Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06696

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06695 and MPMX19_06696 are separated by 193 nucleotidesMPMX19_06696 and MPMX19_06697 are separated by 154 nucleotidesMPMX19_06697 and MPMX19_06698 are separated by 11 nucleotides MPMX19_06695: MPMX19_06695 - hypothetical protein, at 264,964 to 266,169 _06695 MPMX19_06696: MPMX19_06696 - hypothetical protein, at 266,363 to 266,851 _06696 MPMX19_06697: MPMX19_06697 - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase, at 267,006 to 267,548 _06697 MPMX19_06698: MPMX19_06698 - hypothetical protein, at 267,560 to 267,949 _06698 Position (kb) 266 267Strain fitness (log2 ratio) -2 -1 0 1 2at 265.970 kb on + strand, within MPMX19_06695at 265.970 kb on + strand, within MPMX19_06695at 265.970 kb on + strand, within MPMX19_06695at 265.970 kb on + strand, within MPMX19_06695at 265.970 kb on + strand, within MPMX19_06695at 265.970 kb on + strand, within MPMX19_06695at 265.970 kb on + strand, within MPMX19_06695at 265.970 kb on + strand, within MPMX19_06695at 265.970 kb on + strand, within MPMX19_06695at 265.970 kb on + strand, within MPMX19_06695at 265.971 kb on - strand, within MPMX19_06695at 265.971 kb on - strand, within MPMX19_06695at 265.971 kb on - strand, within MPMX19_06695at 265.971 kb on - strand, within MPMX19_06695at 265.971 kb on - strand, within MPMX19_06695at 265.971 kb on - strand, within MPMX19_06695at 265.971 kb on - strand, within MPMX19_06695at 265.971 kb on - strand, within MPMX19_06695at 265.971 kb on - strand, within MPMX19_06695at 265.971 kb on - strand, within MPMX19_06695at 265.971 kb on - strand, within MPMX19_06695at 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.135 kb on + strandat 266.136 kb on - strandat 266.136 kb on - strandat 266.136 kb on - strandat 266.136 kb on - strandat 266.136 kb on - strandat 266.136 kb on - strandat 266.136 kb on - strandat 266.136 kb on - strandat 266.136 kb on - strandat 266.136 kb on - strandat 266.136 kb on - strandat 266.136 kb on - strandat 266.136 kb on - strandat 266.136 kb on - strandat 266.136 kb on - strandat 266.136 kb on - strandat 266.136 kb on - strandat 266.171 kb on - strandat 266.171 kb on - strandat 266.219 kb on + strandat 266.498 kb on + strand, within MPMX19_06696at 266.498 kb on + strand, within MPMX19_06696at 266.498 kb on + strand, within MPMX19_06696at 266.498 kb on + strand, within MPMX19_06696at 266.498 kb on + strand, within MPMX19_06696at 266.499 kb on - strand, within MPMX19_06696at 266.499 kb on - strand, within MPMX19_06696at 266.899 kb on + strandat 266.899 kb on + strandat 266.899 kb on + strandat 266.900 kb on - strandat 266.984 kb on + strandat 266.984 kb on + strandat 266.984 kb on + strandat 267.555 kb on - strandat 267.561 kb on + strandat 267.561 kb on + strandat 267.561 kb on + strandat 267.562 kb on - strandat 267.562 kb on - strandat 267.774 kb on + strand, within MPMX19_06698at 267.774 kb on + strand, within MPMX19_06698at 267.775 kb on - strand, within MPMX19_06698at 267.775 kb on - strand, within MPMX19_06698at 267.775 kb on - strand, within MPMX19_06698at 267.825 kb on + strand, within MPMX19_06698at 267.826 kb on - strand, within MPMX19_06698at 267.826 kb on - strand, within MPMX19_06698at 267.826 kb on - strand, within MPMX19_06698at 267.826 kb on - strand, within MPMX19_06698at 267.826 kb on - strand, within MPMX19_06698

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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265,970 + MPMX19_06695 0.83 +0.3
265,970 + MPMX19_06695 0.83 -0.9
265,970 + MPMX19_06695 0.83 -0.2
265,970 + MPMX19_06695 0.83 -0.4
265,970 + MPMX19_06695 0.83 -0.1
265,970 + MPMX19_06695 0.83 -0.4
265,970 + MPMX19_06695 0.83 -0.6
265,970 + MPMX19_06695 0.83 -0.3
265,970 + MPMX19_06695 0.83 +0.8
265,970 + MPMX19_06695 0.83 -0.4
265,971 - MPMX19_06695 0.83 +0.1
265,971 - MPMX19_06695 0.83 +0.3
265,971 - MPMX19_06695 0.83 +0.8
265,971 - MPMX19_06695 0.83 -0.0
265,971 - MPMX19_06695 0.83 +0.1
265,971 - MPMX19_06695 0.83 -0.5
265,971 - MPMX19_06695 0.83 +0.4
265,971 - MPMX19_06695 0.83 -0.9
265,971 - MPMX19_06695 0.83 -0.0
265,971 - MPMX19_06695 0.83 -0.8
265,971 - MPMX19_06695 0.83 -1.6
266,135 + +0.2
266,135 + -1.6
266,135 + +0.0
266,135 + -0.2
266,135 + +0.0
266,135 + -1.8
266,135 + +0.2
266,135 + +0.5
266,135 + +0.8
266,135 + -1.4
266,135 + -0.6
266,135 + +0.2
266,135 + -0.6
266,135 + +0.3
266,135 + -0.5
266,135 + -1.9
266,135 + +0.6
266,135 + -1.3
266,135 + -0.8
266,135 + -0.8
266,136 - +0.7
266,136 - -1.0
266,136 - -0.7
266,136 - +2.0
266,136 - +1.8
266,136 - +0.9
266,136 - -0.6
266,136 - -1.0
266,136 - +0.5
266,136 - -1.6
266,136 - -0.0
266,136 - -0.2
266,136 - -0.6
266,136 - -0.4
266,136 - -0.9
266,136 - -0.4
266,136 - -1.7
266,171 - -0.4
266,171 - -1.7
266,219 + -0.5
266,498 + MPMX19_06696 0.28 -0.6
266,498 + MPMX19_06696 0.28 +0.8
266,498 + MPMX19_06696 0.28 -0.5
266,498 + MPMX19_06696 0.28 +1.0
266,498 + MPMX19_06696 0.28 +0.4
266,499 - MPMX19_06696 0.28 -0.7
266,499 - MPMX19_06696 0.28 -0.4
266,899 + +0.0
266,899 + -1.0
266,899 + -0.4
266,900 - -1.7
266,984 + +0.4
266,984 + -0.4
266,984 + -0.7
267,555 - -0.5
267,561 + +0.3
267,561 + -0.4
267,561 + -0.8
267,562 - -1.0
267,562 - +0.9
267,774 + MPMX19_06698 0.55 +0.3
267,774 + MPMX19_06698 0.55 -1.2
267,775 - MPMX19_06698 0.55 -1.5
267,775 - MPMX19_06698 0.55 +0.8
267,775 - MPMX19_06698 0.55 -1.7
267,825 + MPMX19_06698 0.68 +0.8
267,826 - MPMX19_06698 0.68 -1.2
267,826 - MPMX19_06698 0.68 -0.9
267,826 - MPMX19_06698 0.68 -1.0
267,826 - MPMX19_06698 0.68 -1.3
267,826 - MPMX19_06698 0.68 -0.5

Or see this region's nucleotide sequence