Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06887

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06885 and MPMX19_06886 overlap by 4 nucleotidesMPMX19_06886 and MPMX19_06887 are separated by 10 nucleotidesMPMX19_06887 and MPMX19_06888 are separated by 2 nucleotides MPMX19_06885: MPMX19_06885 - Nitrate import ATP-binding protein NrtD, at 157,119 to 157,931 _06885 MPMX19_06886: MPMX19_06886 - Putative aliphatic sulfonates transport permease protein SsuC, at 157,928 to 158,818 _06886 MPMX19_06887: MPMX19_06887 - Adenine deaminase, at 158,829 to 160,508 _06887 MPMX19_06888: MPMX19_06888 - hypothetical protein, at 160,511 to 161,962 _06888 Position (kb) 158 159 160 161Strain fitness (log2 ratio) -3 -2 -1 0 1at 157.840 kb on - strand, within MPMX19_06885at 157.840 kb on - strand, within MPMX19_06885at 158.374 kb on - strand, within MPMX19_06886at 158.374 kb on - strand, within MPMX19_06886at 158.504 kb on + strand, within MPMX19_06886at 158.504 kb on + strand, within MPMX19_06886at 158.504 kb on + strand, within MPMX19_06886at 158.508 kb on + strand, within MPMX19_06886at 158.508 kb on + strand, within MPMX19_06886at 158.508 kb on + strand, within MPMX19_06886at 158.508 kb on + strand, within MPMX19_06886at 158.508 kb on + strand, within MPMX19_06886at 158.508 kb on + strand, within MPMX19_06886at 158.508 kb on + strand, within MPMX19_06886at 158.508 kb on + strand, within MPMX19_06886at 158.509 kb on - strand, within MPMX19_06886at 158.673 kb on - strand, within MPMX19_06886at 158.673 kb on - strand, within MPMX19_06886at 158.673 kb on - strand, within MPMX19_06886at 158.673 kb on - strand, within MPMX19_06886at 158.673 kb on - strand, within MPMX19_06886at 159.047 kb on + strand, within MPMX19_06887at 159.047 kb on + strand, within MPMX19_06887at 159.047 kb on + strand, within MPMX19_06887at 159.048 kb on - strand, within MPMX19_06887at 159.280 kb on - strand, within MPMX19_06887at 159.280 kb on - strand, within MPMX19_06887at 159.280 kb on - strand, within MPMX19_06887at 159.544 kb on - strand, within MPMX19_06887at 160.019 kb on + strand, within MPMX19_06887at 160.020 kb on - strand, within MPMX19_06887at 160.661 kb on + strand, within MPMX19_06888at 160.661 kb on + strand, within MPMX19_06888at 160.662 kb on - strand, within MPMX19_06888at 160.662 kb on - strand, within MPMX19_06888at 160.856 kb on + strand, within MPMX19_06888

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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157,840 - MPMX19_06885 0.89 +0.1
157,840 - MPMX19_06885 0.89 +0.4
158,374 - MPMX19_06886 0.50 -0.7
158,374 - MPMX19_06886 0.50 +0.4
158,504 + MPMX19_06886 0.65 -0.4
158,504 + MPMX19_06886 0.65 -1.7
158,504 + MPMX19_06886 0.65 -0.6
158,508 + MPMX19_06886 0.65 +0.4
158,508 + MPMX19_06886 0.65 -0.4
158,508 + MPMX19_06886 0.65 +0.3
158,508 + MPMX19_06886 0.65 +0.2
158,508 + MPMX19_06886 0.65 -0.3
158,508 + MPMX19_06886 0.65 +0.7
158,508 + MPMX19_06886 0.65 -0.7
158,508 + MPMX19_06886 0.65 -0.9
158,509 - MPMX19_06886 0.65 -1.4
158,673 - MPMX19_06886 0.84 -0.4
158,673 - MPMX19_06886 0.84 +0.2
158,673 - MPMX19_06886 0.84 -1.1
158,673 - MPMX19_06886 0.84 +0.6
158,673 - MPMX19_06886 0.84 +0.3
159,047 + MPMX19_06887 0.13 +0.4
159,047 + MPMX19_06887 0.13 -1.2
159,047 + MPMX19_06887 0.13 -0.4
159,048 - MPMX19_06887 0.13 -0.9
159,280 - MPMX19_06887 0.27 +0.3
159,280 - MPMX19_06887 0.27 -0.3
159,280 - MPMX19_06887 0.27 -1.6
159,544 - MPMX19_06887 0.43 -1.1
160,019 + MPMX19_06887 0.71 -1.4
160,020 - MPMX19_06887 0.71 -0.9
160,661 + MPMX19_06888 0.10 -3.0
160,661 + MPMX19_06888 0.10 -0.2
160,662 - MPMX19_06888 0.10 -1.7
160,662 - MPMX19_06888 0.10 +1.0
160,856 + MPMX19_06888 0.24 -0.1

Or see this region's nucleotide sequence