Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06745 and MPMX19_06746 are separated by 82 nucleotides MPMX19_06746 and MPMX19_06747 overlap by 4 nucleotides MPMX19_06747 and MPMX19_06748 are separated by 3 nucleotides
MPMX19_06745: MPMX19_06745 - hypothetical protein, at 9,382 to 11,610
_06745
MPMX19_06746: MPMX19_06746 - Chemotaxis protein CheW, at 11,693 to 12,223
_06746
MPMX19_06747: MPMX19_06747 - Chemotaxis protein methyltransferase, at 12,220 to 13,107
_06747
MPMX19_06748: MPMX19_06748 - Protein-glutamate methylesterase/protein-glutamine glutaminase of group 3 operon, at 13,111 to 14,235
_06748
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 11.368 kb on + strand, within MPMX19_06745 at 11.369 kb on - strand, within MPMX19_06745 at 11.369 kb on - strand, within MPMX19_06745 at 11.369 kb on - strand, within MPMX19_06745 at 11.369 kb on - strand, within MPMX19_06745 at 11.597 kb on - strand at 11.729 kb on + strand at 11.729 kb on + strand at 11.729 kb on + strand at 11.729 kb on + strand at 11.729 kb on + strand at 11.730 kb on - strand at 11.730 kb on - strand at 11.730 kb on - strand at 11.766 kb on + strand, within MPMX19_06746 at 11.766 kb on + strand, within MPMX19_06746 at 11.767 kb on - strand, within MPMX19_06746 at 12.421 kb on + strand, within MPMX19_06747 at 12.421 kb on + strand, within MPMX19_06747 at 12.422 kb on - strand, within MPMX19_06747 at 12.422 kb on - strand, within MPMX19_06747 at 12.422 kb on - strand, within MPMX19_06747 at 12.422 kb on - strand, within MPMX19_06747 at 12.640 kb on + strand, within MPMX19_06747 at 12.640 kb on + strand, within MPMX19_06747 at 12.640 kb on + strand, within MPMX19_06747 at 12.640 kb on + strand, within MPMX19_06747 at 12.641 kb on - strand, within MPMX19_06747 at 12.641 kb on - strand, within MPMX19_06747 at 12.641 kb on - strand, within MPMX19_06747 at 12.641 kb on - strand, within MPMX19_06747 at 12.715 kb on - strand, within MPMX19_06747 at 12.715 kb on - strand, within MPMX19_06747 at 12.715 kb on - strand, within MPMX19_06747 at 12.802 kb on + strand, within MPMX19_06747 at 12.803 kb on - strand, within MPMX19_06747 at 12.803 kb on - strand, within MPMX19_06747 at 12.803 kb on - strand, within MPMX19_06747 at 12.904 kb on + strand, within MPMX19_06747 at 12.955 kb on + strand, within MPMX19_06747 at 12.956 kb on - strand, within MPMX19_06747 at 12.956 kb on - strand, within MPMX19_06747 at 13.228 kb on + strand, within MPMX19_06748 at 13.228 kb on + strand, within MPMX19_06748 at 13.228 kb on + strand, within MPMX19_06748 at 13.228 kb on + strand, within MPMX19_06748 at 13.773 kb on + strand, within MPMX19_06748 at 13.773 kb on + strand, within MPMX19_06748 at 13.773 kb on + strand, within MPMX19_06748 at 13.773 kb on + strand, within MPMX19_06748 at 13.773 kb on + strand, within MPMX19_06748 at 13.774 kb on - strand, within MPMX19_06748 at 13.774 kb on - strand, within MPMX19_06748 at 13.774 kb on - strand, within MPMX19_06748 at 13.858 kb on - strand, within MPMX19_06748 at 13.902 kb on + strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.930 kb on + strand, within MPMX19_06748
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 11,368 + MPMX19_06745 0.89 -0.3 11,369 - MPMX19_06745 0.89 +0.1 11,369 - MPMX19_06745 0.89 -0.8 11,369 - MPMX19_06745 0.89 -0.4 11,369 - MPMX19_06745 0.89 +0.1 11,597 - -0.3 11,729 + -1.3 11,729 + -1.3 11,729 + -0.4 11,729 + -1.2 11,729 + -1.3 11,730 - -1.4 11,730 - +0.1 11,730 - -1.2 11,766 + MPMX19_06746 0.14 -0.2 11,766 + MPMX19_06746 0.14 +0.7 11,767 - MPMX19_06746 0.14 -0.5 12,421 + MPMX19_06747 0.23 -0.0 12,421 + MPMX19_06747 0.23 +0.5 12,422 - MPMX19_06747 0.23 -1.6 12,422 - MPMX19_06747 0.23 -0.3 12,422 - MPMX19_06747 0.23 +1.7 12,422 - MPMX19_06747 0.23 -0.9 12,640 + MPMX19_06747 0.47 +0.1 12,640 + MPMX19_06747 0.47 -2.5 12,640 + MPMX19_06747 0.47 -1.2 12,640 + MPMX19_06747 0.47 -0.1 12,641 - MPMX19_06747 0.47 -0.2 12,641 - MPMX19_06747 0.47 -0.0 12,641 - MPMX19_06747 0.47 +0.1 12,641 - MPMX19_06747 0.47 -0.1 12,715 - MPMX19_06747 0.56 +0.1 12,715 - MPMX19_06747 0.56 -0.1 12,715 - MPMX19_06747 0.56 +1.1 12,802 + MPMX19_06747 0.66 +1.1 12,803 - MPMX19_06747 0.66 +0.7 12,803 - MPMX19_06747 0.66 +0.1 12,803 - MPMX19_06747 0.66 -1.7 12,904 + MPMX19_06747 0.77 +0.3 12,955 + MPMX19_06747 0.83 -2.4 12,956 - MPMX19_06747 0.83 -1.9 12,956 - MPMX19_06747 0.83 -0.5 13,228 + MPMX19_06748 0.10 -1.1 13,228 + MPMX19_06748 0.10 +0.3 13,228 + MPMX19_06748 0.10 +0.9 13,228 + MPMX19_06748 0.10 -2.7 13,773 + MPMX19_06748 0.59 +0.5 13,773 + MPMX19_06748 0.59 -2.4 13,773 + MPMX19_06748 0.59 +1.1 13,773 + MPMX19_06748 0.59 +3.5 13,773 + MPMX19_06748 0.59 -1.3 13,774 - MPMX19_06748 0.59 -0.7 13,774 - MPMX19_06748 0.59 +0.2 13,774 - MPMX19_06748 0.59 -0.7 13,858 - MPMX19_06748 0.66 +0.6 13,902 + MPMX19_06748 0.70 -1.1 13,903 - MPMX19_06748 0.70 -1.1 13,903 - MPMX19_06748 0.70 -0.7 13,903 - MPMX19_06748 0.70 -0.7 13,903 - MPMX19_06748 0.70 +0.4 13,903 - MPMX19_06748 0.70 -0.6 13,903 - MPMX19_06748 0.70 +0.2 13,903 - MPMX19_06748 0.70 +1.1 13,903 - MPMX19_06748 0.70 +1.7 13,903 - MPMX19_06748 0.70 -2.3 13,930 + MPMX19_06748 0.73 -1.6
Or see this region's nucleotide sequence