Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06901

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06900 and MPMX19_06901 are separated by 174 nucleotidesMPMX19_06901 and MPMX19_06902 overlap by 4 nucleotidesMPMX19_06902 and MPMX19_06903 are separated by 87 nucleotides MPMX19_06900: MPMX19_06900 - Nucleoid occlusion protein, at 175,025 to 175,864 _06900 MPMX19_06901: MPMX19_06901 - Alpha-ketoglutaric semialdehyde dehydrogenase, at 176,039 to 177,466 _06901 MPMX19_06902: MPMX19_06902 - hypothetical protein, at 177,463 to 177,624 _06902 MPMX19_06903: MPMX19_06903 - Acetolactate synthase isozyme 2 large subunit, at 177,712 to 179,409 _06903 Position (kb) 176 177 178Strain fitness (log2 ratio) -2 -1 0 1 2at 175.238 kb on + strand, within MPMX19_06900at 175.238 kb on + strand, within MPMX19_06900at 175.408 kb on - strand, within MPMX19_06900at 175.960 kb on + strandat 176.008 kb on + strandat 176.008 kb on + strandat 176.008 kb on + strandat 176.009 kb on - strandat 176.009 kb on - strandat 176.009 kb on - strandat 176.009 kb on - strandat 176.009 kb on - strandat 176.009 kb on - strandat 176.009 kb on - strandat 176.055 kb on + strandat 176.055 kb on + strandat 176.055 kb on + strandat 176.056 kb on - strandat 176.056 kb on - strandat 176.056 kb on - strandat 176.056 kb on - strandat 176.056 kb on - strandat 176.056 kb on - strandat 176.076 kb on + strandat 176.076 kb on + strandat 176.076 kb on + strandat 176.077 kb on - strandat 176.115 kb on + strandat 176.115 kb on + strandat 176.115 kb on + strandat 176.115 kb on + strandat 176.115 kb on + strandat 176.115 kb on + strandat 176.116 kb on - strandat 176.116 kb on - strandat 176.116 kb on - strandat 176.116 kb on - strandat 176.299 kb on - strand, within MPMX19_06901at 176.397 kb on + strand, within MPMX19_06901at 176.397 kb on + strand, within MPMX19_06901at 176.397 kb on + strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.475 kb on + strand, within MPMX19_06901at 176.475 kb on + strand, within MPMX19_06901at 176.475 kb on + strand, within MPMX19_06901at 176.475 kb on + strand, within MPMX19_06901at 176.475 kb on + strand, within MPMX19_06901at 176.475 kb on + strand, within MPMX19_06901at 176.475 kb on + strand, within MPMX19_06901at 176.475 kb on + strand, within MPMX19_06901at 176.476 kb on - strand, within MPMX19_06901at 176.476 kb on - strand, within MPMX19_06901at 176.476 kb on - strand, within MPMX19_06901at 176.476 kb on - strand, within MPMX19_06901at 176.476 kb on - strand, within MPMX19_06901at 176.476 kb on - strand, within MPMX19_06901at 176.880 kb on - strand, within MPMX19_06901at 177.041 kb on - strand, within MPMX19_06901at 177.041 kb on - strand, within MPMX19_06901at 177.275 kb on - strand, within MPMX19_06901at 177.372 kb on + strandat 177.372 kb on + strandat 177.372 kb on + strandat 177.372 kb on + strandat 177.372 kb on + strandat 177.372 kb on + strandat 177.373 kb on - strandat 177.373 kb on - strandat 177.373 kb on - strandat 177.373 kb on - strandat 177.373 kb on - strandat 177.373 kb on - strandat 177.373 kb on - strandat 177.681 kb on + strandat 177.681 kb on + strandat 177.951 kb on - strand, within MPMX19_06903at 178.026 kb on - strand, within MPMX19_06903at 178.026 kb on - strand, within MPMX19_06903at 178.142 kb on + strand, within MPMX19_06903at 178.337 kb on + strand, within MPMX19_06903at 178.337 kb on + strand, within MPMX19_06903at 178.338 kb on - strand, within MPMX19_06903

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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175,238 + MPMX19_06900 0.25 +1.1
175,238 + MPMX19_06900 0.25 -1.4
175,408 - MPMX19_06900 0.46 +0.3
175,960 + -1.6
176,008 + -1.3
176,008 + -0.2
176,008 + -1.6
176,009 - +0.0
176,009 - -0.4
176,009 - -1.4
176,009 - -1.3
176,009 - -1.6
176,009 - -1.1
176,009 - -2.2
176,055 + -0.4
176,055 + +0.1
176,055 + -1.7
176,056 - +0.1
176,056 - -1.6
176,056 - -0.1
176,056 - +0.7
176,056 - -0.1
176,056 - -0.7
176,076 + -0.0
176,076 + -0.2
176,076 + -0.9
176,077 - -0.3
176,115 + +0.3
176,115 + -1.9
176,115 + -1.4
176,115 + -1.5
176,115 + -1.3
176,115 + -0.0
176,116 - -2.0
176,116 - -1.7
176,116 - -1.6
176,116 - -0.0
176,299 - MPMX19_06901 0.18 -0.2
176,397 + MPMX19_06901 0.25 +0.7
176,397 + MPMX19_06901 0.25 -0.9
176,397 + MPMX19_06901 0.25 +0.4
176,398 - MPMX19_06901 0.25 -0.4
176,398 - MPMX19_06901 0.25 -0.2
176,398 - MPMX19_06901 0.25 +0.2
176,398 - MPMX19_06901 0.25 +0.5
176,398 - MPMX19_06901 0.25 -1.9
176,398 - MPMX19_06901 0.25 +0.3
176,398 - MPMX19_06901 0.25 +1.3
176,398 - MPMX19_06901 0.25 +1.9
176,398 - MPMX19_06901 0.25 +0.7
176,398 - MPMX19_06901 0.25 -0.7
176,475 + MPMX19_06901 0.31 +1.3
176,475 + MPMX19_06901 0.31 +0.3
176,475 + MPMX19_06901 0.31 -1.4
176,475 + MPMX19_06901 0.31 +0.6
176,475 + MPMX19_06901 0.31 -0.2
176,475 + MPMX19_06901 0.31 -0.3
176,475 + MPMX19_06901 0.31 -1.3
176,475 + MPMX19_06901 0.31 +0.1
176,476 - MPMX19_06901 0.31 +0.6
176,476 - MPMX19_06901 0.31 -0.9
176,476 - MPMX19_06901 0.31 -1.9
176,476 - MPMX19_06901 0.31 -0.7
176,476 - MPMX19_06901 0.31 +0.7
176,476 - MPMX19_06901 0.31 +0.4
176,880 - MPMX19_06901 0.59 +1.0
177,041 - MPMX19_06901 0.70 +0.9
177,041 - MPMX19_06901 0.70 -0.1
177,275 - MPMX19_06901 0.87 +1.0
177,372 + -0.0
177,372 + -2.0
177,372 + +0.5
177,372 + -1.6
177,372 + -0.3
177,372 + +0.3
177,373 - -1.2
177,373 - -1.4
177,373 - -1.2
177,373 - -0.6
177,373 - -0.4
177,373 - -0.2
177,373 - -0.8
177,681 + -0.5
177,681 + -1.9
177,951 - MPMX19_06903 0.14 -0.3
178,026 - MPMX19_06903 0.18 -0.6
178,026 - MPMX19_06903 0.18 +0.6
178,142 + MPMX19_06903 0.25 +1.0
178,337 + MPMX19_06903 0.37 +0.6
178,337 + MPMX19_06903 0.37 -1.6
178,338 - MPMX19_06903 0.37 -1.0

Or see this region's nucleotide sequence