Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06759

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06757 and MPMX19_06758 are separated by 26 nucleotidesMPMX19_06758 and MPMX19_06759 overlap by 4 nucleotidesMPMX19_06759 and MPMX19_06760 are separated by 49 nucleotides MPMX19_06757: MPMX19_06757 - hypothetical protein, at 23,247 to 24,002 _06757 MPMX19_06758: MPMX19_06758 - Putative aliphatic sulfonates transport permease protein SsuC, at 24,029 to 24,910 _06758 MPMX19_06759: MPMX19_06759 - Taurine import ATP-binding protein TauB, at 24,907 to 25,710 _06759 MPMX19_06760: MPMX19_06760 - Taurine-binding periplasmic protein, at 25,760 to 26,767 _06760 Position (kb) 24 25 26Strain fitness (log2 ratio) -2 -1 0 1at 23.932 kb on + strandat 23.932 kb on + strandat 23.932 kb on + strandat 23.933 kb on - strandat 23.933 kb on - strandat 24.466 kb on - strand, within MPMX19_06758at 24.466 kb on - strand, within MPMX19_06758at 24.466 kb on - strand, within MPMX19_06758at 25.319 kb on + strand, within MPMX19_06759at 25.320 kb on - strand, within MPMX19_06759at 25.320 kb on - strand, within MPMX19_06759at 25.320 kb on - strand, within MPMX19_06759at 25.320 kb on - strand, within MPMX19_06759at 25.320 kb on - strand, within MPMX19_06759at 25.679 kb on + strandat 25.679 kb on + strandat 25.680 kb on - strandat 25.761 kb on + strandat 25.761 kb on + strandat 25.761 kb on + strandat 25.761 kb on + strandat 25.761 kb on + strandat 25.761 kb on + strandat 25.761 kb on + strandat 25.762 kb on - strandat 25.762 kb on - strandat 25.762 kb on - strandat 25.762 kb on - strandat 25.806 kb on + strandat 25.806 kb on + strandat 26.325 kb on + strand, within MPMX19_06760at 26.325 kb on + strand, within MPMX19_06760at 26.325 kb on + strand, within MPMX19_06760at 26.325 kb on + strand, within MPMX19_06760at 26.325 kb on + strand, within MPMX19_06760at 26.326 kb on - strand, within MPMX19_06760at 26.326 kb on - strand, within MPMX19_06760at 26.326 kb on - strand, within MPMX19_06760at 26.326 kb on - strand, within MPMX19_06760at 26.326 kb on - strand, within MPMX19_06760at 26.326 kb on - strand, within MPMX19_06760at 26.326 kb on - strand, within MPMX19_06760at 26.337 kb on + strand, within MPMX19_06760at 26.337 kb on + strand, within MPMX19_06760at 26.338 kb on - strand, within MPMX19_06760at 26.338 kb on - strand, within MPMX19_06760at 26.595 kb on + strand, within MPMX19_06760at 26.595 kb on + strand, within MPMX19_06760at 26.596 kb on - strand, within MPMX19_06760at 26.596 kb on - strand, within MPMX19_06760at 26.596 kb on - strand, within MPMX19_06760at 26.653 kb on + strand, within MPMX19_06760at 26.654 kb on - strand, within MPMX19_06760at 26.654 kb on - strand, within MPMX19_06760at 26.661 kb on + strand, within MPMX19_06760

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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23,932 + +0.3
23,932 + -0.1
23,932 + -2.6
23,933 - -2.1
23,933 - -1.6
24,466 - MPMX19_06758 0.50 -0.7
24,466 - MPMX19_06758 0.50 -0.1
24,466 - MPMX19_06758 0.50 -2.1
25,319 + MPMX19_06759 0.51 +0.6
25,320 - MPMX19_06759 0.51 +1.1
25,320 - MPMX19_06759 0.51 -0.7
25,320 - MPMX19_06759 0.51 +0.9
25,320 - MPMX19_06759 0.51 +0.2
25,320 - MPMX19_06759 0.51 -0.9
25,679 + -1.3
25,679 + -0.9
25,680 - -0.3
25,761 + -0.8
25,761 + +0.6
25,761 + +0.9
25,761 + -1.4
25,761 + -0.9
25,761 + -1.1
25,761 + +0.7
25,762 - +0.1
25,762 - -0.5
25,762 - -0.6
25,762 - +0.1
25,806 + -0.3
25,806 + -0.6
26,325 + MPMX19_06760 0.56 -1.1
26,325 + MPMX19_06760 0.56 -0.5
26,325 + MPMX19_06760 0.56 -0.3
26,325 + MPMX19_06760 0.56 -1.0
26,325 + MPMX19_06760 0.56 -0.3
26,326 - MPMX19_06760 0.56 -1.3
26,326 - MPMX19_06760 0.56 +0.1
26,326 - MPMX19_06760 0.56 -1.6
26,326 - MPMX19_06760 0.56 -1.4
26,326 - MPMX19_06760 0.56 +0.3
26,326 - MPMX19_06760 0.56 -0.9
26,326 - MPMX19_06760 0.56 +0.7
26,337 + MPMX19_06760 0.57 -0.4
26,337 + MPMX19_06760 0.57 -2.2
26,338 - MPMX19_06760 0.57 +0.5
26,338 - MPMX19_06760 0.57 -0.6
26,595 + MPMX19_06760 0.83 -2.1
26,595 + MPMX19_06760 0.83 -1.1
26,596 - MPMX19_06760 0.83 -1.6
26,596 - MPMX19_06760 0.83 -2.3
26,596 - MPMX19_06760 0.83 -0.4
26,653 + MPMX19_06760 0.89 +0.5
26,654 - MPMX19_06760 0.89 +1.7
26,654 - MPMX19_06760 0.89 +0.1
26,661 + MPMX19_06760 0.89 -1.1

Or see this region's nucleotide sequence