Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06899

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06898 and MPMX19_06899 overlap by 4 nucleotidesMPMX19_06899 and MPMX19_06900 are separated by 51 nucleotides MPMX19_06898: MPMX19_06898 - FAD-dependent urate hydroxylase, at 172,428 to 173,885 _06898 MPMX19_06899: MPMX19_06899 - hypothetical protein, at 173,882 to 174,973 _06899 MPMX19_06900: MPMX19_06900 - Nucleoid occlusion protein, at 175,025 to 175,864 _06900 Position (kb) 173 174 175Strain fitness (log2 ratio) -2 -1 0 1 2at 172.940 kb on - strand, within MPMX19_06898at 173.196 kb on + strand, within MPMX19_06898at 173.196 kb on + strand, within MPMX19_06898at 173.196 kb on + strand, within MPMX19_06898at 173.196 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.799 kb on + strandat 173.799 kb on + strandat 173.799 kb on + strandat 173.799 kb on + strandat 173.799 kb on + strandat 173.799 kb on + strandat 173.799 kb on + strandat 174.299 kb on + strand, within MPMX19_06899at 174.299 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.684 kb on - strand, within MPMX19_06899at 174.684 kb on - strand, within MPMX19_06899at 175.238 kb on + strand, within MPMX19_06900at 175.238 kb on + strand, within MPMX19_06900at 175.408 kb on - strand, within MPMX19_06900at 175.960 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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172,940 - MPMX19_06898 0.35 +0.4
173,196 + MPMX19_06898 0.53 -1.2
173,196 + MPMX19_06898 0.53 -0.3
173,196 + MPMX19_06898 0.53 +0.0
173,196 + MPMX19_06898 0.53 -1.1
173,316 + MPMX19_06898 0.61 +0.1
173,316 + MPMX19_06898 0.61 +0.4
173,316 + MPMX19_06898 0.61 -0.0
173,316 + MPMX19_06898 0.61 -2.2
173,316 + MPMX19_06898 0.61 -0.6
173,316 + MPMX19_06898 0.61 +2.1
173,316 + MPMX19_06898 0.61 +0.9
173,799 + -0.0
173,799 + -0.8
173,799 + -0.9
173,799 + -0.6
173,799 + -1.1
173,799 + -0.6
173,799 + -2.6
174,299 + MPMX19_06899 0.38 +0.1
174,299 + MPMX19_06899 0.38 -0.4
174,608 + MPMX19_06899 0.66 -0.6
174,608 + MPMX19_06899 0.66 +0.3
174,608 + MPMX19_06899 0.66 +0.9
174,608 + MPMX19_06899 0.66 -0.1
174,608 + MPMX19_06899 0.66 -0.0
174,608 + MPMX19_06899 0.66 -1.4
174,608 + MPMX19_06899 0.66 -0.4
174,608 + MPMX19_06899 0.66 -0.1
174,608 + MPMX19_06899 0.66 -0.8
174,608 + MPMX19_06899 0.66 -0.1
174,608 + MPMX19_06899 0.66 -1.6
174,608 + MPMX19_06899 0.66 -0.9
174,608 + MPMX19_06899 0.66 -0.2
174,608 + MPMX19_06899 0.66 -0.1
174,608 + MPMX19_06899 0.66 +2.3
174,608 + MPMX19_06899 0.66 -1.0
174,608 + MPMX19_06899 0.66 -0.4
174,608 + MPMX19_06899 0.66 -0.4
174,608 + MPMX19_06899 0.66 -1.4
174,609 - MPMX19_06899 0.67 -1.4
174,609 - MPMX19_06899 0.67 -0.3
174,609 - MPMX19_06899 0.67 +0.3
174,609 - MPMX19_06899 0.67 +0.4
174,609 - MPMX19_06899 0.67 -1.7
174,609 - MPMX19_06899 0.67 +0.6
174,609 - MPMX19_06899 0.67 +0.7
174,609 - MPMX19_06899 0.67 -0.5
174,609 - MPMX19_06899 0.67 +0.1
174,609 - MPMX19_06899 0.67 -2.4
174,609 - MPMX19_06899 0.67 -0.7
174,609 - MPMX19_06899 0.67 -1.6
174,609 - MPMX19_06899 0.67 -0.9
174,609 - MPMX19_06899 0.67 +1.0
174,609 - MPMX19_06899 0.67 -1.2
174,684 - MPMX19_06899 0.73 -0.4
174,684 - MPMX19_06899 0.73 -0.0
175,238 + MPMX19_06900 0.25 +1.1
175,238 + MPMX19_06900 0.25 -1.4
175,408 - MPMX19_06900 0.46 +0.3
175,960 + -1.6

Or see this region's nucleotide sequence