Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06774

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06772 and MPMX19_06773 are separated by 147 nucleotidesMPMX19_06773 and MPMX19_06774 overlap by 4 nucleotidesMPMX19_06774 and MPMX19_06775 are separated by 32 nucleotides MPMX19_06772: MPMX19_06772 - hypothetical protein, at 38,444 to 39,004 _06772 MPMX19_06773: MPMX19_06773 - 2-(R)-hydroxypropyl-CoM dehydrogenase, at 39,152 to 39,940 _06773 MPMX19_06774: MPMX19_06774 - hypothetical protein, at 39,937 to 40,635 _06774 MPMX19_06775: MPMX19_06775 - Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase, at 40,668 to 41,561 _06775 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 38.937 kb on - strand, within MPMX19_06772at 38.937 kb on - strand, within MPMX19_06772at 38.937 kb on - strand, within MPMX19_06772at 38.937 kb on - strand, within MPMX19_06772at 38.937 kb on - strand, within MPMX19_06772at 38.937 kb on - strand, within MPMX19_06772at 38.937 kb on - strand, within MPMX19_06772at 38.954 kb on + strandat 38.954 kb on + strandat 38.954 kb on + strandat 38.954 kb on + strandat 38.955 kb on - strandat 38.955 kb on - strandat 39.046 kb on + strandat 39.047 kb on - strandat 39.104 kb on - strandat 39.719 kb on + strand, within MPMX19_06773at 39.719 kb on + strand, within MPMX19_06773at 39.719 kb on + strand, within MPMX19_06773at 39.719 kb on + strand, within MPMX19_06773at 39.720 kb on - strand, within MPMX19_06773at 39.833 kb on + strand, within MPMX19_06773at 39.834 kb on - strand, within MPMX19_06773at 39.834 kb on - strand, within MPMX19_06773at 39.834 kb on - strand, within MPMX19_06773at 39.834 kb on - strand, within MPMX19_06773at 39.834 kb on - strand, within MPMX19_06773at 40.010 kb on + strand, within MPMX19_06774at 40.010 kb on + strand, within MPMX19_06774at 40.011 kb on - strand, within MPMX19_06774at 40.011 kb on - strand, within MPMX19_06774at 40.011 kb on - strand, within MPMX19_06774at 40.011 kb on - strand, within MPMX19_06774at 40.114 kb on + strand, within MPMX19_06774at 40.114 kb on + strand, within MPMX19_06774at 40.115 kb on - strand, within MPMX19_06774at 40.115 kb on - strand, within MPMX19_06774at 40.115 kb on - strand, within MPMX19_06774at 40.115 kb on - strand, within MPMX19_06774at 40.150 kb on + strand, within MPMX19_06774at 40.150 kb on + strand, within MPMX19_06774at 40.150 kb on + strand, within MPMX19_06774at 40.151 kb on - strand, within MPMX19_06774at 40.151 kb on - strand, within MPMX19_06774at 40.151 kb on - strand, within MPMX19_06774at 40.151 kb on - strand, within MPMX19_06774at 40.423 kb on + strand, within MPMX19_06774at 40.423 kb on + strand, within MPMX19_06774at 40.423 kb on + strand, within MPMX19_06774at 40.881 kb on + strand, within MPMX19_06775at 40.881 kb on + strand, within MPMX19_06775at 40.882 kb on - strand, within MPMX19_06775at 41.022 kb on + strand, within MPMX19_06775at 41.022 kb on + strand, within MPMX19_06775at 41.023 kb on - strand, within MPMX19_06775at 41.140 kb on - strand, within MPMX19_06775at 41.140 kb on - strand, within MPMX19_06775at 41.140 kb on - strand, within MPMX19_06775at 41.217 kb on + strand, within MPMX19_06775at 41.218 kb on - strand, within MPMX19_06775at 41.319 kb on + strand, within MPMX19_06775at 41.319 kb on + strand, within MPMX19_06775at 41.319 kb on + strand, within MPMX19_06775at 41.320 kb on - strand, within MPMX19_06775at 41.320 kb on - strand, within MPMX19_06775at 41.320 kb on - strand, within MPMX19_06775at 41.320 kb on - strand, within MPMX19_06775at 41.320 kb on - strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.496 kb on + strandat 41.496 kb on + strandat 41.496 kb on + strandat 41.496 kb on + strandat 41.496 kb on + strandat 41.496 kb on + strandat 41.496 kb on + strandat 41.497 kb on - strandat 41.497 kb on - strandat 41.497 kb on - strandat 41.627 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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38,937 - MPMX19_06772 0.88 -1.1
38,937 - MPMX19_06772 0.88 -0.5
38,937 - MPMX19_06772 0.88 -1.0
38,937 - MPMX19_06772 0.88 +1.3
38,937 - MPMX19_06772 0.88 -0.1
38,937 - MPMX19_06772 0.88 +0.2
38,937 - MPMX19_06772 0.88 -0.6
38,954 + -0.6
38,954 + -1.4
38,954 + -0.0
38,954 + +0.4
38,955 - -0.2
38,955 - -2.0
39,046 + -0.3
39,047 - -0.9
39,104 - -1.4
39,719 + MPMX19_06773 0.72 -0.2
39,719 + MPMX19_06773 0.72 -2.0
39,719 + MPMX19_06773 0.72 -1.0
39,719 + MPMX19_06773 0.72 -0.1
39,720 - MPMX19_06773 0.72 +1.7
39,833 + MPMX19_06773 0.86 -0.7
39,834 - MPMX19_06773 0.86 +2.2
39,834 - MPMX19_06773 0.86 +0.7
39,834 - MPMX19_06773 0.86 +0.1
39,834 - MPMX19_06773 0.86 +1.7
39,834 - MPMX19_06773 0.86 -0.6
40,010 + MPMX19_06774 0.10 +0.3
40,010 + MPMX19_06774 0.10 -0.4
40,011 - MPMX19_06774 0.11 +0.4
40,011 - MPMX19_06774 0.11 +0.7
40,011 - MPMX19_06774 0.11 +0.6
40,011 - MPMX19_06774 0.11 -0.3
40,114 + MPMX19_06774 0.25 -1.7
40,114 + MPMX19_06774 0.25 +0.0
40,115 - MPMX19_06774 0.25 +0.2
40,115 - MPMX19_06774 0.25 -1.1
40,115 - MPMX19_06774 0.25 +1.3
40,115 - MPMX19_06774 0.25 +1.4
40,150 + MPMX19_06774 0.30 +0.0
40,150 + MPMX19_06774 0.30 -0.1
40,150 + MPMX19_06774 0.30 -1.0
40,151 - MPMX19_06774 0.31 +1.2
40,151 - MPMX19_06774 0.31 -0.9
40,151 - MPMX19_06774 0.31 -0.6
40,151 - MPMX19_06774 0.31 -0.3
40,423 + MPMX19_06774 0.70 +0.6
40,423 + MPMX19_06774 0.70 +0.9
40,423 + MPMX19_06774 0.70 -0.0
40,881 + MPMX19_06775 0.24 +0.3
40,881 + MPMX19_06775 0.24 -1.3
40,882 - MPMX19_06775 0.24 +0.6
41,022 + MPMX19_06775 0.40 -0.7
41,022 + MPMX19_06775 0.40 -0.4
41,023 - MPMX19_06775 0.40 -0.3
41,140 - MPMX19_06775 0.53 -0.7
41,140 - MPMX19_06775 0.53 +0.7
41,140 - MPMX19_06775 0.53 -0.1
41,217 + MPMX19_06775 0.61 -0.0
41,218 - MPMX19_06775 0.62 -1.2
41,319 + MPMX19_06775 0.73 -0.5
41,319 + MPMX19_06775 0.73 -2.5
41,319 + MPMX19_06775 0.73 +0.4
41,320 - MPMX19_06775 0.73 -1.3
41,320 - MPMX19_06775 0.73 +0.1
41,320 - MPMX19_06775 0.73 -1.7
41,320 - MPMX19_06775 0.73 -0.3
41,320 - MPMX19_06775 0.73 -0.7
41,331 + MPMX19_06775 0.74 +0.1
41,331 + MPMX19_06775 0.74 -0.8
41,331 + MPMX19_06775 0.74 -0.6
41,331 + MPMX19_06775 0.74 -0.6
41,331 + MPMX19_06775 0.74 -1.6
41,331 + MPMX19_06775 0.74 -0.4
41,331 + MPMX19_06775 0.74 -1.6
41,331 + MPMX19_06775 0.74 +1.1
41,331 + MPMX19_06775 0.74 -0.1
41,331 + MPMX19_06775 0.74 +0.5
41,331 + MPMX19_06775 0.74 +1.2
41,331 + MPMX19_06775 0.74 -0.5
41,331 + MPMX19_06775 0.74 +0.5
41,331 + MPMX19_06775 0.74 -0.1
41,331 + MPMX19_06775 0.74 -1.7
41,332 - MPMX19_06775 0.74 +0.6
41,332 - MPMX19_06775 0.74 -0.5
41,332 - MPMX19_06775 0.74 -0.4
41,332 - MPMX19_06775 0.74 +0.8
41,332 - MPMX19_06775 0.74 -0.8
41,332 - MPMX19_06775 0.74 -0.9
41,332 - MPMX19_06775 0.74 -1.2
41,332 - MPMX19_06775 0.74 -0.4
41,332 - MPMX19_06775 0.74 -1.7
41,332 - MPMX19_06775 0.74 +0.1
41,332 - MPMX19_06775 0.74 -1.3
41,332 - MPMX19_06775 0.74 -0.9
41,332 - MPMX19_06775 0.74 -1.3
41,332 - MPMX19_06775 0.74 -1.9
41,496 + +0.7
41,496 + -0.6
41,496 + -0.4
41,496 + -0.5
41,496 + +0.1
41,496 + -0.7
41,496 + +1.3
41,497 - -1.7
41,497 - +0.3
41,497 - -0.3
41,627 + +0.6

Or see this region's nucleotide sequence