Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06874 and MPMX19_06875 overlap by 8 nucleotides MPMX19_06875 and MPMX19_06876 are separated by 235 nucleotides MPMX19_06876 and MPMX19_06877 overlap by 4 nucleotides
MPMX19_06874: MPMX19_06874 - hypothetical protein, at 145,614 to 146,402
_06874
MPMX19_06875: MPMX19_06875 - Carnitinyl-CoA dehydratase, at 146,395 to 147,159
_06875
MPMX19_06876: MPMX19_06876 - Inner membrane amino-acid ABC transporter permease protein YhdY, at 147,395 to 148,471
_06876
MPMX19_06877: MPMX19_06877 - hypothetical protein, at 148,468 to 149,637
_06877
Position (kb) 147
148
149 Strain fitness (log2 ratio) -2
-1
0
1 at 146.687 kb on + strand, within MPMX19_06875 at 146.688 kb on - strand, within MPMX19_06875 at 146.856 kb on - strand, within MPMX19_06875 at 147.139 kb on + strand at 147.433 kb on - strand at 147.462 kb on + strand at 147.462 kb on + strand at 147.495 kb on + strand at 147.496 kb on - strand at 147.496 kb on - strand at 147.703 kb on - strand, within MPMX19_06876 at 147.703 kb on - strand, within MPMX19_06876 at 147.753 kb on + strand, within MPMX19_06876 at 147.753 kb on + strand, within MPMX19_06876 at 148.104 kb on - strand, within MPMX19_06876 at 148.104 kb on - strand, within MPMX19_06876 at 148.104 kb on - strand, within MPMX19_06876 at 148.104 kb on - strand, within MPMX19_06876 at 148.204 kb on - strand, within MPMX19_06876 at 148.204 kb on - strand, within MPMX19_06876 at 148.204 kb on - strand, within MPMX19_06876 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 146,687 + MPMX19_06875 0.38 -0.3 146,688 - MPMX19_06875 0.38 -1.1 146,856 - MPMX19_06875 0.60 -1.3 147,139 + +0.1 147,433 - +0.7 147,462 + -0.4 147,462 + +0.1 147,495 + +0.3 147,496 - +0.3 147,496 - -1.8 147,703 - MPMX19_06876 0.29 +1.5 147,703 - MPMX19_06876 0.29 +1.2 147,753 + MPMX19_06876 0.33 +0.1 147,753 + MPMX19_06876 0.33 -0.9 148,104 - MPMX19_06876 0.66 +0.9 148,104 - MPMX19_06876 0.66 -0.3 148,104 - MPMX19_06876 0.66 -0.9 148,104 - MPMX19_06876 0.66 -1.0 148,204 - MPMX19_06876 0.75 -0.9 148,204 - MPMX19_06876 0.75 +0.0 148,204 - MPMX19_06876 0.75 -0.2 149,258 + MPMX19_06877 0.68 -1.6 149,258 + MPMX19_06877 0.68 -0.7 149,258 + MPMX19_06877 0.68 -0.0 149,258 + MPMX19_06877 0.68 -0.3 149,258 + MPMX19_06877 0.68 -1.4 149,258 + MPMX19_06877 0.68 -0.1 149,258 + MPMX19_06877 0.68 +0.1 149,258 + MPMX19_06877 0.68 -0.2 149,258 + MPMX19_06877 0.68 -0.4 149,259 - MPMX19_06877 0.68 +0.9 149,259 - MPMX19_06877 0.68 -2.2 149,259 - MPMX19_06877 0.68 -0.6 149,259 - MPMX19_06877 0.68 +0.7 149,259 - MPMX19_06877 0.68 +1.2 149,259 - MPMX19_06877 0.68 +0.8 149,259 - MPMX19_06877 0.68 +0.9
Or see this region's nucleotide sequence