Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06674 and MPMX19_06675 are separated by 320 nucleotides MPMX19_06675 and MPMX19_06676 are separated by 95 nucleotides
MPMX19_06674: MPMX19_06674 - hypothetical protein, at 237,845 to 238,279
_06674
MPMX19_06675: MPMX19_06675 - hypothetical protein, at 238,600 to 239,892
_06675
MPMX19_06676: MPMX19_06676 - hypothetical protein, at 239,988 to 241,664
_06676
Position (kb) 238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 237.686 kb on + strand at 237.687 kb on - strand at 237.782 kb on + strand at 237.782 kb on + strand at 237.782 kb on + strand at 238.277 kb on + strand at 238.277 kb on + strand at 238.277 kb on + strand at 238.277 kb on + strand at 238.278 kb on - strand at 238.278 kb on - strand at 238.278 kb on - strand at 238.278 kb on - strand at 238.355 kb on + strand at 238.355 kb on + strand at 238.355 kb on + strand at 238.363 kb on + strand at 238.363 kb on + strand at 238.364 kb on - strand at 238.364 kb on - strand at 238.364 kb on - strand at 238.364 kb on - strand at 238.364 kb on - strand at 238.520 kb on + strand at 238.521 kb on - strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.645 kb on - strand at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.990 kb on + strand, within MPMX19_06675 at 238.990 kb on + strand, within MPMX19_06675 at 238.990 kb on + strand, within MPMX19_06675 at 239.011 kb on + strand, within MPMX19_06675 at 239.011 kb on + strand, within MPMX19_06675 at 239.012 kb on - strand, within MPMX19_06675 at 239.012 kb on - strand, within MPMX19_06675 at 239.038 kb on + strand, within MPMX19_06675 at 239.038 kb on + strand, within MPMX19_06675 at 239.038 kb on + strand, within MPMX19_06675 at 239.038 kb on + strand, within MPMX19_06675 at 239.038 kb on + strand, within MPMX19_06675 at 239.039 kb on - strand, within MPMX19_06675 at 239.039 kb on - strand, within MPMX19_06675 at 239.039 kb on - strand, within MPMX19_06675 at 239.039 kb on - strand, within MPMX19_06675 at 239.039 kb on - strand, within MPMX19_06675 at 239.149 kb on + strand, within MPMX19_06675 at 239.150 kb on - strand, within MPMX19_06675 at 239.266 kb on + strand, within MPMX19_06675 at 239.275 kb on + strand, within MPMX19_06675 at 239.275 kb on + strand, within MPMX19_06675 at 239.276 kb on - strand, within MPMX19_06675 at 239.276 kb on - strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.527 kb on + strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.528 kb on - strand, within MPMX19_06675 at 239.738 kb on - strand, within MPMX19_06675 at 239.738 kb on - strand, within MPMX19_06675 at 239.738 kb on - strand, within MPMX19_06675 at 239.746 kb on + strand, within MPMX19_06675 at 239.746 kb on + strand, within MPMX19_06675 at 239.746 kb on + strand, within MPMX19_06675 at 239.746 kb on + strand, within MPMX19_06675 at 239.746 kb on + strand, within MPMX19_06675 at 239.747 kb on - strand, within MPMX19_06675 at 239.747 kb on - strand, within MPMX19_06675 at 239.747 kb on - strand, within MPMX19_06675 at 239.747 kb on - strand, within MPMX19_06675 at 239.788 kb on + strand at 239.989 kb on + strand at 239.989 kb on + strand at 239.989 kb on + strand at 239.989 kb on + strand at 239.989 kb on + strand at 239.989 kb on + strand at 239.989 kb on + strand at 239.989 kb on + strand at 239.990 kb on - strand at 239.990 kb on - strand at 239.990 kb on - strand at 239.990 kb on - strand at 239.990 kb on - strand at 239.990 kb on - strand at 239.990 kb on - strand at 240.013 kb on - strand at 240.134 kb on + strand at 240.134 kb on + strand at 240.134 kb on + strand at 240.134 kb on + strand at 240.134 kb on + strand at 240.135 kb on - strand at 240.135 kb on - strand at 240.135 kb on - strand at 240.319 kb on + strand, within MPMX19_06676 at 240.319 kb on + strand, within MPMX19_06676 at 240.319 kb on + strand, within MPMX19_06676 at 240.319 kb on + strand, within MPMX19_06676 at 240.320 kb on - strand, within MPMX19_06676 at 240.320 kb on - strand, within MPMX19_06676 at 240.320 kb on - strand, within MPMX19_06676 at 240.407 kb on + strand, within MPMX19_06676 at 240.407 kb on + strand, within MPMX19_06676 at 240.407 kb on + strand, within MPMX19_06676 at 240.407 kb on + strand, within MPMX19_06676 at 240.407 kb on + strand, within MPMX19_06676 at 240.408 kb on - strand, within MPMX19_06676 at 240.408 kb on - strand, within MPMX19_06676 at 240.408 kb on - strand, within MPMX19_06676 at 240.437 kb on + strand, within MPMX19_06676 at 240.437 kb on + strand, within MPMX19_06676 at 240.437 kb on + strand, within MPMX19_06676 at 240.438 kb on - strand, within MPMX19_06676 at 240.438 kb on - strand, within MPMX19_06676 at 240.438 kb on - strand, within MPMX19_06676 at 240.502 kb on + strand, within MPMX19_06676 at 240.502 kb on + strand, within MPMX19_06676 at 240.502 kb on + strand, within MPMX19_06676 at 240.502 kb on + strand, within MPMX19_06676 at 240.502 kb on + strand, within MPMX19_06676 at 240.502 kb on + strand, within MPMX19_06676 at 240.502 kb on + strand, within MPMX19_06676 at 240.502 kb on + strand, within MPMX19_06676 at 240.503 kb on - strand, within MPMX19_06676 at 240.503 kb on - strand, within MPMX19_06676 at 240.503 kb on - strand, within MPMX19_06676 at 240.544 kb on + strand, within MPMX19_06676 at 240.544 kb on + strand, within MPMX19_06676 at 240.544 kb on + strand, within MPMX19_06676 at 240.545 kb on - strand, within MPMX19_06676 at 240.690 kb on + strand, within MPMX19_06676 at 240.690 kb on + strand, within MPMX19_06676 at 240.690 kb on + strand, within MPMX19_06676 at 240.690 kb on + strand, within MPMX19_06676 at 240.690 kb on + strand, within MPMX19_06676 at 240.691 kb on - strand, within MPMX19_06676 at 240.799 kb on - strand, within MPMX19_06676
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 237,686 + +0.1 237,687 - -2.1 237,782 + -0.0 237,782 + -1.0 237,782 + -1.2 238,277 + -2.1 238,277 + -1.0 238,277 + -1.1 238,277 + +0.0 238,278 - -0.2 238,278 - -0.2 238,278 - -0.1 238,278 - -1.2 238,355 + -1.4 238,355 + -0.3 238,355 + -1.0 238,363 + +0.2 238,363 + -0.8 238,364 - -1.0 238,364 - -1.2 238,364 - +0.2 238,364 - +1.2 238,364 - -2.1 238,520 + +0.0 238,521 - +0.8 238,643 + -0.6 238,643 + +0.2 238,643 + -2.0 238,643 + -1.8 238,643 + -0.2 238,643 + +0.2 238,643 + -1.7 238,643 + +0.4 238,643 + +0.1 238,643 + -0.7 238,643 + +0.8 238,643 + -0.6 238,643 + +0.5 238,643 + -0.4 238,643 + -0.5 238,643 + +0.5 238,643 + -0.6 238,643 + -1.1 238,643 + +0.1 238,643 + +0.8 238,643 + +1.2 238,643 + -1.4 238,643 + -0.1 238,643 + -0.1 238,643 + +0.5 238,643 + +0.4 238,644 - +0.4 238,644 - -1.2 238,644 - -0.1 238,644 - -0.4 238,644 - -2.1 238,644 - -0.3 238,644 - -0.4 238,644 - -0.4 238,644 - -1.3 238,644 - +2.0 238,644 - +0.4 238,644 - -1.4 238,644 - -0.1 238,644 - +0.1 238,644 - +0.3 238,644 - -0.0 238,644 - -0.1 238,644 - +0.3 238,644 - -0.4 238,644 - -1.2 238,644 - -0.5 238,644 - -1.8 238,644 - -3.1 238,644 - -0.8 238,645 - -1.1 238,786 + MPMX19_06675 0.14 -0.2 238,786 + MPMX19_06675 0.14 -0.3 238,786 + MPMX19_06675 0.14 +0.2 238,786 + MPMX19_06675 0.14 +0.6 238,786 + MPMX19_06675 0.14 +0.5 238,786 + MPMX19_06675 0.14 -0.8 238,786 + MPMX19_06675 0.14 -1.0 238,787 - MPMX19_06675 0.14 -0.8 238,787 - MPMX19_06675 0.14 -0.2 238,787 - MPMX19_06675 0.14 -0.8 238,787 - MPMX19_06675 0.14 -0.2 238,787 - MPMX19_06675 0.14 -1.3 238,787 - MPMX19_06675 0.14 -0.7 238,787 - MPMX19_06675 0.14 -0.5 238,787 - MPMX19_06675 0.14 -0.3 238,787 - MPMX19_06675 0.14 +0.2 238,787 - MPMX19_06675 0.14 -0.7 238,990 + MPMX19_06675 0.30 -0.7 238,990 + MPMX19_06675 0.30 -0.7 238,990 + MPMX19_06675 0.30 -0.2 239,011 + MPMX19_06675 0.32 -1.3 239,011 + MPMX19_06675 0.32 -0.9 239,012 - MPMX19_06675 0.32 +1.3 239,012 - MPMX19_06675 0.32 +0.3 239,038 + MPMX19_06675 0.34 +0.4 239,038 + MPMX19_06675 0.34 -0.9 239,038 + MPMX19_06675 0.34 -0.4 239,038 + MPMX19_06675 0.34 -0.2 239,038 + MPMX19_06675 0.34 -0.2 239,039 - MPMX19_06675 0.34 -0.1 239,039 - MPMX19_06675 0.34 -0.1 239,039 - MPMX19_06675 0.34 -2.1 239,039 - MPMX19_06675 0.34 -1.0 239,039 - MPMX19_06675 0.34 +0.3 239,149 + MPMX19_06675 0.42 +0.2 239,150 - MPMX19_06675 0.43 -1.9 239,266 + MPMX19_06675 0.52 -0.0 239,275 + MPMX19_06675 0.52 +0.6 239,275 + MPMX19_06675 0.52 -1.1 239,276 - MPMX19_06675 0.52 -0.6 239,276 - MPMX19_06675 0.52 -1.0 239,527 + MPMX19_06675 0.72 -0.5 239,527 + MPMX19_06675 0.72 -1.1 239,527 + MPMX19_06675 0.72 -0.1 239,527 + MPMX19_06675 0.72 +0.1 239,527 + MPMX19_06675 0.72 +0.4 239,527 + MPMX19_06675 0.72 +0.3 239,527 + MPMX19_06675 0.72 -1.0 239,527 + MPMX19_06675 0.72 -0.2 239,527 + MPMX19_06675 0.72 -1.4 239,527 + MPMX19_06675 0.72 +0.8 239,527 + MPMX19_06675 0.72 -0.2 239,527 + MPMX19_06675 0.72 +0.9 239,527 + MPMX19_06675 0.72 +1.1 239,527 + MPMX19_06675 0.72 -0.8 239,527 + MPMX19_06675 0.72 -1.1 239,527 + MPMX19_06675 0.72 -1.0 239,527 + MPMX19_06675 0.72 -0.2 239,527 + MPMX19_06675 0.72 -0.5 239,527 + MPMX19_06675 0.72 -1.0 239,528 - MPMX19_06675 0.72 +0.0 239,528 - MPMX19_06675 0.72 -0.4 239,528 - MPMX19_06675 0.72 -0.8 239,528 - MPMX19_06675 0.72 -0.9 239,528 - MPMX19_06675 0.72 +0.1 239,528 - MPMX19_06675 0.72 -0.0 239,528 - MPMX19_06675 0.72 -0.2 239,528 - MPMX19_06675 0.72 -0.2 239,528 - MPMX19_06675 0.72 +0.6 239,528 - MPMX19_06675 0.72 -0.7 239,528 - MPMX19_06675 0.72 -0.6 239,528 - MPMX19_06675 0.72 -1.2 239,738 - MPMX19_06675 0.88 +0.4 239,738 - MPMX19_06675 0.88 -1.2 239,738 - MPMX19_06675 0.88 +1.0 239,746 + MPMX19_06675 0.89 -0.5 239,746 + MPMX19_06675 0.89 -1.3 239,746 + MPMX19_06675 0.89 +1.3 239,746 + MPMX19_06675 0.89 +0.7 239,746 + MPMX19_06675 0.89 -0.1 239,747 - MPMX19_06675 0.89 +0.3 239,747 - MPMX19_06675 0.89 -0.3 239,747 - MPMX19_06675 0.89 -1.9 239,747 - MPMX19_06675 0.89 -0.0 239,788 + -0.5 239,989 + +1.0 239,989 + -0.4 239,989 + -0.7 239,989 + -1.7 239,989 + -0.7 239,989 + -0.4 239,989 + -1.0 239,989 + -1.7 239,990 - -0.2 239,990 - +0.1 239,990 - -0.6 239,990 - -0.1 239,990 - +0.9 239,990 - -1.8 239,990 - -0.2 240,013 - +0.3 240,134 + -1.0 240,134 + -1.7 240,134 + +0.6 240,134 + +0.9 240,134 + +0.2 240,135 - -1.6 240,135 - +0.5 240,135 - -1.7 240,319 + MPMX19_06676 0.20 -0.3 240,319 + MPMX19_06676 0.20 -0.9 240,319 + MPMX19_06676 0.20 -0.8 240,319 + MPMX19_06676 0.20 +0.8 240,320 - MPMX19_06676 0.20 -0.7 240,320 - MPMX19_06676 0.20 -2.1 240,320 - MPMX19_06676 0.20 -0.5 240,407 + MPMX19_06676 0.25 +0.2 240,407 + MPMX19_06676 0.25 +0.8 240,407 + MPMX19_06676 0.25 +1.8 240,407 + MPMX19_06676 0.25 -0.2 240,407 + MPMX19_06676 0.25 +0.0 240,408 - MPMX19_06676 0.25 -0.6 240,408 - MPMX19_06676 0.25 -0.5 240,408 - MPMX19_06676 0.25 -0.6 240,437 + MPMX19_06676 0.27 -0.7 240,437 + MPMX19_06676 0.27 -0.3 240,437 + MPMX19_06676 0.27 +0.2 240,438 - MPMX19_06676 0.27 +2.0 240,438 - MPMX19_06676 0.27 -0.2 240,438 - MPMX19_06676 0.27 -0.8 240,502 + MPMX19_06676 0.31 -0.6 240,502 + MPMX19_06676 0.31 -0.6 240,502 + MPMX19_06676 0.31 +0.8 240,502 + MPMX19_06676 0.31 -1.3 240,502 + MPMX19_06676 0.31 +0.4 240,502 + MPMX19_06676 0.31 -0.7 240,502 + MPMX19_06676 0.31 +0.0 240,502 + MPMX19_06676 0.31 +0.3 240,503 - MPMX19_06676 0.31 -1.0 240,503 - MPMX19_06676 0.31 -0.5 240,503 - MPMX19_06676 0.31 +0.4 240,544 + MPMX19_06676 0.33 -1.8 240,544 + MPMX19_06676 0.33 +0.3 240,544 + MPMX19_06676 0.33 -0.6 240,545 - MPMX19_06676 0.33 -0.0 240,690 + MPMX19_06676 0.42 -0.0 240,690 + MPMX19_06676 0.42 -0.1 240,690 + MPMX19_06676 0.42 +1.8 240,690 + MPMX19_06676 0.42 +0.2 240,690 + MPMX19_06676 0.42 -1.0 240,691 - MPMX19_06676 0.42 +0.8 240,799 - MPMX19_06676 0.48 -0.4
Or see this region's nucleotide sequence