Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06783

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06781 and MPMX19_06782 are separated by 52 nucleotidesMPMX19_06782 and MPMX19_06783 are separated by 131 nucleotidesMPMX19_06783 and MPMX19_06784 are separated by 18 nucleotides MPMX19_06781: MPMX19_06781 - hypothetical protein, at 45,573 to 45,803 _06781 MPMX19_06782: MPMX19_06782 - Pyruvate dehydrogenase complex repressor, at 45,856 to 46,659 _06782 MPMX19_06783: MPMX19_06783 - 5-keto-D-gluconate 5-reductase, at 46,791 to 47,555 _06783 MPMX19_06784: MPMX19_06784 - D-galactonate dehydratase, at 47,574 to 48,773 _06784 Position (kb) 46 47 48Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 45.845 kb on + strandat 45.845 kb on + strandat 45.846 kb on - strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.858 kb on - strandat 45.858 kb on - strandat 45.858 kb on - strandat 45.858 kb on - strandat 45.858 kb on - strandat 45.963 kb on - strand, within MPMX19_06782at 46.795 kb on + strandat 46.795 kb on + strandat 46.795 kb on + strandat 46.795 kb on + strandat 46.795 kb on + strandat 46.795 kb on + strandat 46.796 kb on - strandat 46.987 kb on + strand, within MPMX19_06783at 46.988 kb on - strand, within MPMX19_06783at 46.988 kb on - strand, within MPMX19_06783at 46.988 kb on - strand, within MPMX19_06783at 47.381 kb on + strand, within MPMX19_06783at 47.382 kb on - strand, within MPMX19_06783at 47.382 kb on - strand, within MPMX19_06783at 47.382 kb on - strand, within MPMX19_06783at 47.382 kb on - strand, within MPMX19_06783at 47.382 kb on - strand, within MPMX19_06783at 47.383 kb on + strand, within MPMX19_06783at 47.384 kb on - strand, within MPMX19_06783at 47.722 kb on + strand, within MPMX19_06784at 47.722 kb on + strand, within MPMX19_06784at 47.722 kb on + strand, within MPMX19_06784at 47.723 kb on - strand, within MPMX19_06784at 47.723 kb on - strand, within MPMX19_06784at 47.723 kb on - strand, within MPMX19_06784at 47.723 kb on - strand, within MPMX19_06784at 47.791 kb on + strand, within MPMX19_06784at 47.791 kb on + strand, within MPMX19_06784at 47.791 kb on + strand, within MPMX19_06784at 47.791 kb on + strand, within MPMX19_06784at 47.792 kb on - strand, within MPMX19_06784at 47.792 kb on - strand, within MPMX19_06784at 47.792 kb on - strand, within MPMX19_06784at 47.792 kb on - strand, within MPMX19_06784at 47.824 kb on + strand, within MPMX19_06784at 47.824 kb on + strand, within MPMX19_06784at 47.824 kb on + strand, within MPMX19_06784at 47.825 kb on - strand, within MPMX19_06784at 47.825 kb on - strand, within MPMX19_06784at 47.825 kb on - strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.942 kb on - strand, within MPMX19_06784at 48.046 kb on + strand, within MPMX19_06784at 48.046 kb on + strand, within MPMX19_06784at 48.046 kb on + strand, within MPMX19_06784at 48.047 kb on - strand, within MPMX19_06784at 48.061 kb on + strand, within MPMX19_06784at 48.061 kb on + strand, within MPMX19_06784at 48.061 kb on + strand, within MPMX19_06784at 48.061 kb on + strand, within MPMX19_06784at 48.061 kb on + strand, within MPMX19_06784at 48.061 kb on + strand, within MPMX19_06784at 48.062 kb on - strand, within MPMX19_06784at 48.062 kb on - strand, within MPMX19_06784at 48.331 kb on + strand, within MPMX19_06784at 48.394 kb on + strand, within MPMX19_06784at 48.395 kb on - strand, within MPMX19_06784at 48.395 kb on - strand, within MPMX19_06784at 48.418 kb on + strand, within MPMX19_06784at 48.418 kb on + strand, within MPMX19_06784at 48.418 kb on + strand, within MPMX19_06784at 48.418 kb on + strand, within MPMX19_06784at 48.418 kb on + strand, within MPMX19_06784at 48.419 kb on - strand, within MPMX19_06784at 48.419 kb on - strand, within MPMX19_06784at 48.530 kb on - strand, within MPMX19_06784

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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45,845 + -0.5
45,845 + -2.5
45,846 - -0.6
45,857 + -0.1
45,857 + +1.1
45,857 + -2.2
45,857 + -1.5
45,857 + +0.4
45,857 + +0.7
45,857 + -0.9
45,857 + -0.5
45,858 - +0.1
45,858 - +0.7
45,858 - +1.4
45,858 - -1.3
45,858 - +0.3
45,963 - MPMX19_06782 0.13 -0.1
46,795 + -1.3
46,795 + -2.4
46,795 + -1.6
46,795 + +0.2
46,795 + +1.1
46,795 + -0.2
46,796 - -1.4
46,987 + MPMX19_06783 0.26 -0.3
46,988 - MPMX19_06783 0.26 -0.4
46,988 - MPMX19_06783 0.26 +0.8
46,988 - MPMX19_06783 0.26 +0.5
47,381 + MPMX19_06783 0.77 +0.4
47,382 - MPMX19_06783 0.77 -0.4
47,382 - MPMX19_06783 0.77 +0.7
47,382 - MPMX19_06783 0.77 +0.3
47,382 - MPMX19_06783 0.77 +0.0
47,382 - MPMX19_06783 0.77 +0.4
47,383 + MPMX19_06783 0.77 -1.9
47,384 - MPMX19_06783 0.78 +0.5
47,722 + MPMX19_06784 0.12 -1.2
47,722 + MPMX19_06784 0.12 +0.2
47,722 + MPMX19_06784 0.12 -1.9
47,723 - MPMX19_06784 0.12 -0.7
47,723 - MPMX19_06784 0.12 -0.3
47,723 - MPMX19_06784 0.12 +0.4
47,723 - MPMX19_06784 0.12 -0.5
47,791 + MPMX19_06784 0.18 +0.0
47,791 + MPMX19_06784 0.18 -1.3
47,791 + MPMX19_06784 0.18 +1.2
47,791 + MPMX19_06784 0.18 -1.9
47,792 - MPMX19_06784 0.18 -0.8
47,792 - MPMX19_06784 0.18 +0.1
47,792 - MPMX19_06784 0.18 -0.0
47,792 - MPMX19_06784 0.18 -1.8
47,824 + MPMX19_06784 0.21 -1.4
47,824 + MPMX19_06784 0.21 -0.3
47,824 + MPMX19_06784 0.21 -1.3
47,825 - MPMX19_06784 0.21 -1.3
47,825 - MPMX19_06784 0.21 -0.2
47,825 - MPMX19_06784 0.21 +0.0
47,836 + MPMX19_06784 0.22 -0.4
47,836 + MPMX19_06784 0.22 -0.3
47,836 + MPMX19_06784 0.22 -0.8
47,836 + MPMX19_06784 0.22 -0.9
47,836 + MPMX19_06784 0.22 -0.1
47,836 + MPMX19_06784 0.22 -0.6
47,836 + MPMX19_06784 0.22 -1.1
47,836 + MPMX19_06784 0.22 -0.0
47,836 + MPMX19_06784 0.22 +2.2
47,836 + MPMX19_06784 0.22 +0.8
47,836 + MPMX19_06784 0.22 -0.2
47,837 - MPMX19_06784 0.22 +0.3
47,837 - MPMX19_06784 0.22 -1.7
47,837 - MPMX19_06784 0.22 -1.4
47,837 - MPMX19_06784 0.22 -0.3
47,837 - MPMX19_06784 0.22 -0.3
47,837 - MPMX19_06784 0.22 -0.6
47,837 - MPMX19_06784 0.22 -1.1
47,837 - MPMX19_06784 0.22 -1.3
47,837 - MPMX19_06784 0.22 -1.5
47,942 - MPMX19_06784 0.31 +0.0
48,046 + MPMX19_06784 0.39 +0.7
48,046 + MPMX19_06784 0.39 -0.9
48,046 + MPMX19_06784 0.39 +0.7
48,047 - MPMX19_06784 0.39 +0.1
48,061 + MPMX19_06784 0.41 -0.2
48,061 + MPMX19_06784 0.41 -0.1
48,061 + MPMX19_06784 0.41 +0.1
48,061 + MPMX19_06784 0.41 -1.7
48,061 + MPMX19_06784 0.41 -0.7
48,061 + MPMX19_06784 0.41 -0.0
48,062 - MPMX19_06784 0.41 -1.1
48,062 - MPMX19_06784 0.41 -0.7
48,331 + MPMX19_06784 0.63 -1.9
48,394 + MPMX19_06784 0.68 +0.0
48,395 - MPMX19_06784 0.68 -0.3
48,395 - MPMX19_06784 0.68 +0.3
48,418 + MPMX19_06784 0.70 -2.4
48,418 + MPMX19_06784 0.70 -0.1
48,418 + MPMX19_06784 0.70 -0.4
48,418 + MPMX19_06784 0.70 -3.8
48,418 + MPMX19_06784 0.70 +1.1
48,419 - MPMX19_06784 0.70 -0.7
48,419 - MPMX19_06784 0.70 +0.1
48,530 - MPMX19_06784 0.80 -0.7

Or see this region's nucleotide sequence