Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06676 and MPMX19_06677 are separated by 258 nucleotides MPMX19_06677 and MPMX19_06678 are separated by 274 nucleotides
MPMX19_06676: MPMX19_06676 - hypothetical protein, at 239,988 to 241,664
_06676
MPMX19_06677: MPMX19_06677 - hypothetical protein, at 241,923 to 242,981
_06677
MPMX19_06678: MPMX19_06678 - hypothetical protein, at 243,256 to 244,239
_06678
Position (kb) 241
242
243 Strain fitness (log2 ratio) -2
-1
0
1
2 at 240.927 kb on + strand, within MPMX19_06676 at 240.927 kb on + strand, within MPMX19_06676 at 240.928 kb on - strand, within MPMX19_06676 at 240.928 kb on - strand, within MPMX19_06676 at 240.928 kb on - strand, within MPMX19_06676 at 240.956 kb on + strand, within MPMX19_06676 at 240.971 kb on + strand, within MPMX19_06676 at 240.971 kb on + strand, within MPMX19_06676 at 240.971 kb on + strand, within MPMX19_06676 at 240.972 kb on - strand, within MPMX19_06676 at 240.972 kb on - strand, within MPMX19_06676 at 240.972 kb on - strand, within MPMX19_06676 at 240.972 kb on - strand, within MPMX19_06676 at 240.972 kb on - strand, within MPMX19_06676 at 240.972 kb on - strand, within MPMX19_06676 at 240.973 kb on + strand, within MPMX19_06676 at 240.973 kb on + strand, within MPMX19_06676 at 240.973 kb on + strand, within MPMX19_06676 at 240.973 kb on + strand, within MPMX19_06676 at 240.973 kb on + strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 241.033 kb on + strand, within MPMX19_06676 at 241.034 kb on - strand, within MPMX19_06676 at 241.034 kb on - strand, within MPMX19_06676 at 241.034 kb on - strand, within MPMX19_06676 at 241.034 kb on - strand, within MPMX19_06676 at 241.079 kb on - strand, within MPMX19_06676 at 241.079 kb on - strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.111 kb on - strand, within MPMX19_06676 at 241.323 kb on + strand, within MPMX19_06676 at 241.323 kb on + strand, within MPMX19_06676 at 241.324 kb on - strand, within MPMX19_06676 at 241.324 kb on - strand, within MPMX19_06676 at 241.324 kb on - strand, within MPMX19_06676 at 241.381 kb on + strand, within MPMX19_06676 at 241.381 kb on + strand, within MPMX19_06676 at 241.381 kb on + strand, within MPMX19_06676 at 241.382 kb on - strand, within MPMX19_06676 at 241.382 kb on - strand, within MPMX19_06676 at 241.382 kb on - strand, within MPMX19_06676 at 241.472 kb on + strand, within MPMX19_06676 at 241.473 kb on - strand, within MPMX19_06676 at 241.504 kb on + strand at 241.504 kb on + strand at 241.504 kb on + strand at 241.504 kb on + strand at 241.504 kb on + strand at 241.504 kb on + strand at 241.505 kb on - strand at 241.505 kb on - strand at 241.585 kb on + strand at 241.585 kb on + strand at 241.585 kb on + strand at 241.585 kb on + strand at 241.585 kb on + strand at 241.585 kb on + strand at 241.585 kb on + strand at 241.585 kb on + strand at 241.585 kb on + strand at 241.586 kb on - strand at 241.586 kb on - strand at 241.586 kb on - strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.696 kb on - strand at 241.696 kb on - strand at 241.696 kb on - strand at 241.696 kb on - strand at 241.696 kb on - strand at 241.714 kb on + strand at 241.714 kb on + strand at 241.714 kb on + strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.772 kb on - strand at 241.908 kb on + strand at 241.908 kb on + strand at 241.924 kb on + strand at 241.924 kb on + strand at 241.924 kb on + strand at 241.924 kb on + strand at 241.924 kb on + strand at 241.924 kb on + strand at 241.924 kb on + strand at 241.924 kb on + strand at 241.925 kb on - strand at 241.925 kb on - strand at 241.925 kb on - strand at 241.925 kb on - strand at 241.925 kb on - strand at 241.957 kb on + strand at 241.958 kb on - strand at 241.958 kb on - strand at 241.958 kb on - strand at 242.316 kb on - strand, within MPMX19_06677 at 242.316 kb on - strand, within MPMX19_06677 at 242.316 kb on - strand, within MPMX19_06677 at 242.666 kb on + strand, within MPMX19_06677 at 242.666 kb on + strand, within MPMX19_06677 at 242.666 kb on + strand, within MPMX19_06677 at 242.666 kb on + strand, within MPMX19_06677 at 242.667 kb on - strand, within MPMX19_06677 at 242.667 kb on - strand, within MPMX19_06677 at 242.987 kb on + strand at 242.991 kb on + strand at 242.998 kb on + strand at 242.999 kb on - strand at 243.271 kb on - strand at 243.271 kb on - strand at 243.277 kb on + strand at 243.278 kb on - strand at 243.343 kb on + strand at 243.344 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 240,927 + MPMX19_06676 0.56 -1.3 240,927 + MPMX19_06676 0.56 -1.2 240,928 - MPMX19_06676 0.56 +0.1 240,928 - MPMX19_06676 0.56 -1.8 240,928 - MPMX19_06676 0.56 -0.4 240,956 + MPMX19_06676 0.58 -0.9 240,971 + MPMX19_06676 0.59 -0.6 240,971 + MPMX19_06676 0.59 +0.6 240,971 + MPMX19_06676 0.59 -0.7 240,972 - MPMX19_06676 0.59 -1.6 240,972 - MPMX19_06676 0.59 -1.0 240,972 - MPMX19_06676 0.59 -2.2 240,972 - MPMX19_06676 0.59 -0.5 240,972 - MPMX19_06676 0.59 +1.5 240,972 - MPMX19_06676 0.59 -0.1 240,973 + MPMX19_06676 0.59 +0.2 240,973 + MPMX19_06676 0.59 -0.2 240,973 + MPMX19_06676 0.59 +1.8 240,973 + MPMX19_06676 0.59 -1.1 240,973 + MPMX19_06676 0.59 -0.6 240,974 - MPMX19_06676 0.59 +0.2 240,974 - MPMX19_06676 0.59 -0.2 240,974 - MPMX19_06676 0.59 +0.6 240,974 - MPMX19_06676 0.59 +0.6 240,974 - MPMX19_06676 0.59 -0.9 240,974 - MPMX19_06676 0.59 -1.8 240,974 - MPMX19_06676 0.59 +1.3 240,974 - MPMX19_06676 0.59 -1.6 240,974 - MPMX19_06676 0.59 +0.2 241,033 + MPMX19_06676 0.62 -1.6 241,034 - MPMX19_06676 0.62 -0.0 241,034 - MPMX19_06676 0.62 +0.2 241,034 - MPMX19_06676 0.62 -0.6 241,034 - MPMX19_06676 0.62 +0.2 241,079 - MPMX19_06676 0.65 -1.8 241,079 - MPMX19_06676 0.65 -1.0 241,086 + MPMX19_06676 0.65 -0.9 241,086 + MPMX19_06676 0.65 +0.1 241,086 + MPMX19_06676 0.65 -0.4 241,086 + MPMX19_06676 0.65 +0.2 241,086 + MPMX19_06676 0.65 -1.1 241,086 + MPMX19_06676 0.65 +0.4 241,086 + MPMX19_06676 0.65 -0.2 241,086 + MPMX19_06676 0.65 -0.2 241,086 + MPMX19_06676 0.65 -1.3 241,086 + MPMX19_06676 0.65 -1.0 241,086 + MPMX19_06676 0.65 -1.0 241,087 - MPMX19_06676 0.66 -2.3 241,087 - MPMX19_06676 0.66 +0.3 241,087 - MPMX19_06676 0.66 -0.4 241,087 - MPMX19_06676 0.66 -0.5 241,087 - MPMX19_06676 0.66 -0.9 241,087 - MPMX19_06676 0.66 -0.4 241,087 - MPMX19_06676 0.66 -0.7 241,087 - MPMX19_06676 0.66 -1.6 241,087 - MPMX19_06676 0.66 -0.1 241,111 - MPMX19_06676 0.67 -0.8 241,323 + MPMX19_06676 0.80 +0.1 241,323 + MPMX19_06676 0.80 -0.9 241,324 - MPMX19_06676 0.80 -1.4 241,324 - MPMX19_06676 0.80 +1.8 241,324 - MPMX19_06676 0.80 -0.9 241,381 + MPMX19_06676 0.83 -1.2 241,381 + MPMX19_06676 0.83 -2.1 241,381 + MPMX19_06676 0.83 -0.3 241,382 - MPMX19_06676 0.83 -0.9 241,382 - MPMX19_06676 0.83 +0.2 241,382 - MPMX19_06676 0.83 +0.8 241,472 + MPMX19_06676 0.88 -2.2 241,473 - MPMX19_06676 0.89 -0.0 241,504 + +0.2 241,504 + -0.6 241,504 + +0.6 241,504 + -1.2 241,504 + -1.7 241,504 + -0.2 241,505 - -1.7 241,505 - +1.2 241,585 + +0.1 241,585 + +0.9 241,585 + -1.1 241,585 + -1.2 241,585 + +0.1 241,585 + +0.4 241,585 + +0.9 241,585 + -0.0 241,585 + +1.2 241,586 - +0.5 241,586 - +0.2 241,586 - +0.2 241,695 + -2.2 241,695 + -0.0 241,695 + -1.6 241,695 + -1.2 241,695 + -1.4 241,695 + -0.0 241,695 + -0.4 241,695 + -0.4 241,695 + -1.7 241,695 + +0.4 241,695 + +0.2 241,696 - +0.3 241,696 - -0.2 241,696 - +0.2 241,696 - -0.2 241,696 - -0.7 241,714 + -0.7 241,714 + -0.4 241,714 + -0.4 241,715 - -1.5 241,715 - -0.7 241,715 - +0.9 241,715 - +0.8 241,715 - -0.9 241,715 - -0.3 241,715 - -0.4 241,715 - +0.3 241,715 - -1.6 241,715 - +0.0 241,772 - +1.5 241,908 + -0.2 241,908 + -1.0 241,924 + -0.7 241,924 + +0.4 241,924 + -0.1 241,924 + -0.2 241,924 + +0.4 241,924 + +1.3 241,924 + +0.1 241,924 + -0.2 241,925 - -1.8 241,925 - -0.3 241,925 - +1.1 241,925 - -0.6 241,925 - +0.1 241,957 + +0.0 241,958 - -0.6 241,958 - -0.3 241,958 - +0.9 242,316 - MPMX19_06677 0.37 -0.4 242,316 - MPMX19_06677 0.37 +0.1 242,316 - MPMX19_06677 0.37 -0.9 242,666 + MPMX19_06677 0.70 -0.7 242,666 + MPMX19_06677 0.70 -1.0 242,666 + MPMX19_06677 0.70 -0.4 242,666 + MPMX19_06677 0.70 +0.8 242,667 - MPMX19_06677 0.70 -1.8 242,667 - MPMX19_06677 0.70 -0.9 242,987 + -0.6 242,991 + +0.0 242,998 + -1.8 242,999 - -0.8 243,271 - -1.4 243,271 - -0.4 243,277 + -0.8 243,278 - -2.2 243,343 + +0.8 243,344 - -0.0
Or see this region's nucleotide sequence