906: MPMX19_06906 - Acetyl-CoA:oxalate CoA-transferase, at 180,819 to 182,033 _06906 Position (kb) 179 180Strain fitness (log2 ratio) -2 -1 0 1 2at 178.655 kb on + strand, within MPMX19_06903at 178.655 kb on + strand, within MPMX19_06903at 178.656 kb on - strand, within MPMX19_06903at 178.866 kb on - strand, within MPMX19_06903at 178.905 kb on + strand, within MPMX19_06903at 178.905 kb on + strand, within MPMX19_06903at 178.905 kb on + strand, within MPMX19_06903at 178.905 kb on + strand, within MPMX19_06903at 178.906 kb on - strand, within MPMX19_06903at 178.906 kb on - strand, within MPMX19_06903at 178.906 kb on - strand, within MPMX19_06903at 178.906 kb on - strand, within MPMX19_06903at 178.906 kb on - strand, within MPMX19_06903at 178.906 kb on - strand, within MPMX19_06903at 178.958 kb on + strand, within MPMX19_06903at 178.958 kb on + strand, within MPMX19_06903at 178.958 kb on + strand, within MPMX19_06903at 178.959 kb on - strand, within MPMX19_06903at 178.959 kb on - strand, within MPMX19_06903at 179.033 kb on + strand, within MPMX19_06903at 179.033 kb on + strand, within MPMX19_06903at 179.033 kb on + strand, within MPMX19_06903at 179.033 kb on + strand, within MPMX19_06903at 179.033 kb on + strand, within MPMX19_06903at 179.309 kb on + strandat 179.310 kb on - strandat 179.310 kb on - strandat 179.310 kb on - strandat 179.779 kb on + strand, within MPMX19_06904at 179.779 kb on + strand, within MPMX19_06904at 179.779 kb on + strand, within MPMX19_06904at 179.779 kb on + strand, within MPMX19_06904at 179.780 kb on - strand, within MPMX19_06904at 179.780 kb on - strand, within MPMX19_06904at 179.780 kb on - strand, within MPMX19_06904at 179.927 kb on + strandat 180.104 kb on + strand, within MPMX19_06905at 180.105 kb on - strand, within MPMX19_06905at 180.105 kb on - strand, within MPMX19_06905at 180.173 kb on + strand, within MPMX19_06905at 180.173 kb on + strand, within MPMX19_06905at 180.174 kb on - strand, within MPMX19_06905at 180.174 kb on - strand, within MPMX19_06905at 180.174 kb on - strand, within MPMX19_06905at 180.174 kb on - strand, within MPMX19_06905at 180.182 kb on + strand, within MPMX19_06905at 180.182 kb on + strand, within MPMX19_06905at 180.182 kb on + strand, within MPMX19_06905at 180.182 kb on + strand, within MPMX19_06905at 180.182 kb on + strand, within MPMX19_06905at 180.183 kb on - strand, within MPMX19_06905at 180.183 kb on - strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.290 kb on + strand, within MPMX19_06905at 180.291 kb on - strand, within MPMX19_06905at 180.350 kb on + strand, within MPMX19_06905at 180.351 kb on - strand, within MPMX19_06905at 180.351 kb on - strand, within MPMX19_06905at 180.351 kb on - strand, within MPMX19_06905at 180.479 kb on + strand, within MPMX19_06905at 180.479 kb on + strand, within MPMX19_06905at 180.480 kb on - strand, within MPMX19_06905at 180.509 kb on + strand, within MPMX19_06905at 180.509 kb on + strand, within MPMX19_06905at 180.509 kb on + strand, within MPMX19_06905at 180.510 kb on - strand, within MPMX19_06905at 180.510 kb on - strand, within MPMX19_06905

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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178,655 + MPMX19_06903 0.56 -0.9
178,655 + MPMX19_06903 0.56 -0.6
178,656 - MPMX19_06903 0.56 -0.9
178,866 - MPMX19_06903 0.68 +1.0
178,905 + MPMX19_06903 0.70 -1.0
178,905 + MPMX19_06903 0.70 -0.9
178,905 + MPMX19_06903 0.70 +0.7
178,905 + MPMX19_06903 0.70 -0.7
178,906 - MPMX19_06903 0.70 +0.1
178,906 - MPMX19_06903 0.70 -2.0
178,906 - MPMX19_06903 0.70 +0.4
178,906 - MPMX19_06903 0.70 +0.6
178,906 - MPMX19_06903 0.70 +0.7
178,906 - MPMX19_06903 0.70 +1.1
178,958 + MPMX19_06903 0.73 +1.1
178,958 + MPMX19_06903 0.73 -0.0
178,958 + MPMX19_06903 0.73 -0.4
178,959 - MPMX19_06903 0.73 -0.5
178,959 - MPMX19_06903 0.73 -0.4
179,033 + MPMX19_06903 0.78 +1.4
179,033 + MPMX19_06903 0.78 -0.2
179,033 + MPMX19_06903 0.78 +0.4
179,033 + MPMX19_06903 0.78 -0.6
179,033 + MPMX19_06903 0.78 -1.3
179,309 + -0.6
179,310 - +0.1
179,310 - +0.5
179,310 - +0.3
179,779 + MPMX19_06904 0.68 -0.5
179,779 + MPMX19_06904 0.68 -1.1
179,779 + MPMX19_06904 0.68 -0.4
179,779 + MPMX19_06904 0.68 +1.1
179,780 - MPMX19_06904 0.68 -1.1
179,780 - MPMX19_06904 0.68 +0.5
179,780 - MPMX19_06904 0.68 -1.0
179,927 + +2.0
180,104 + MPMX19_06905 0.27 -0.4
180,105 - MPMX19_06905 0.27 -0.1
180,105 - MPMX19_06905 0.27 -1.4
180,173 + MPMX19_06905 0.35 +1.0
180,173 + MPMX19_06905 0.35 +1.5
180,174 - MPMX19_06905 0.35 -1.1
180,174 - MPMX19_06905 0.35 +0.1
180,174 - MPMX19_06905 0.35 +0.1
180,174 - MPMX19_06905 0.35 -0.3
180,182 + MPMX19_06905 0.36 +0.3
180,182 + MPMX19_06905 0.36 -0.9
180,182 + MPMX19_06905 0.36 +0.4
180,182 + MPMX19_06905 0.36 -1.1
180,182 + MPMX19_06905 0.36 +0.1
180,183 - MPMX19_06905 0.36 -0.1
180,183 - MPMX19_06905 0.36 -1.1
180,287 + MPMX19_06905 0.49 -2.2
180,287 + MPMX19_06905 0.49 -1.1
180,287 + MPMX19_06905 0.49 +0.7
180,287 + MPMX19_06905 0.49 -2.1
180,287 + MPMX19_06905 0.49 +1.3
180,287 + MPMX19_06905 0.49 -0.5
180,287 + MPMX19_06905 0.49 -1.2
180,287 + MPMX19_06905 0.49 -0.4
180,287 + MPMX19_06905 0.49 -0.1
180,287 + MPMX19_06905 0.49 -0.5
180,287 + MPMX19_06905 0.49 -0.0
180,287 + MPMX19_06905 0.49 +0.4
180,288 - MPMX19_06905 0.49 -0.4
180,288 - MPMX19_06905 0.49 +0.1
180,288 - MPMX19_06905 0.49 -0.1
180,288 - MPMX19_06905 0.49 -1.1
180,288 - MPMX19_06905 0.49 -1.1
180,288 - MPMX19_06905 0.49 -0.5
180,288 - MPMX19_06905 0.49 +0.1
180,288 - MPMX19_06905 0.49 -0.7
180,288 - MPMX19_06905 0.49 +1.0
180,288 - MPMX19_06905 0.49 -0.5
180,288 - MPMX19_06905 0.49 -0.8
180,288 - MPMX19_06905 0.49 -1.9
180,288 - MPMX19_06905 0.49 -0.1
180,288 - MPMX19_06905 0.49 -0.8
180,288 - MPMX19_06905 0.49 -1.2
180,288 - MPMX19_06905 0.49 -1.4
180,288 - MPMX19_06905 0.49 +0.3
180,290 + MPMX19_06905 0.49 -0.0
180,291 - MPMX19_06905 0.49 -0.2
180,350 + MPMX19_06905 0.56 +0.1
180,351 - MPMX19_06905 0.56 -1.1
180,351 - MPMX19_06905 0.56 +0.3
180,351 - MPMX19_06905 0.56 -1.6
180,479 + MPMX19_06905 0.71 +1.3
180,479 + MPMX19_06905 0.71 -0.1
180,480 - MPMX19_06905 0.72 +0.4
180,509 + MPMX19_06905 0.75 +0.1
180,509 + MPMX19_06905 0.75 -1.4
180,509 + MPMX19_06905 0.75 -0.9
180,510 - MPMX19_06905 0.75 +0.2
180,510 - MPMX19_06905 0.75 -0.6

Or see this region's nucleotide sequence