Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06667 and MPMX19_06668 are separated by 44 nucleotides MPMX19_06668 and MPMX19_06669 are separated by 182 nucleotides
MPMX19_06667: MPMX19_06667 - Beta-barrel assembly-enhancing protease, at 226,597 to 228,810
_06667
MPMX19_06668: MPMX19_06668 - 2-deoxystreptamine glucosyltransferase, at 228,855 to 230,084
_06668
MPMX19_06669: MPMX19_06669 - hypothetical protein, at 230,267 to 231,907
_06669
Position (kb)
228
229
230
231 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 227.896 kb on + strand, within MPMX19_06667 at 227.896 kb on + strand, within MPMX19_06667 at 227.896 kb on + strand, within MPMX19_06667 at 227.896 kb on + strand, within MPMX19_06667 at 227.896 kb on + strand, within MPMX19_06667 at 227.896 kb on + strand, within MPMX19_06667 at 227.896 kb on + strand, within MPMX19_06667 at 227.897 kb on - strand, within MPMX19_06667 at 227.897 kb on - strand, within MPMX19_06667 at 227.897 kb on - strand, within MPMX19_06667 at 227.897 kb on - strand, within MPMX19_06667 at 227.897 kb on - strand, within MPMX19_06667 at 227.992 kb on + strand, within MPMX19_06667 at 227.992 kb on + strand, within MPMX19_06667 at 227.992 kb on + strand, within MPMX19_06667 at 227.992 kb on + strand, within MPMX19_06667 at 227.992 kb on + strand, within MPMX19_06667 at 227.992 kb on + strand, within MPMX19_06667 at 227.993 kb on - strand, within MPMX19_06667 at 227.993 kb on - strand, within MPMX19_06667 at 227.993 kb on - strand, within MPMX19_06667 at 227.993 kb on - strand, within MPMX19_06667 at 227.993 kb on - strand, within MPMX19_06667 at 228.034 kb on + strand, within MPMX19_06667 at 228.034 kb on + strand, within MPMX19_06667 at 228.034 kb on + strand, within MPMX19_06667 at 228.034 kb on + strand, within MPMX19_06667 at 228.034 kb on + strand, within MPMX19_06667 at 228.034 kb on + strand, within MPMX19_06667 at 228.034 kb on + strand, within MPMX19_06667 at 228.034 kb on + strand, within MPMX19_06667 at 228.034 kb on + strand, within MPMX19_06667 at 228.034 kb on + strand, within MPMX19_06667 at 228.034 kb on + strand, within MPMX19_06667 at 228.034 kb on + strand, within MPMX19_06667 at 228.034 kb on + strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.035 kb on - strand, within MPMX19_06667 at 228.253 kb on + strand, within MPMX19_06667 at 228.253 kb on + strand, within MPMX19_06667 at 228.253 kb on + strand, within MPMX19_06667 at 228.254 kb on - strand, within MPMX19_06667 at 228.254 kb on - strand, within MPMX19_06667 at 228.254 kb on - strand, within MPMX19_06667 at 228.516 kb on + strand, within MPMX19_06667 at 228.516 kb on + strand, within MPMX19_06667 at 228.516 kb on + strand, within MPMX19_06667 at 228.516 kb on + strand, within MPMX19_06667 at 228.516 kb on + strand, within MPMX19_06667 at 228.516 kb on + strand, within MPMX19_06667 at 228.516 kb on + strand, within MPMX19_06667 at 228.517 kb on - strand, within MPMX19_06667 at 228.517 kb on - strand, within MPMX19_06667 at 228.517 kb on - strand, within MPMX19_06667 at 228.517 kb on - strand, within MPMX19_06667 at 228.517 kb on - strand, within MPMX19_06667 at 228.695 kb on - strand at 229.253 kb on + strand, within MPMX19_06668 at 229.253 kb on + strand, within MPMX19_06668 at 229.253 kb on + strand, within MPMX19_06668 at 229.253 kb on + strand, within MPMX19_06668 at 229.254 kb on - strand, within MPMX19_06668 at 229.254 kb on - strand, within MPMX19_06668 at 229.254 kb on - strand, within MPMX19_06668 at 229.660 kb on + strand, within MPMX19_06668 at 229.660 kb on + strand, within MPMX19_06668 at 229.660 kb on + strand, within MPMX19_06668 at 229.660 kb on + strand, within MPMX19_06668 at 229.660 kb on + strand, within MPMX19_06668 at 229.661 kb on - strand, within MPMX19_06668 at 229.661 kb on - strand, within MPMX19_06668 at 229.661 kb on - strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.679 kb on - strand, within MPMX19_06668 at 229.679 kb on - strand, within MPMX19_06668 at 229.679 kb on - strand, within MPMX19_06668 at 229.679 kb on - strand, within MPMX19_06668 at 229.679 kb on - strand, within MPMX19_06668 at 229.679 kb on - strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.780 kb on + strand, within MPMX19_06668 at 229.780 kb on + strand, within MPMX19_06668 at 229.781 kb on - strand, within MPMX19_06668 at 229.781 kb on - strand, within MPMX19_06668 at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.060 kb on - strand at 230.060 kb on - strand at 230.060 kb on - strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.272 kb on - strand at 230.272 kb on - strand at 230.272 kb on - strand at 230.272 kb on - strand at 230.272 kb on - strand at 230.272 kb on - strand at 230.272 kb on - strand at 230.272 kb on - strand at 230.272 kb on - strand at 230.387 kb on + strand at 230.387 kb on + strand at 230.387 kb on + strand at 230.387 kb on + strand at 230.387 kb on + strand at 230.387 kb on + strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.591 kb on + strand, within MPMX19_06669 at 230.591 kb on + strand, within MPMX19_06669 at 230.732 kb on + strand, within MPMX19_06669 at 230.732 kb on + strand, within MPMX19_06669 at 230.732 kb on + strand, within MPMX19_06669 at 230.732 kb on + strand, within MPMX19_06669 at 230.733 kb on - strand, within MPMX19_06669 at 230.733 kb on - strand, within MPMX19_06669 at 230.733 kb on - strand, within MPMX19_06669 at 230.733 kb on - strand, within MPMX19_06669 at 230.837 kb on + strand, within MPMX19_06669 at 230.837 kb on + strand, within MPMX19_06669 at 230.838 kb on - strand, within MPMX19_06669 at 230.838 kb on - strand, within MPMX19_06669 at 230.838 kb on - strand, within MPMX19_06669 at 230.838 kb on - strand, within MPMX19_06669 at 230.999 kb on + strand, within MPMX19_06669 at 230.999 kb on + strand, within MPMX19_06669 at 230.999 kb on + strand, within MPMX19_06669 at 230.999 kb on + strand, within MPMX19_06669 at 230.999 kb on + strand, within MPMX19_06669 at 230.999 kb on + strand, within MPMX19_06669 at 230.999 kb on + strand, within MPMX19_06669 at 231.000 kb on - strand, within MPMX19_06669 at 231.000 kb on - strand, within MPMX19_06669 at 231.000 kb on - strand, within MPMX19_06669 at 231.000 kb on - strand, within MPMX19_06669 at 231.000 kb on - strand, within MPMX19_06669
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 227,896 + MPMX19_06667 0.59 -0.4 227,896 + MPMX19_06667 0.59 +1.2 227,896 + MPMX19_06667 0.59 -0.0 227,896 + MPMX19_06667 0.59 -0.6 227,896 + MPMX19_06667 0.59 -0.2 227,896 + MPMX19_06667 0.59 -0.2 227,896 + MPMX19_06667 0.59 -2.1 227,897 - MPMX19_06667 0.59 -1.6 227,897 - MPMX19_06667 0.59 +0.1 227,897 - MPMX19_06667 0.59 +0.3 227,897 - MPMX19_06667 0.59 -0.6 227,897 - MPMX19_06667 0.59 +0.1 227,992 + MPMX19_06667 0.63 +0.6 227,992 + MPMX19_06667 0.63 -0.9 227,992 + MPMX19_06667 0.63 +0.5 227,992 + MPMX19_06667 0.63 -0.4 227,992 + MPMX19_06667 0.63 -0.3 227,992 + MPMX19_06667 0.63 +0.9 227,993 - MPMX19_06667 0.63 -1.0 227,993 - MPMX19_06667 0.63 -0.4 227,993 - MPMX19_06667 0.63 -0.7 227,993 - MPMX19_06667 0.63 -0.7 227,993 - MPMX19_06667 0.63 -0.1 228,034 + MPMX19_06667 0.65 -0.7 228,034 + MPMX19_06667 0.65 -1.9 228,034 + MPMX19_06667 0.65 -0.4 228,034 + MPMX19_06667 0.65 -0.3 228,034 + MPMX19_06667 0.65 -0.7 228,034 + MPMX19_06667 0.65 -0.3 228,034 + MPMX19_06667 0.65 -0.2 228,034 + MPMX19_06667 0.65 -0.4 228,034 + MPMX19_06667 0.65 -0.5 228,034 + MPMX19_06667 0.65 -2.5 228,034 + MPMX19_06667 0.65 +0.3 228,034 + MPMX19_06667 0.65 -1.7 228,034 + MPMX19_06667 0.65 +1.8 228,035 - MPMX19_06667 0.65 -1.4 228,035 - MPMX19_06667 0.65 -0.4 228,035 - MPMX19_06667 0.65 +0.3 228,035 - MPMX19_06667 0.65 -1.4 228,035 - MPMX19_06667 0.65 -1.2 228,035 - MPMX19_06667 0.65 -1.9 228,035 - MPMX19_06667 0.65 -0.2 228,035 - MPMX19_06667 0.65 +1.5 228,035 - MPMX19_06667 0.65 -0.7 228,035 - MPMX19_06667 0.65 +0.2 228,035 - MPMX19_06667 0.65 +1.0 228,035 - MPMX19_06667 0.65 -0.8 228,035 - MPMX19_06667 0.65 -0.0 228,035 - MPMX19_06667 0.65 -0.7 228,035 - MPMX19_06667 0.65 +0.6 228,035 - MPMX19_06667 0.65 +0.2 228,035 - MPMX19_06667 0.65 -2.0 228,035 - MPMX19_06667 0.65 -0.7 228,253 + MPMX19_06667 0.75 +0.3 228,253 + MPMX19_06667 0.75 +0.1 228,253 + MPMX19_06667 0.75 +0.8 228,254 - MPMX19_06667 0.75 -2.3 228,254 - MPMX19_06667 0.75 -0.6 228,254 - MPMX19_06667 0.75 -0.2 228,516 + MPMX19_06667 0.87 +0.2 228,516 + MPMX19_06667 0.87 +0.8 228,516 + MPMX19_06667 0.87 -0.2 228,516 + MPMX19_06667 0.87 -0.6 228,516 + MPMX19_06667 0.87 -1.2 228,516 + MPMX19_06667 0.87 -1.1 228,516 + MPMX19_06667 0.87 -0.2 228,517 - MPMX19_06667 0.87 -1.4 228,517 - MPMX19_06667 0.87 -0.1 228,517 - MPMX19_06667 0.87 -0.2 228,517 - MPMX19_06667 0.87 -2.2 228,517 - MPMX19_06667 0.87 -0.7 228,695 - -0.2 229,253 + MPMX19_06668 0.32 -0.8 229,253 + MPMX19_06668 0.32 +0.2 229,253 + MPMX19_06668 0.32 +0.0 229,253 + MPMX19_06668 0.32 -0.4 229,254 - MPMX19_06668 0.32 +1.5 229,254 - MPMX19_06668 0.32 -1.2 229,254 - MPMX19_06668 0.32 -0.2 229,660 + MPMX19_06668 0.65 -2.1 229,660 + MPMX19_06668 0.65 +0.9 229,660 + MPMX19_06668 0.65 +0.5 229,660 + MPMX19_06668 0.65 +0.2 229,660 + MPMX19_06668 0.65 +0.3 229,661 - MPMX19_06668 0.66 +0.2 229,661 - MPMX19_06668 0.66 -0.0 229,661 - MPMX19_06668 0.66 -0.1 229,678 + MPMX19_06668 0.67 +1.8 229,678 + MPMX19_06668 0.67 -1.0 229,678 + MPMX19_06668 0.67 +0.2 229,678 + MPMX19_06668 0.67 -0.2 229,678 + MPMX19_06668 0.67 +0.3 229,678 + MPMX19_06668 0.67 +0.2 229,678 + MPMX19_06668 0.67 -0.2 229,678 + MPMX19_06668 0.67 +1.3 229,678 + MPMX19_06668 0.67 +0.2 229,678 + MPMX19_06668 0.67 -0.7 229,678 + MPMX19_06668 0.67 -0.3 229,679 - MPMX19_06668 0.67 +1.3 229,679 - MPMX19_06668 0.67 -0.2 229,679 - MPMX19_06668 0.67 -0.6 229,679 - MPMX19_06668 0.67 +0.5 229,679 - MPMX19_06668 0.67 -1.0 229,679 - MPMX19_06668 0.67 +1.1 229,720 + MPMX19_06668 0.70 +0.9 229,720 + MPMX19_06668 0.70 -0.4 229,720 + MPMX19_06668 0.70 -1.0 229,720 + MPMX19_06668 0.70 -0.2 229,720 + MPMX19_06668 0.70 +0.0 229,720 + MPMX19_06668 0.70 +1.5 229,720 + MPMX19_06668 0.70 +0.0 229,720 + MPMX19_06668 0.70 +0.4 229,720 + MPMX19_06668 0.70 +0.8 229,721 - MPMX19_06668 0.70 +0.2 229,721 - MPMX19_06668 0.70 -0.2 229,721 - MPMX19_06668 0.70 +1.9 229,721 - MPMX19_06668 0.70 -1.6 229,721 - MPMX19_06668 0.70 +0.9 229,721 - MPMX19_06668 0.70 +0.1 229,721 - MPMX19_06668 0.70 +0.9 229,721 - MPMX19_06668 0.70 +0.5 229,721 - MPMX19_06668 0.70 +0.2 229,721 - MPMX19_06668 0.70 -0.4 229,721 - MPMX19_06668 0.70 -0.4 229,721 - MPMX19_06668 0.70 +0.3 229,721 - MPMX19_06668 0.70 -0.8 229,721 - MPMX19_06668 0.70 -0.3 229,721 - MPMX19_06668 0.70 +0.3 229,780 + MPMX19_06668 0.75 -0.9 229,780 + MPMX19_06668 0.75 -0.2 229,781 - MPMX19_06668 0.75 -0.5 229,781 - MPMX19_06668 0.75 -1.6 230,059 + +0.8 230,059 + +0.9 230,059 + +0.2 230,059 + -0.2 230,059 + +0.4 230,059 + -2.4 230,059 + +0.2 230,059 + +0.1 230,059 + +0.2 230,059 + -0.8 230,059 + -0.4 230,059 + -0.3 230,060 - +0.3 230,060 - +0.1 230,060 - +0.3 230,271 + +0.2 230,271 + -0.0 230,271 + +0.1 230,271 + -0.7 230,271 + +0.2 230,271 + -0.9 230,271 + -1.2 230,271 + +0.1 230,271 + -0.6 230,271 + +0.7 230,271 + -0.6 230,272 - +0.3 230,272 - -0.3 230,272 - -1.7 230,272 - -1.4 230,272 - -0.3 230,272 - -0.6 230,272 - +1.3 230,272 - -0.2 230,272 - -0.4 230,387 + -1.2 230,387 + +0.8 230,387 + -0.7 230,387 + -0.7 230,387 + -1.2 230,387 + -0.1 230,388 - -0.3 230,388 - -0.2 230,388 - +0.2 230,388 - +0.7 230,388 - -0.0 230,388 - -0.2 230,388 - -2.0 230,388 - +0.2 230,388 - +1.3 230,388 - -0.2 230,591 + MPMX19_06669 0.20 -0.8 230,591 + MPMX19_06669 0.20 +0.2 230,732 + MPMX19_06669 0.28 -0.1 230,732 + MPMX19_06669 0.28 -2.2 230,732 + MPMX19_06669 0.28 +0.2 230,732 + MPMX19_06669 0.28 -0.4 230,733 - MPMX19_06669 0.28 -0.7 230,733 - MPMX19_06669 0.28 -0.9 230,733 - MPMX19_06669 0.28 -1.4 230,733 - MPMX19_06669 0.28 -1.0 230,837 + MPMX19_06669 0.35 +1.1 230,837 + MPMX19_06669 0.35 -0.1 230,838 - MPMX19_06669 0.35 +0.2 230,838 - MPMX19_06669 0.35 -0.2 230,838 - MPMX19_06669 0.35 -2.8 230,838 - MPMX19_06669 0.35 +0.2 230,999 + MPMX19_06669 0.45 -1.0 230,999 + MPMX19_06669 0.45 +0.4 230,999 + MPMX19_06669 0.45 -0.1 230,999 + MPMX19_06669 0.45 +0.1 230,999 + MPMX19_06669 0.45 -1.4 230,999 + MPMX19_06669 0.45 -1.4 230,999 + MPMX19_06669 0.45 +0.2 231,000 - MPMX19_06669 0.45 +2.1 231,000 - MPMX19_06669 0.45 -0.4 231,000 - MPMX19_06669 0.45 +0.2 231,000 - MPMX19_06669 0.45 -0.3 231,000 - MPMX19_06669 0.45 -1.5
Or see this region's nucleotide sequence