Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06737

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06735 and MPMX19_06736 are separated by 23 nucleotidesMPMX19_06736 and MPMX19_06737 are separated by 19 nucleotidesMPMX19_06737 and MPMX19_06738 are separated by 17 nucleotides MPMX19_06735: MPMX19_06735 - hypothetical protein, at 1 to 1,188 _06735 MPMX19_06736: MPMX19_06736 - hypothetical protein, at 1,212 to 1,721 _06736 MPMX19_06737: MPMX19_06737 - 2-oxoisovalerate dehydrogenase subunit beta, at 1,741 to 2,712 _06737 MPMX19_06738: MPMX19_06738 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 2,730 to 3,680 _06738 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1at 1.318 kb on + strand, within MPMX19_06736at 1.319 kb on - strand, within MPMX19_06736at 1.333 kb on + strand, within MPMX19_06736at 1.333 kb on + strand, within MPMX19_06736at 1.334 kb on - strand, within MPMX19_06736at 1.334 kb on - strand, within MPMX19_06736at 1.618 kb on + strand, within MPMX19_06736at 1.618 kb on + strand, within MPMX19_06736at 1.619 kb on - strand, within MPMX19_06736at 1.619 kb on - strand, within MPMX19_06736at 1.619 kb on - strand, within MPMX19_06736at 1.700 kb on + strandat 1.701 kb on - strandat 1.701 kb on - strandat 1.702 kb on + strandat 1.702 kb on + strandat 1.702 kb on + strandat 1.703 kb on - strandat 1.703 kb on - strandat 1.703 kb on - strandat 1.721 kb on + strandat 1.721 kb on + strandat 1.721 kb on + strandat 1.721 kb on + strandat 1.721 kb on + strandat 1.722 kb on - strandat 1.722 kb on - strandat 1.722 kb on - strandat 1.722 kb on - strandat 2.198 kb on + strand, within MPMX19_06737at 2.199 kb on - strand, within MPMX19_06737at 2.199 kb on - strand, within MPMX19_06737at 2.423 kb on + strand, within MPMX19_06737at 2.423 kb on + strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.465 kb on + strand, within MPMX19_06737at 2.465 kb on + strand, within MPMX19_06737at 2.737 kb on + strandat 2.737 kb on + strandat 2.737 kb on + strandat 2.737 kb on + strandat 2.737 kb on + strandat 2.737 kb on + strandat 2.738 kb on - strandat 2.938 kb on + strand, within MPMX19_06738at 2.938 kb on + strand, within MPMX19_06738at 2.938 kb on + strand, within MPMX19_06738at 2.938 kb on + strand, within MPMX19_06738at 2.939 kb on - strand, within MPMX19_06738at 2.939 kb on - strand, within MPMX19_06738at 2.977 kb on + strand, within MPMX19_06738at 2.978 kb on - strand, within MPMX19_06738at 3.098 kb on - strand, within MPMX19_06738at 3.098 kb on - strand, within MPMX19_06738at 3.184 kb on + strand, within MPMX19_06738at 3.184 kb on + strand, within MPMX19_06738at 3.184 kb on + strand, within MPMX19_06738at 3.184 kb on + strand, within MPMX19_06738at 3.184 kb on + strand, within MPMX19_06738at 3.185 kb on - strand, within MPMX19_06738at 3.185 kb on - strand, within MPMX19_06738at 3.185 kb on - strand, within MPMX19_06738at 3.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,318 + MPMX19_06736 0.21 -0.4
1,319 - MPMX19_06736 0.21 -0.4
1,333 + MPMX19_06736 0.24 -0.4
1,333 + MPMX19_06736 0.24 -0.1
1,334 - MPMX19_06736 0.24 -0.8
1,334 - MPMX19_06736 0.24 +0.3
1,618 + MPMX19_06736 0.80 -0.5
1,618 + MPMX19_06736 0.80 -1.4
1,619 - MPMX19_06736 0.80 -1.1
1,619 - MPMX19_06736 0.80 +0.4
1,619 - MPMX19_06736 0.80 -0.4
1,700 + +0.5
1,701 - -1.8
1,701 - +1.4
1,702 + -0.1
1,702 + +1.6
1,702 + -0.3
1,703 - +0.4
1,703 - -0.7
1,703 - -0.6
1,721 + +0.7
1,721 + +1.4
1,721 + -0.3
1,721 + +0.8
1,721 + -1.5
1,722 - -0.6
1,722 - +1.2
1,722 - -2.0
1,722 - -2.0
2,198 + MPMX19_06737 0.47 +0.6
2,199 - MPMX19_06737 0.47 -1.6
2,199 - MPMX19_06737 0.47 -1.3
2,423 + MPMX19_06737 0.70 +0.3
2,423 + MPMX19_06737 0.70 +0.7
2,424 - MPMX19_06737 0.70 +1.7
2,424 - MPMX19_06737 0.70 +0.7
2,424 - MPMX19_06737 0.70 -0.9
2,424 - MPMX19_06737 0.70 -2.6
2,424 - MPMX19_06737 0.70 -1.1
2,424 - MPMX19_06737 0.70 +0.4
2,465 + MPMX19_06737 0.74 -2.1
2,465 + MPMX19_06737 0.74 +0.0
2,737 + +1.1
2,737 + -2.1
2,737 + -1.5
2,737 + -1.1
2,737 + -0.0
2,737 + +0.4
2,738 - -0.4
2,938 + MPMX19_06738 0.22 -0.2
2,938 + MPMX19_06738 0.22 +1.0
2,938 + MPMX19_06738 0.22 +0.1
2,938 + MPMX19_06738 0.22 -0.4
2,939 - MPMX19_06738 0.22 -0.1
2,939 - MPMX19_06738 0.22 +0.5
2,977 + MPMX19_06738 0.26 +0.4
2,978 - MPMX19_06738 0.26 -0.4
3,098 - MPMX19_06738 0.39 -0.2
3,098 - MPMX19_06738 0.39 +1.3
3,184 + MPMX19_06738 0.48 -1.8
3,184 + MPMX19_06738 0.48 -0.3
3,184 + MPMX19_06738 0.48 -0.3
3,184 + MPMX19_06738 0.48 -0.8
3,184 + MPMX19_06738 0.48 -1.3
3,185 - MPMX19_06738 0.48 -0.3
3,185 - MPMX19_06738 0.48 -0.9
3,185 - MPMX19_06738 0.48 -2.0
3,626 - +0.6

Or see this region's nucleotide sequence