Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06832

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06830 and MPMX19_06831 are separated by 41 nucleotidesMPMX19_06831 and MPMX19_06832 are separated by 112 nucleotidesMPMX19_06832 and MPMX19_06833 are separated by 74 nucleotidesMPMX19_06833 and MPMX19_06834 are separated by 122 nucleotides MPMX19_06830: MPMX19_06830 - Maleate isomerase, at 95,824 to 96,609 _06830 MPMX19_06831: MPMX19_06831 - putative amino-acid permease protein YxeN, at 96,651 to 97,307 _06831 MPMX19_06832: MPMX19_06832 - L-cystine transport system permease protein YecS, at 97,420 to 98,079 _06832 MPMX19_06833: MPMX19_06833 - Glutamine transport ATP-binding protein GlnQ, at 98,154 to 98,939 _06833 MPMX19_06834: MPMX19_06834 - Vitamin B6 salvage pathway transcriptional repressor PtsJ, at 99,062 to 100,447 _06834 Position (kb) 97 98 99Strain fitness (log2 ratio) -2 -1 0 1 2 3at 96.458 kb on + strand, within MPMX19_06830at 96.458 kb on + strand, within MPMX19_06830at 96.458 kb on + strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.754 kb on + strand, within MPMX19_06831at 96.755 kb on - strand, within MPMX19_06831at 96.760 kb on + strand, within MPMX19_06831at 96.760 kb on + strand, within MPMX19_06831at 96.760 kb on + strand, within MPMX19_06831at 96.760 kb on + strand, within MPMX19_06831at 96.761 kb on - strand, within MPMX19_06831at 96.761 kb on - strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.920 kb on - strand, within MPMX19_06831at 97.003 kb on + strand, within MPMX19_06831at 97.003 kb on + strand, within MPMX19_06831at 97.003 kb on + strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.012 kb on + strand, within MPMX19_06831at 97.012 kb on + strand, within MPMX19_06831at 97.081 kb on + strand, within MPMX19_06831at 97.081 kb on + strand, within MPMX19_06831at 97.082 kb on - strand, within MPMX19_06831at 97.082 kb on - strand, within MPMX19_06831at 97.093 kb on + strand, within MPMX19_06831at 97.093 kb on + strand, within MPMX19_06831at 97.094 kb on - strand, within MPMX19_06831at 97.320 kb on + strandat 97.320 kb on + strandat 97.321 kb on - strandat 97.381 kb on + strandat 97.381 kb on + strandat 97.382 kb on - strandat 97.403 kb on + strandat 97.404 kb on - strandat 97.404 kb on - strandat 97.404 kb on - strandat 97.404 kb on - strandat 97.422 kb on - strandat 97.422 kb on - strandat 97.497 kb on - strand, within MPMX19_06832at 97.497 kb on - strand, within MPMX19_06832at 97.497 kb on - strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.788 kb on - strand, within MPMX19_06832at 97.788 kb on - strand, within MPMX19_06832at 97.868 kb on + strand, within MPMX19_06832at 97.868 kb on + strand, within MPMX19_06832at 97.868 kb on + strand, within MPMX19_06832at 97.869 kb on - strand, within MPMX19_06832at 97.869 kb on - strand, within MPMX19_06832at 97.869 kb on - strand, within MPMX19_06832at 97.869 kb on - strand, within MPMX19_06832at 97.919 kb on + strand, within MPMX19_06832at 97.920 kb on - strand, within MPMX19_06832at 97.920 kb on - strand, within MPMX19_06832at 97.920 kb on - strand, within MPMX19_06832at 98.061 kb on - strandat 99.048 kb on + strandat 99.049 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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96,458 + MPMX19_06830 0.81 +0.1
96,458 + MPMX19_06830 0.81 -0.6
96,458 + MPMX19_06830 0.81 -0.7
96,459 - MPMX19_06830 0.81 -1.3
96,459 - MPMX19_06830 0.81 -0.9
96,459 - MPMX19_06830 0.81 -0.5
96,459 - MPMX19_06830 0.81 -0.8
96,459 - MPMX19_06830 0.81 -0.2
96,459 - MPMX19_06830 0.81 +3.7
96,459 - MPMX19_06830 0.81 -1.9
96,459 - MPMX19_06830 0.81 -0.9
96,754 + MPMX19_06831 0.16 -0.5
96,755 - MPMX19_06831 0.16 -0.9
96,760 + MPMX19_06831 0.17 -1.1
96,760 + MPMX19_06831 0.17 +0.1
96,760 + MPMX19_06831 0.17 -0.9
96,760 + MPMX19_06831 0.17 -1.9
96,761 - MPMX19_06831 0.17 -1.5
96,761 - MPMX19_06831 0.17 -0.2
96,853 + MPMX19_06831 0.31 -2.1
96,853 + MPMX19_06831 0.31 +0.9
96,853 + MPMX19_06831 0.31 +1.0
96,853 + MPMX19_06831 0.31 -1.2
96,853 + MPMX19_06831 0.31 +1.7
96,853 + MPMX19_06831 0.31 +0.4
96,853 + MPMX19_06831 0.31 -0.2
96,853 + MPMX19_06831 0.31 -1.3
96,853 + MPMX19_06831 0.31 +1.5
96,853 + MPMX19_06831 0.31 -0.4
96,854 - MPMX19_06831 0.31 -0.7
96,854 - MPMX19_06831 0.31 +0.5
96,854 - MPMX19_06831 0.31 +1.2
96,854 - MPMX19_06831 0.31 -1.3
96,854 - MPMX19_06831 0.31 -0.0
96,854 - MPMX19_06831 0.31 -1.8
96,920 - MPMX19_06831 0.41 -0.6
97,003 + MPMX19_06831 0.54 -0.2
97,003 + MPMX19_06831 0.54 -0.0
97,003 + MPMX19_06831 0.54 -0.2
97,004 - MPMX19_06831 0.54 -0.9
97,004 - MPMX19_06831 0.54 +0.6
97,004 - MPMX19_06831 0.54 -1.0
97,004 - MPMX19_06831 0.54 -0.0
97,004 - MPMX19_06831 0.54 +0.4
97,004 - MPMX19_06831 0.54 -2.1
97,012 + MPMX19_06831 0.55 -0.1
97,012 + MPMX19_06831 0.55 -1.6
97,081 + MPMX19_06831 0.65 -0.8
97,081 + MPMX19_06831 0.65 -1.1
97,082 - MPMX19_06831 0.66 -0.2
97,082 - MPMX19_06831 0.66 -0.4
97,093 + MPMX19_06831 0.67 +2.5
97,093 + MPMX19_06831 0.67 -0.7
97,094 - MPMX19_06831 0.67 +0.1
97,320 + -1.6
97,320 + -0.6
97,321 - -0.1
97,381 + +1.3
97,381 + +0.5
97,382 - -0.6
97,403 + +0.7
97,404 - -1.1
97,404 - -0.9
97,404 - -1.3
97,404 - -1.1
97,422 - -0.7
97,422 - +0.4
97,497 - MPMX19_06832 0.12 +1.1
97,497 - MPMX19_06832 0.12 -0.7
97,497 - MPMX19_06832 0.12 -0.5
97,505 + MPMX19_06832 0.13 -0.4
97,505 + MPMX19_06832 0.13 -0.1
97,505 + MPMX19_06832 0.13 +0.6
97,505 + MPMX19_06832 0.13 -0.6
97,505 + MPMX19_06832 0.13 +0.2
97,505 + MPMX19_06832 0.13 +0.1
97,506 - MPMX19_06832 0.13 +1.0
97,506 - MPMX19_06832 0.13 +0.1
97,506 - MPMX19_06832 0.13 -0.5
97,506 - MPMX19_06832 0.13 +0.4
97,506 - MPMX19_06832 0.13 +0.0
97,506 - MPMX19_06832 0.13 -1.0
97,506 - MPMX19_06832 0.13 -0.6
97,788 - MPMX19_06832 0.56 -0.0
97,788 - MPMX19_06832 0.56 +0.1
97,868 + MPMX19_06832 0.68 -0.7
97,868 + MPMX19_06832 0.68 -1.1
97,868 + MPMX19_06832 0.68 -0.8
97,869 - MPMX19_06832 0.68 +1.4
97,869 - MPMX19_06832 0.68 -1.3
97,869 - MPMX19_06832 0.68 -0.7
97,869 - MPMX19_06832 0.68 -0.5
97,919 + MPMX19_06832 0.76 -1.4
97,920 - MPMX19_06832 0.76 -0.6
97,920 - MPMX19_06832 0.76 +0.5
97,920 - MPMX19_06832 0.76 +0.9
98,061 - -0.7
99,048 + -1.7
99,049 - -0.5

Or see this region's nucleotide sequence