Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06812 and MPMX19_06813 are separated by 80 nucleotides MPMX19_06813 and MPMX19_06814 overlap by 1 nucleotides
MPMX19_06812: MPMX19_06812 - hypothetical protein, at 76,789 to 78,597
_06812
MPMX19_06813: MPMX19_06813 - putative MFS-type transporter YcaD, at 78,678 to 79,955
_06813
MPMX19_06814: MPMX19_06814 - Glyoxylate/hydroxypyruvate reductase A, at 79,955 to 80,902
_06814
Position (kb) 78
79
80 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 77.963 kb on + strand, within MPMX19_06812 at 77.964 kb on - strand, within MPMX19_06812 at 77.964 kb on - strand, within MPMX19_06812 at 78.257 kb on + strand, within MPMX19_06812 at 78.257 kb on + strand, within MPMX19_06812 at 78.258 kb on - strand, within MPMX19_06812 at 78.258 kb on - strand, within MPMX19_06812 at 78.258 kb on - strand, within MPMX19_06812 at 78.644 kb on + strand at 78.644 kb on + strand at 78.895 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.055 kb on - strand, within MPMX19_06813 at 79.055 kb on - strand, within MPMX19_06813 at 79.055 kb on - strand, within MPMX19_06813 at 79.055 kb on - strand, within MPMX19_06813 at 79.055 kb on - strand, within MPMX19_06813 at 79.055 kb on - strand, within MPMX19_06813 at 79.303 kb on + strand, within MPMX19_06813 at 79.303 kb on + strand, within MPMX19_06813 at 79.303 kb on + strand, within MPMX19_06813 at 79.304 kb on - strand, within MPMX19_06813 at 79.304 kb on - strand, within MPMX19_06813 at 79.304 kb on - strand, within MPMX19_06813 at 79.304 kb on - strand, within MPMX19_06813 at 79.561 kb on + strand, within MPMX19_06813 at 79.561 kb on + strand, within MPMX19_06813 at 79.561 kb on + strand, within MPMX19_06813 at 79.561 kb on + strand, within MPMX19_06813 at 79.561 kb on + strand, within MPMX19_06813 at 79.561 kb on + strand, within MPMX19_06813 at 79.561 kb on + strand, within MPMX19_06813 at 79.561 kb on + strand, within MPMX19_06813 at 79.562 kb on - strand, within MPMX19_06813 at 79.562 kb on - strand, within MPMX19_06813 at 79.562 kb on - strand, within MPMX19_06813 at 79.562 kb on - strand, within MPMX19_06813 at 79.744 kb on + strand, within MPMX19_06813 at 79.744 kb on + strand, within MPMX19_06813 at 79.745 kb on - strand, within MPMX19_06813 at 80.908 kb on + strand at 80.908 kb on + strand at 80.908 kb on + strand at 80.908 kb on + strand at 80.910 kb on + strand at 80.910 kb on + strand at 80.911 kb on - strand at 80.911 kb on - strand at 80.911 kb on - strand at 80.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 77,963 + MPMX19_06812 0.65 -0.9 77,964 - MPMX19_06812 0.65 -0.5 77,964 - MPMX19_06812 0.65 -1.3 78,257 + MPMX19_06812 0.81 -0.4 78,257 + MPMX19_06812 0.81 -0.0 78,258 - MPMX19_06812 0.81 -1.4 78,258 - MPMX19_06812 0.81 -0.6 78,258 - MPMX19_06812 0.81 -0.3 78,644 + -0.5 78,644 + -1.0 78,895 + MPMX19_06813 0.17 -0.1 79,054 + MPMX19_06813 0.29 -0.4 79,054 + MPMX19_06813 0.29 +0.5 79,054 + MPMX19_06813 0.29 +1.4 79,054 + MPMX19_06813 0.29 +0.6 79,054 + MPMX19_06813 0.29 -0.3 79,054 + MPMX19_06813 0.29 -0.7 79,054 + MPMX19_06813 0.29 -0.4 79,054 + MPMX19_06813 0.29 +0.4 79,054 + MPMX19_06813 0.29 -0.3 79,054 + MPMX19_06813 0.29 -3.0 79,054 + MPMX19_06813 0.29 +0.3 79,055 - MPMX19_06813 0.29 -0.1 79,055 - MPMX19_06813 0.29 -0.3 79,055 - MPMX19_06813 0.29 +0.9 79,055 - MPMX19_06813 0.29 +1.0 79,055 - MPMX19_06813 0.29 -0.9 79,055 - MPMX19_06813 0.29 -0.9 79,303 + MPMX19_06813 0.49 -0.9 79,303 + MPMX19_06813 0.49 -1.3 79,303 + MPMX19_06813 0.49 -0.0 79,304 - MPMX19_06813 0.49 +0.6 79,304 - MPMX19_06813 0.49 -0.4 79,304 - MPMX19_06813 0.49 +0.4 79,304 - MPMX19_06813 0.49 -1.3 79,561 + MPMX19_06813 0.69 +0.6 79,561 + MPMX19_06813 0.69 +1.5 79,561 + MPMX19_06813 0.69 -1.1 79,561 + MPMX19_06813 0.69 +0.1 79,561 + MPMX19_06813 0.69 -0.4 79,561 + MPMX19_06813 0.69 -1.1 79,561 + MPMX19_06813 0.69 +0.4 79,561 + MPMX19_06813 0.69 -0.4 79,562 - MPMX19_06813 0.69 +0.1 79,562 - MPMX19_06813 0.69 +0.3 79,562 - MPMX19_06813 0.69 -1.8 79,562 - MPMX19_06813 0.69 -0.1 79,744 + MPMX19_06813 0.83 -1.3 79,744 + MPMX19_06813 0.83 +0.9 79,745 - MPMX19_06813 0.83 -0.1 80,908 + +1.1 80,908 + -1.1 80,908 + -0.5 80,908 + -2.6 80,910 + +0.1 80,910 + +0.1 80,911 - +0.4 80,911 - +0.1 80,911 - -1.6 80,911 - +0.4
Or see this region's nucleotide sequence