Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06805 and MPMX19_06806 are separated by 82 nucleotides MPMX19_06806 and MPMX19_06807 are separated by 58 nucleotides MPMX19_06807 and MPMX19_06808 are separated by 213 nucleotides
MPMX19_06805: MPMX19_06805 - hypothetical protein, at 69,755 to 70,840
_06805
MPMX19_06806: MPMX19_06806 - Decarboxylase NovR, at 70,923 to 71,693
_06806
MPMX19_06807: MPMX19_06807 - Solute-binding protein, at 71,752 to 72,792
_06807
MPMX19_06808: MPMX19_06808 - HTH-type transcriptional regulator DmlR, at 73,006 to 73,947
_06808
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 70.934 kb on - strand at 70.934 kb on - strand at 70.934 kb on - strand at 70.934 kb on - strand at 70.934 kb on - strand at 70.996 kb on + strand at 70.997 kb on - strand at 71.261 kb on - strand, within MPMX19_06806 at 71.275 kb on + strand, within MPMX19_06806 at 71.290 kb on + strand, within MPMX19_06806 at 71.290 kb on + strand, within MPMX19_06806 at 71.290 kb on + strand, within MPMX19_06806 at 71.290 kb on + strand, within MPMX19_06806 at 71.291 kb on - strand, within MPMX19_06806 at 71.500 kb on + strand, within MPMX19_06806 at 71.500 kb on + strand, within MPMX19_06806 at 71.500 kb on + strand, within MPMX19_06806 at 71.501 kb on - strand, within MPMX19_06806 at 71.501 kb on - strand, within MPMX19_06806 at 71.569 kb on + strand, within MPMX19_06806 at 71.569 kb on + strand, within MPMX19_06806 at 71.569 kb on + strand, within MPMX19_06806 at 71.569 kb on + strand, within MPMX19_06806 at 71.570 kb on - strand, within MPMX19_06806 at 71.570 kb on - strand, within MPMX19_06806 at 71.570 kb on - strand, within MPMX19_06806 at 71.608 kb on + strand, within MPMX19_06806 at 71.674 kb on + strand at 71.675 kb on - strand at 71.719 kb on + strand at 71.719 kb on + strand at 71.719 kb on + strand at 71.719 kb on + strand at 71.720 kb on - strand at 71.750 kb on + strand at 71.876 kb on + strand, within MPMX19_06807 at 71.876 kb on + strand, within MPMX19_06807 at 71.876 kb on + strand, within MPMX19_06807 at 71.985 kb on + strand, within MPMX19_06807 at 71.986 kb on - strand, within MPMX19_06807 at 71.986 kb on - strand, within MPMX19_06807 at 72.371 kb on + strand, within MPMX19_06807 at 72.371 kb on + strand, within MPMX19_06807 at 72.371 kb on + strand, within MPMX19_06807 at 72.372 kb on - strand, within MPMX19_06807 at 72.372 kb on - strand, within MPMX19_06807 at 72.372 kb on - strand, within MPMX19_06807 at 72.372 kb on - strand, within MPMX19_06807 at 72.380 kb on + strand, within MPMX19_06807 at 72.380 kb on + strand, within MPMX19_06807 at 72.380 kb on + strand, within MPMX19_06807 at 72.381 kb on - strand, within MPMX19_06807 at 72.405 kb on - strand, within MPMX19_06807 at 72.405 kb on - strand, within MPMX19_06807 at 72.405 kb on - strand, within MPMX19_06807 at 72.405 kb on - strand, within MPMX19_06807 at 72.405 kb on - strand, within MPMX19_06807 at 72.500 kb on + strand, within MPMX19_06807 at 72.501 kb on - strand, within MPMX19_06807 at 72.590 kb on + strand, within MPMX19_06807 at 72.591 kb on - strand, within MPMX19_06807 at 72.757 kb on + strand at 72.757 kb on + strand at 72.758 kb on - strand at 72.758 kb on - strand at 72.758 kb on - strand at 72.758 kb on - strand at 72.758 kb on - strand at 72.796 kb on + strand at 72.796 kb on + strand at 72.796 kb on + strand at 72.797 kb on - strand at 72.797 kb on - strand at 72.797 kb on - strand at 72.797 kb on - strand at 72.797 kb on - strand at 72.797 kb on - strand at 72.883 kb on + strand at 73.007 kb on + strand at 73.007 kb on + strand at 73.007 kb on + strand at 73.007 kb on + strand at 73.007 kb on + strand at 73.007 kb on + strand at 73.007 kb on + strand at 73.008 kb on - strand at 73.008 kb on - strand at 73.008 kb on - strand at 73.008 kb on - strand at 73.166 kb on + strand, within MPMX19_06808 at 73.167 kb on - strand, within MPMX19_06808 at 73.167 kb on - strand, within MPMX19_06808 at 73.167 kb on - strand, within MPMX19_06808 at 73.433 kb on + strand, within MPMX19_06808 at 73.433 kb on + strand, within MPMX19_06808 at 73.434 kb on - strand, within MPMX19_06808 at 73.434 kb on - strand, within MPMX19_06808 at 73.651 kb on - strand, within MPMX19_06808
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 70,934 - -0.6 70,934 - -0.7 70,934 - +0.9 70,934 - -1.1 70,934 - -0.3 70,996 + -0.9 70,997 - -1.0 71,261 - MPMX19_06806 0.44 -0.4 71,275 + MPMX19_06806 0.46 +0.3 71,290 + MPMX19_06806 0.48 -2.0 71,290 + MPMX19_06806 0.48 +0.4 71,290 + MPMX19_06806 0.48 -1.2 71,290 + MPMX19_06806 0.48 +1.3 71,291 - MPMX19_06806 0.48 +0.7 71,500 + MPMX19_06806 0.75 -0.9 71,500 + MPMX19_06806 0.75 -1.4 71,500 + MPMX19_06806 0.75 -0.4 71,501 - MPMX19_06806 0.75 -1.4 71,501 - MPMX19_06806 0.75 +0.2 71,569 + MPMX19_06806 0.84 -0.6 71,569 + MPMX19_06806 0.84 -1.3 71,569 + MPMX19_06806 0.84 -0.3 71,569 + MPMX19_06806 0.84 -1.4 71,570 - MPMX19_06806 0.84 +0.0 71,570 - MPMX19_06806 0.84 -1.6 71,570 - MPMX19_06806 0.84 -0.4 71,608 + MPMX19_06806 0.89 -0.3 71,674 + -0.9 71,675 - -0.4 71,719 + -0.3 71,719 + -1.2 71,719 + -1.0 71,719 + -0.6 71,720 - -2.3 71,750 + -0.8 71,876 + MPMX19_06807 0.12 +0.1 71,876 + MPMX19_06807 0.12 +0.6 71,876 + MPMX19_06807 0.12 +1.0 71,985 + MPMX19_06807 0.22 +1.2 71,986 - MPMX19_06807 0.22 +0.1 71,986 - MPMX19_06807 0.22 +0.3 72,371 + MPMX19_06807 0.59 +0.6 72,371 + MPMX19_06807 0.59 +1.0 72,371 + MPMX19_06807 0.59 +0.6 72,372 - MPMX19_06807 0.60 -0.3 72,372 - MPMX19_06807 0.60 -0.7 72,372 - MPMX19_06807 0.60 -2.1 72,372 - MPMX19_06807 0.60 -0.0 72,380 + MPMX19_06807 0.60 -1.5 72,380 + MPMX19_06807 0.60 -0.3 72,380 + MPMX19_06807 0.60 -2.0 72,381 - MPMX19_06807 0.60 -0.6 72,405 - MPMX19_06807 0.63 +0.7 72,405 - MPMX19_06807 0.63 -0.4 72,405 - MPMX19_06807 0.63 +1.1 72,405 - MPMX19_06807 0.63 -0.2 72,405 - MPMX19_06807 0.63 +0.1 72,500 + MPMX19_06807 0.72 -0.4 72,501 - MPMX19_06807 0.72 +0.2 72,590 + MPMX19_06807 0.80 -0.5 72,591 - MPMX19_06807 0.81 -0.1 72,757 + -0.3 72,757 + -0.9 72,758 - +0.2 72,758 - +0.7 72,758 - -0.9 72,758 - +0.7 72,758 - -1.7 72,796 + -0.1 72,796 + +0.7 72,796 + -0.4 72,797 - +1.7 72,797 - -2.0 72,797 - +0.8 72,797 - -1.7 72,797 - -1.9 72,797 - -0.4 72,883 + +3.3 73,007 + -0.9 73,007 + -1.1 73,007 + -1.4 73,007 + -1.0 73,007 + -0.0 73,007 + -0.5 73,007 + -0.2 73,008 - -0.3 73,008 - -1.1 73,008 - +0.5 73,008 - +0.7 73,166 + MPMX19_06808 0.17 -0.9 73,167 - MPMX19_06808 0.17 -0.7 73,167 - MPMX19_06808 0.17 -0.0 73,167 - MPMX19_06808 0.17 +0.1 73,433 + MPMX19_06808 0.45 +0.7 73,433 + MPMX19_06808 0.45 -1.4 73,434 - MPMX19_06808 0.45 +1.1 73,434 - MPMX19_06808 0.45 +0.6 73,651 - MPMX19_06808 0.68 +1.3
Or see this region's nucleotide sequence