Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06843

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06842 and MPMX19_06843 are separated by 66 nucleotidesMPMX19_06843 and MPMX19_06844 are separated by 251 nucleotides MPMX19_06842: MPMX19_06842 - Periplasmic dipeptide transport protein, at 108,092 to 109,699 _06842 MPMX19_06843: MPMX19_06843 - hypothetical protein, at 109,766 to 110,500 _06843 MPMX19_06844: MPMX19_06844 - Putrescine--pyruvate aminotransferase, at 110,752 to 112,128 _06844 Position (kb) 109 110 111Strain fitness (log2 ratio) -3 -2 -1 0 1at 108.813 kb on + strand, within MPMX19_06842at 108.813 kb on + strand, within MPMX19_06842at 108.813 kb on + strand, within MPMX19_06842at 108.813 kb on + strand, within MPMX19_06842at 108.813 kb on + strand, within MPMX19_06842at 108.814 kb on - strand, within MPMX19_06842at 108.814 kb on - strand, within MPMX19_06842at 108.814 kb on - strand, within MPMX19_06842at 108.994 kb on - strand, within MPMX19_06842at 109.263 kb on + strand, within MPMX19_06842at 109.263 kb on + strand, within MPMX19_06842at 109.263 kb on + strand, within MPMX19_06842at 109.263 kb on + strand, within MPMX19_06842at 109.263 kb on + strand, within MPMX19_06842at 109.263 kb on + strand, within MPMX19_06842at 109.264 kb on - strand, within MPMX19_06842at 109.264 kb on - strand, within MPMX19_06842at 109.416 kb on + strand, within MPMX19_06842at 109.416 kb on + strand, within MPMX19_06842at 109.416 kb on + strand, within MPMX19_06842at 109.416 kb on + strand, within MPMX19_06842at 109.416 kb on + strand, within MPMX19_06842at 109.416 kb on + strand, within MPMX19_06842at 109.417 kb on - strand, within MPMX19_06842at 109.417 kb on - strand, within MPMX19_06842at 109.417 kb on - strand, within MPMX19_06842at 109.417 kb on - strand, within MPMX19_06842at 109.437 kb on + strand, within MPMX19_06842at 109.437 kb on + strand, within MPMX19_06842at 109.437 kb on + strand, within MPMX19_06842at 109.437 kb on + strand, within MPMX19_06842at 109.437 kb on + strand, within MPMX19_06842at 109.437 kb on + strand, within MPMX19_06842at 109.437 kb on + strand, within MPMX19_06842at 109.437 kb on + strand, within MPMX19_06842at 109.437 kb on + strand, within MPMX19_06842at 109.438 kb on - strand, within MPMX19_06842at 109.438 kb on - strand, within MPMX19_06842at 109.438 kb on - strand, within MPMX19_06842at 109.438 kb on - strand, within MPMX19_06842at 109.438 kb on - strand, within MPMX19_06842at 109.438 kb on - strand, within MPMX19_06842at 109.438 kb on - strand, within MPMX19_06842at 109.608 kb on + strandat 109.739 kb on + strandat 109.884 kb on + strand, within MPMX19_06843at 109.885 kb on - strand, within MPMX19_06843at 109.885 kb on - strand, within MPMX19_06843at 109.885 kb on - strand, within MPMX19_06843at 109.959 kb on + strand, within MPMX19_06843at 110.163 kb on + strand, within MPMX19_06843at 110.164 kb on - strand, within MPMX19_06843at 110.248 kb on - strand, within MPMX19_06843at 110.292 kb on + strand, within MPMX19_06843at 110.292 kb on + strand, within MPMX19_06843at 110.337 kb on + strand, within MPMX19_06843at 110.337 kb on + strand, within MPMX19_06843at 110.337 kb on + strand, within MPMX19_06843at 110.472 kb on + strandat 110.473 kb on - strandat 110.473 kb on - strandat 110.473 kb on - strandat 110.473 kb on - strandat 110.864 kb on + strandat 110.864 kb on + strandat 111.113 kb on + strand, within MPMX19_06844at 111.113 kb on + strand, within MPMX19_06844at 111.114 kb on - strand, within MPMX19_06844at 111.164 kb on + strand, within MPMX19_06844at 111.164 kb on + strand, within MPMX19_06844at 111.164 kb on + strand, within MPMX19_06844at 111.164 kb on + strand, within MPMX19_06844at 111.165 kb on - strand, within MPMX19_06844at 111.165 kb on - strand, within MPMX19_06844at 111.165 kb on - strand, within MPMX19_06844at 111.165 kb on - strand, within MPMX19_06844at 111.170 kb on + strand, within MPMX19_06844at 111.170 kb on + strand, within MPMX19_06844at 111.170 kb on + strand, within MPMX19_06844at 111.170 kb on + strand, within MPMX19_06844at 111.171 kb on - strand, within MPMX19_06844at 111.171 kb on - strand, within MPMX19_06844at 111.171 kb on - strand, within MPMX19_06844at 111.171 kb on - strand, within MPMX19_06844at 111.213 kb on + strand, within MPMX19_06844at 111.214 kb on - strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.257 kb on + strand, within MPMX19_06844at 111.257 kb on + strand, within MPMX19_06844at 111.258 kb on - strand, within MPMX19_06844at 111.258 kb on - strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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108,813 + MPMX19_06842 0.45 +0.3
108,813 + MPMX19_06842 0.45 -0.4
108,813 + MPMX19_06842 0.45 +0.9
108,813 + MPMX19_06842 0.45 -0.9
108,813 + MPMX19_06842 0.45 -0.4
108,814 - MPMX19_06842 0.45 +0.7
108,814 - MPMX19_06842 0.45 -1.4
108,814 - MPMX19_06842 0.45 +0.6
108,994 - MPMX19_06842 0.56 -1.9
109,263 + MPMX19_06842 0.73 -1.0
109,263 + MPMX19_06842 0.73 +0.1
109,263 + MPMX19_06842 0.73 -0.7
109,263 + MPMX19_06842 0.73 -1.0
109,263 + MPMX19_06842 0.73 +0.6
109,263 + MPMX19_06842 0.73 -1.8
109,264 - MPMX19_06842 0.73 -0.4
109,264 - MPMX19_06842 0.73 -0.6
109,416 + MPMX19_06842 0.82 -0.7
109,416 + MPMX19_06842 0.82 -1.9
109,416 + MPMX19_06842 0.82 +0.6
109,416 + MPMX19_06842 0.82 +0.1
109,416 + MPMX19_06842 0.82 -0.3
109,416 + MPMX19_06842 0.82 -0.4
109,417 - MPMX19_06842 0.82 +0.7
109,417 - MPMX19_06842 0.82 -1.9
109,417 - MPMX19_06842 0.82 +1.2
109,417 - MPMX19_06842 0.82 +0.7
109,437 + MPMX19_06842 0.84 -1.1
109,437 + MPMX19_06842 0.84 -1.1
109,437 + MPMX19_06842 0.84 -0.1
109,437 + MPMX19_06842 0.84 -0.6
109,437 + MPMX19_06842 0.84 +0.6
109,437 + MPMX19_06842 0.84 -0.3
109,437 + MPMX19_06842 0.84 -3.6
109,437 + MPMX19_06842 0.84 +0.7
109,437 + MPMX19_06842 0.84 -0.3
109,438 - MPMX19_06842 0.84 -1.6
109,438 - MPMX19_06842 0.84 +1.1
109,438 - MPMX19_06842 0.84 -0.3
109,438 - MPMX19_06842 0.84 +0.7
109,438 - MPMX19_06842 0.84 -0.3
109,438 - MPMX19_06842 0.84 +0.5
109,438 - MPMX19_06842 0.84 -0.3
109,608 + -0.5
109,739 + +1.0
109,884 + MPMX19_06843 0.16 +0.3
109,885 - MPMX19_06843 0.16 +1.2
109,885 - MPMX19_06843 0.16 +0.6
109,885 - MPMX19_06843 0.16 +1.1
109,959 + MPMX19_06843 0.26 +1.1
110,163 + MPMX19_06843 0.54 -0.8
110,164 - MPMX19_06843 0.54 -0.9
110,248 - MPMX19_06843 0.66 +0.1
110,292 + MPMX19_06843 0.72 -1.0
110,292 + MPMX19_06843 0.72 -1.9
110,337 + MPMX19_06843 0.78 -0.4
110,337 + MPMX19_06843 0.78 +0.4
110,337 + MPMX19_06843 0.78 +0.5
110,472 + -1.5
110,473 - -0.9
110,473 - -1.8
110,473 - +0.7
110,473 - -1.9
110,864 + -0.1
110,864 + -0.1
111,113 + MPMX19_06844 0.26 -2.3
111,113 + MPMX19_06844 0.26 +0.7
111,114 - MPMX19_06844 0.26 -1.5
111,164 + MPMX19_06844 0.30 -0.8
111,164 + MPMX19_06844 0.30 -0.9
111,164 + MPMX19_06844 0.30 +0.6
111,164 + MPMX19_06844 0.30 +0.4
111,165 - MPMX19_06844 0.30 -1.4
111,165 - MPMX19_06844 0.30 -1.0
111,165 - MPMX19_06844 0.30 -0.3
111,165 - MPMX19_06844 0.30 -0.5
111,170 + MPMX19_06844 0.30 -1.1
111,170 + MPMX19_06844 0.30 +0.3
111,170 + MPMX19_06844 0.30 -0.5
111,170 + MPMX19_06844 0.30 -0.1
111,171 - MPMX19_06844 0.30 -0.2
111,171 - MPMX19_06844 0.30 +0.4
111,171 - MPMX19_06844 0.30 -2.0
111,171 - MPMX19_06844 0.30 -2.3
111,213 + MPMX19_06844 0.33 -1.7
111,214 - MPMX19_06844 0.34 +1.3
111,218 + MPMX19_06844 0.34 -0.0
111,218 + MPMX19_06844 0.34 +0.1
111,218 + MPMX19_06844 0.34 -0.8
111,218 + MPMX19_06844 0.34 -0.4
111,218 + MPMX19_06844 0.34 -1.6
111,218 + MPMX19_06844 0.34 +0.1
111,218 + MPMX19_06844 0.34 -0.4
111,219 - MPMX19_06844 0.34 -2.4
111,219 - MPMX19_06844 0.34 -0.1
111,219 - MPMX19_06844 0.34 -0.9
111,219 - MPMX19_06844 0.34 -0.7
111,219 - MPMX19_06844 0.34 -0.5
111,219 - MPMX19_06844 0.34 -0.0
111,257 + MPMX19_06844 0.37 +0.5
111,257 + MPMX19_06844 0.37 -0.3
111,258 - MPMX19_06844 0.37 +0.7
111,258 - MPMX19_06844 0.37 -0.8
111,467 + MPMX19_06844 0.52 -0.1
111,467 + MPMX19_06844 0.52 -0.5
111,467 + MPMX19_06844 0.52 -1.3
111,467 + MPMX19_06844 0.52 -0.6
111,467 + MPMX19_06844 0.52 -0.9
111,468 - MPMX19_06844 0.52 +0.3
111,468 - MPMX19_06844 0.52 -0.4
111,468 - MPMX19_06844 0.52 -1.6
111,468 - MPMX19_06844 0.52 -0.1
111,468 - MPMX19_06844 0.52 +1.1
111,468 - MPMX19_06844 0.52 -0.8
111,468 - MPMX19_06844 0.52 +0.4

Or see this region's nucleotide sequence