Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06901 and MPMX19_06902 overlap by 4 nucleotides MPMX19_06902 and MPMX19_06903 are separated by 87 nucleotides
MPMX19_06901: MPMX19_06901 - Alpha-ketoglutaric semialdehyde dehydrogenase, at 176,039 to 177,466
_06901
MPMX19_06902: MPMX19_06902 - hypothetical protein, at 177,463 to 177,624
_06902
MPMX19_06903: MPMX19_06903 - Acetolactate synthase isozyme 2 large subunit, at 177,712 to 179,409
_06903
Position (kb) 177
178 Strain fitness (log2 ratio) -2
-1
0
1 at 176.475 kb on + strand, within MPMX19_06901 at 176.475 kb on + strand, within MPMX19_06901 at 176.475 kb on + strand, within MPMX19_06901 at 176.475 kb on + strand, within MPMX19_06901 at 176.475 kb on + strand, within MPMX19_06901 at 176.475 kb on + strand, within MPMX19_06901 at 176.475 kb on + strand, within MPMX19_06901 at 176.475 kb on + strand, within MPMX19_06901 at 176.476 kb on - strand, within MPMX19_06901 at 176.476 kb on - strand, within MPMX19_06901 at 176.476 kb on - strand, within MPMX19_06901 at 176.476 kb on - strand, within MPMX19_06901 at 176.476 kb on - strand, within MPMX19_06901 at 176.476 kb on - strand, within MPMX19_06901 at 176.880 kb on - strand, within MPMX19_06901 at 177.041 kb on - strand, within MPMX19_06901 at 177.041 kb on - strand, within MPMX19_06901 at 177.275 kb on - strand, within MPMX19_06901 at 177.372 kb on + strand at 177.372 kb on + strand at 177.372 kb on + strand at 177.372 kb on + strand at 177.372 kb on + strand at 177.372 kb on + strand at 177.373 kb on - strand at 177.373 kb on - strand at 177.373 kb on - strand at 177.373 kb on - strand at 177.373 kb on - strand at 177.373 kb on - strand at 177.373 kb on - strand at 177.681 kb on + strand at 177.681 kb on + strand at 177.951 kb on - strand, within MPMX19_06903 at 178.026 kb on - strand, within MPMX19_06903 at 178.026 kb on - strand, within MPMX19_06903 at 178.142 kb on + strand, within MPMX19_06903 at 178.337 kb on + strand, within MPMX19_06903 at 178.337 kb on + strand, within MPMX19_06903 at 178.338 kb on - strand, within MPMX19_06903 at 178.467 kb on - strand, within MPMX19_06903 at 178.544 kb on + strand, within MPMX19_06903
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 176,475 + MPMX19_06901 0.31 +1.3 176,475 + MPMX19_06901 0.31 +0.3 176,475 + MPMX19_06901 0.31 -1.4 176,475 + MPMX19_06901 0.31 +0.6 176,475 + MPMX19_06901 0.31 -0.2 176,475 + MPMX19_06901 0.31 -0.3 176,475 + MPMX19_06901 0.31 -1.3 176,475 + MPMX19_06901 0.31 +0.1 176,476 - MPMX19_06901 0.31 +0.6 176,476 - MPMX19_06901 0.31 -0.9 176,476 - MPMX19_06901 0.31 -1.9 176,476 - MPMX19_06901 0.31 -0.7 176,476 - MPMX19_06901 0.31 +0.7 176,476 - MPMX19_06901 0.31 +0.4 176,880 - MPMX19_06901 0.59 +1.0 177,041 - MPMX19_06901 0.70 +0.9 177,041 - MPMX19_06901 0.70 -0.1 177,275 - MPMX19_06901 0.87 +1.0 177,372 + -0.0 177,372 + -2.0 177,372 + +0.5 177,372 + -1.6 177,372 + -0.3 177,372 + +0.3 177,373 - -1.2 177,373 - -1.4 177,373 - -1.2 177,373 - -0.6 177,373 - -0.4 177,373 - -0.2 177,373 - -0.8 177,681 + -0.5 177,681 + -1.9 177,951 - MPMX19_06903 0.14 -0.3 178,026 - MPMX19_06903 0.18 -0.6 178,026 - MPMX19_06903 0.18 +0.6 178,142 + MPMX19_06903 0.25 +1.0 178,337 + MPMX19_06903 0.37 +0.6 178,337 + MPMX19_06903 0.37 -1.6 178,338 - MPMX19_06903 0.37 -1.0 178,467 - MPMX19_06903 0.44 -1.1 178,544 + MPMX19_06903 0.49 +1.4
Or see this region's nucleotide sequence