Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06900

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06899 and MPMX19_06900 are separated by 51 nucleotidesMPMX19_06900 and MPMX19_06901 are separated by 174 nucleotides MPMX19_06899: MPMX19_06899 - hypothetical protein, at 173,882 to 174,973 _06899 MPMX19_06900: MPMX19_06900 - Nucleoid occlusion protein, at 175,025 to 175,864 _06900 MPMX19_06901: MPMX19_06901 - Alpha-ketoglutaric semialdehyde dehydrogenase, at 176,039 to 177,466 _06901 Position (kb) 175 176Strain fitness (log2 ratio) -2 -1 0 1 2at 174.299 kb on + strand, within MPMX19_06899at 174.299 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.684 kb on - strand, within MPMX19_06899at 174.684 kb on - strand, within MPMX19_06899at 175.238 kb on + strand, within MPMX19_06900at 175.238 kb on + strand, within MPMX19_06900at 175.408 kb on - strand, within MPMX19_06900at 175.960 kb on + strandat 176.008 kb on + strandat 176.008 kb on + strandat 176.008 kb on + strandat 176.009 kb on - strandat 176.009 kb on - strandat 176.009 kb on - strandat 176.009 kb on - strandat 176.009 kb on - strandat 176.009 kb on - strandat 176.009 kb on - strandat 176.055 kb on + strandat 176.055 kb on + strandat 176.055 kb on + strandat 176.056 kb on - strandat 176.056 kb on - strandat 176.056 kb on - strandat 176.056 kb on - strandat 176.056 kb on - strandat 176.056 kb on - strandat 176.076 kb on + strandat 176.076 kb on + strandat 176.076 kb on + strandat 176.077 kb on - strandat 176.115 kb on + strandat 176.115 kb on + strandat 176.115 kb on + strandat 176.115 kb on + strandat 176.115 kb on + strandat 176.115 kb on + strandat 176.116 kb on - strandat 176.116 kb on - strandat 176.116 kb on - strandat 176.116 kb on - strandat 176.299 kb on - strand, within MPMX19_06901at 176.397 kb on + strand, within MPMX19_06901at 176.397 kb on + strand, within MPMX19_06901at 176.397 kb on + strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.398 kb on - strand, within MPMX19_06901at 176.475 kb on + strand, within MPMX19_06901at 176.475 kb on + strand, within MPMX19_06901at 176.475 kb on + strand, within MPMX19_06901at 176.475 kb on + strand, within MPMX19_06901at 176.475 kb on + strand, within MPMX19_06901at 176.475 kb on + strand, within MPMX19_06901at 176.475 kb on + strand, within MPMX19_06901at 176.475 kb on + strand, within MPMX19_06901at 176.476 kb on - strand, within MPMX19_06901at 176.476 kb on - strand, within MPMX19_06901at 176.476 kb on - strand, within MPMX19_06901at 176.476 kb on - strand, within MPMX19_06901at 176.476 kb on - strand, within MPMX19_06901at 176.476 kb on - strand, within MPMX19_06901

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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174,299 + MPMX19_06899 0.38 +0.1
174,299 + MPMX19_06899 0.38 -0.4
174,608 + MPMX19_06899 0.66 -0.6
174,608 + MPMX19_06899 0.66 +0.3
174,608 + MPMX19_06899 0.66 +0.9
174,608 + MPMX19_06899 0.66 -0.1
174,608 + MPMX19_06899 0.66 -0.0
174,608 + MPMX19_06899 0.66 -1.4
174,608 + MPMX19_06899 0.66 -0.4
174,608 + MPMX19_06899 0.66 -0.1
174,608 + MPMX19_06899 0.66 -0.8
174,608 + MPMX19_06899 0.66 -0.1
174,608 + MPMX19_06899 0.66 -1.6
174,608 + MPMX19_06899 0.66 -0.9
174,608 + MPMX19_06899 0.66 -0.2
174,608 + MPMX19_06899 0.66 -0.1
174,608 + MPMX19_06899 0.66 +2.3
174,608 + MPMX19_06899 0.66 -1.0
174,608 + MPMX19_06899 0.66 -0.4
174,608 + MPMX19_06899 0.66 -0.4
174,608 + MPMX19_06899 0.66 -1.4
174,609 - MPMX19_06899 0.67 -1.4
174,609 - MPMX19_06899 0.67 -0.3
174,609 - MPMX19_06899 0.67 +0.3
174,609 - MPMX19_06899 0.67 +0.4
174,609 - MPMX19_06899 0.67 -1.7
174,609 - MPMX19_06899 0.67 +0.6
174,609 - MPMX19_06899 0.67 +0.7
174,609 - MPMX19_06899 0.67 -0.5
174,609 - MPMX19_06899 0.67 +0.1
174,609 - MPMX19_06899 0.67 -2.4
174,609 - MPMX19_06899 0.67 -0.7
174,609 - MPMX19_06899 0.67 -1.6
174,609 - MPMX19_06899 0.67 -0.9
174,609 - MPMX19_06899 0.67 +1.0
174,609 - MPMX19_06899 0.67 -1.2
174,684 - MPMX19_06899 0.73 -0.4
174,684 - MPMX19_06899 0.73 -0.0
175,238 + MPMX19_06900 0.25 +1.1
175,238 + MPMX19_06900 0.25 -1.4
175,408 - MPMX19_06900 0.46 +0.3
175,960 + -1.6
176,008 + -1.3
176,008 + -0.2
176,008 + -1.6
176,009 - +0.0
176,009 - -0.4
176,009 - -1.4
176,009 - -1.3
176,009 - -1.6
176,009 - -1.1
176,009 - -2.2
176,055 + -0.4
176,055 + +0.1
176,055 + -1.7
176,056 - +0.1
176,056 - -1.6
176,056 - -0.1
176,056 - +0.7
176,056 - -0.1
176,056 - -0.7
176,076 + -0.0
176,076 + -0.2
176,076 + -0.9
176,077 - -0.3
176,115 + +0.3
176,115 + -1.9
176,115 + -1.4
176,115 + -1.5
176,115 + -1.3
176,115 + -0.0
176,116 - -2.0
176,116 - -1.7
176,116 - -1.6
176,116 - -0.0
176,299 - MPMX19_06901 0.18 -0.2
176,397 + MPMX19_06901 0.25 +0.7
176,397 + MPMX19_06901 0.25 -0.9
176,397 + MPMX19_06901 0.25 +0.4
176,398 - MPMX19_06901 0.25 -0.4
176,398 - MPMX19_06901 0.25 -0.2
176,398 - MPMX19_06901 0.25 +0.2
176,398 - MPMX19_06901 0.25 +0.5
176,398 - MPMX19_06901 0.25 -1.9
176,398 - MPMX19_06901 0.25 +0.3
176,398 - MPMX19_06901 0.25 +1.3
176,398 - MPMX19_06901 0.25 +1.9
176,398 - MPMX19_06901 0.25 +0.7
176,398 - MPMX19_06901 0.25 -0.7
176,475 + MPMX19_06901 0.31 +1.3
176,475 + MPMX19_06901 0.31 +0.3
176,475 + MPMX19_06901 0.31 -1.4
176,475 + MPMX19_06901 0.31 +0.6
176,475 + MPMX19_06901 0.31 -0.2
176,475 + MPMX19_06901 0.31 -0.3
176,475 + MPMX19_06901 0.31 -1.3
176,475 + MPMX19_06901 0.31 +0.1
176,476 - MPMX19_06901 0.31 +0.6
176,476 - MPMX19_06901 0.31 -0.9
176,476 - MPMX19_06901 0.31 -1.9
176,476 - MPMX19_06901 0.31 -0.7
176,476 - MPMX19_06901 0.31 +0.7
176,476 - MPMX19_06901 0.31 +0.4

Or see this region's nucleotide sequence