Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06537

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06536 and MPMX19_06537 are separated by 140 nucleotidesMPMX19_06537 and MPMX19_06538 are separated by 144 nucleotidesMPMX19_06538 and MPMX19_06539 are separated by 29 nucleotides MPMX19_06536: MPMX19_06536 - Inner membrane amino-acid ABC transporter permease protein YhdY, at 323,992 to 324,927 _06536 MPMX19_06537: MPMX19_06537 - NADH-dependent FMN reductase SfnF, at 325,068 to 325,625 _06537 MPMX19_06538: MPMX19_06538 - hypothetical protein, at 325,770 to 325,943 _06538 MPMX19_06539: MPMX19_06539 - hypothetical protein, at 325,973 to 326,263 _06539 Position (kb) 325 326Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 324.103 kb on + strand, within MPMX19_06536at 324.103 kb on + strand, within MPMX19_06536at 324.103 kb on + strand, within MPMX19_06536at 324.103 kb on + strand, within MPMX19_06536at 324.103 kb on + strand, within MPMX19_06536at 324.103 kb on + strand, within MPMX19_06536at 324.103 kb on + strand, within MPMX19_06536at 324.103 kb on + strand, within MPMX19_06536at 324.103 kb on + strand, within MPMX19_06536at 324.121 kb on + strand, within MPMX19_06536at 324.121 kb on + strand, within MPMX19_06536at 324.572 kb on - strand, within MPMX19_06536at 324.622 kb on + strand, within MPMX19_06536at 324.622 kb on + strand, within MPMX19_06536at 324.622 kb on + strand, within MPMX19_06536at 324.622 kb on + strand, within MPMX19_06536at 324.829 kb on + strand, within MPMX19_06536at 324.829 kb on + strand, within MPMX19_06536at 324.829 kb on + strand, within MPMX19_06536at 324.829 kb on + strand, within MPMX19_06536at 324.829 kb on + strand, within MPMX19_06536at 324.829 kb on + strand, within MPMX19_06536at 324.830 kb on - strand, within MPMX19_06536at 324.830 kb on - strand, within MPMX19_06536at 324.830 kb on - strand, within MPMX19_06536at 324.830 kb on - strand, within MPMX19_06536at 324.830 kb on - strand, within MPMX19_06536at 324.830 kb on - strand, within MPMX19_06536at 324.830 kb on - strand, within MPMX19_06536at 324.830 kb on - strand, within MPMX19_06536at 324.862 kb on + strandat 324.862 kb on + strandat 324.862 kb on + strandat 324.863 kb on - strandat 325.040 kb on + strandat 325.040 kb on + strandat 325.040 kb on + strandat 325.040 kb on + strandat 325.040 kb on + strandat 325.041 kb on - strandat 325.041 kb on - strandat 325.041 kb on - strandat 325.041 kb on - strandat 325.041 kb on - strandat 325.041 kb on - strandat 325.041 kb on - strandat 325.308 kb on + strand, within MPMX19_06537at 325.308 kb on + strand, within MPMX19_06537at 325.308 kb on + strand, within MPMX19_06537at 325.309 kb on - strand, within MPMX19_06537at 325.309 kb on - strand, within MPMX19_06537at 325.309 kb on - strand, within MPMX19_06537at 325.309 kb on - strand, within MPMX19_06537at 325.309 kb on - strand, within MPMX19_06537at 325.309 kb on - strand, within MPMX19_06537at 325.320 kb on + strand, within MPMX19_06537at 325.320 kb on + strand, within MPMX19_06537at 325.320 kb on + strand, within MPMX19_06537at 325.320 kb on + strand, within MPMX19_06537at 325.321 kb on - strand, within MPMX19_06537at 325.321 kb on - strand, within MPMX19_06537at 325.321 kb on - strand, within MPMX19_06537at 325.321 kb on - strand, within MPMX19_06537at 325.359 kb on + strand, within MPMX19_06537at 325.390 kb on + strand, within MPMX19_06537at 325.474 kb on + strand, within MPMX19_06537at 325.475 kb on - strand, within MPMX19_06537at 325.475 kb on - strand, within MPMX19_06537at 325.475 kb on - strand, within MPMX19_06537at 325.491 kb on + strand, within MPMX19_06537at 325.491 kb on + strand, within MPMX19_06537at 325.491 kb on + strand, within MPMX19_06537at 325.491 kb on + strand, within MPMX19_06537at 325.491 kb on + strand, within MPMX19_06537at 325.492 kb on - strand, within MPMX19_06537at 325.492 kb on - strand, within MPMX19_06537at 325.492 kb on - strand, within MPMX19_06537at 325.623 kb on + strandat 325.623 kb on + strandat 325.624 kb on - strandat 325.624 kb on - strandat 325.695 kb on - strandat 325.717 kb on - strandat 325.722 kb on + strandat 325.722 kb on + strandat 325.722 kb on + strandat 325.723 kb on - strandat 325.784 kb on + strandat 325.784 kb on + strandat 325.784 kb on + strandat 325.785 kb on - strandat 325.785 kb on - strandat 325.785 kb on - strandat 325.785 kb on - strandat 325.937 kb on + strandat 325.938 kb on - strandat 326.093 kb on + strand, within MPMX19_06539at 326.093 kb on + strand, within MPMX19_06539at 326.094 kb on - strand, within MPMX19_06539at 326.220 kb on - strand, within MPMX19_06539at 326.266 kb on - strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.395 kb on - strandat 326.395 kb on - strandat 326.395 kb on - strandat 326.395 kb on - strandat 326.529 kb on - strandat 326.529 kb on - strandat 326.546 kb on + strandat 326.610 kb on + strandat 326.611 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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324,103 + MPMX19_06536 0.12 -0.1
324,103 + MPMX19_06536 0.12 -0.3
324,103 + MPMX19_06536 0.12 +0.5
324,103 + MPMX19_06536 0.12 -0.5
324,103 + MPMX19_06536 0.12 -1.5
324,103 + MPMX19_06536 0.12 -0.9
324,103 + MPMX19_06536 0.12 -0.4
324,103 + MPMX19_06536 0.12 +0.2
324,103 + MPMX19_06536 0.12 +0.5
324,121 + MPMX19_06536 0.14 +0.7
324,121 + MPMX19_06536 0.14 -1.1
324,572 - MPMX19_06536 0.62 -1.2
324,622 + MPMX19_06536 0.67 -1.4
324,622 + MPMX19_06536 0.67 +0.5
324,622 + MPMX19_06536 0.67 -1.2
324,622 + MPMX19_06536 0.67 -0.9
324,829 + MPMX19_06536 0.89 -1.0
324,829 + MPMX19_06536 0.89 -1.5
324,829 + MPMX19_06536 0.89 -1.2
324,829 + MPMX19_06536 0.89 -1.7
324,829 + MPMX19_06536 0.89 -1.7
324,829 + MPMX19_06536 0.89 -0.8
324,830 - MPMX19_06536 0.90 -0.9
324,830 - MPMX19_06536 0.90 -0.1
324,830 - MPMX19_06536 0.90 -0.2
324,830 - MPMX19_06536 0.90 +1.0
324,830 - MPMX19_06536 0.90 +0.1
324,830 - MPMX19_06536 0.90 -0.1
324,830 - MPMX19_06536 0.90 +0.9
324,830 - MPMX19_06536 0.90 -1.2
324,862 + +0.3
324,862 + -1.7
324,862 + -0.2
324,863 - -0.1
325,040 + -0.3
325,040 + -0.3
325,040 + +0.3
325,040 + +0.2
325,040 + -0.2
325,041 - +0.2
325,041 - +0.5
325,041 - -0.2
325,041 - -0.4
325,041 - -0.9
325,041 - -3.1
325,041 - +0.9
325,308 + MPMX19_06537 0.43 +2.9
325,308 + MPMX19_06537 0.43 +0.5
325,308 + MPMX19_06537 0.43 -0.8
325,309 - MPMX19_06537 0.43 +2.3
325,309 - MPMX19_06537 0.43 -0.1
325,309 - MPMX19_06537 0.43 +0.3
325,309 - MPMX19_06537 0.43 -1.7
325,309 - MPMX19_06537 0.43 -0.7
325,309 - MPMX19_06537 0.43 -0.7
325,320 + MPMX19_06537 0.45 -1.2
325,320 + MPMX19_06537 0.45 +0.8
325,320 + MPMX19_06537 0.45 -0.1
325,320 + MPMX19_06537 0.45 -0.1
325,321 - MPMX19_06537 0.45 +1.6
325,321 - MPMX19_06537 0.45 +0.5
325,321 - MPMX19_06537 0.45 +0.9
325,321 - MPMX19_06537 0.45 -0.3
325,359 + MPMX19_06537 0.52 +2.2
325,390 + MPMX19_06537 0.58 -0.2
325,474 + MPMX19_06537 0.73 +0.2
325,475 - MPMX19_06537 0.73 -1.4
325,475 - MPMX19_06537 0.73 +0.9
325,475 - MPMX19_06537 0.73 -1.3
325,491 + MPMX19_06537 0.76 -1.8
325,491 + MPMX19_06537 0.76 +0.1
325,491 + MPMX19_06537 0.76 +2.2
325,491 + MPMX19_06537 0.76 +1.1
325,491 + MPMX19_06537 0.76 +0.1
325,492 - MPMX19_06537 0.76 +0.2
325,492 - MPMX19_06537 0.76 +0.8
325,492 - MPMX19_06537 0.76 +1.1
325,623 + +0.3
325,623 + -1.4
325,624 - +0.6
325,624 - +0.2
325,695 - +1.9
325,717 - -2.3
325,722 + +0.9
325,722 + -0.5
325,722 + -0.3
325,723 - -0.4
325,784 + -2.0
325,784 + +1.2
325,784 + -0.1
325,785 - -1.1
325,785 - +2.8
325,785 - -1.2
325,785 - -0.6
325,937 + -0.9
325,938 - -0.5
326,093 + MPMX19_06539 0.41 -1.8
326,093 + MPMX19_06539 0.41 +0.3
326,094 - MPMX19_06539 0.42 +1.1
326,220 - MPMX19_06539 0.85 -1.2
326,266 - -0.9
326,394 + -1.4
326,394 + +0.2
326,394 + -1.2
326,394 + -0.5
326,394 + -1.6
326,394 + -1.8
326,394 + -0.0
326,394 + -0.3
326,394 + -1.7
326,395 - -0.9
326,395 - +0.2
326,395 - -1.9
326,395 - +0.6
326,529 - +0.2
326,529 - +1.0
326,546 + +0.3
326,610 + +0.4
326,611 - +0.1

Or see this region's nucleotide sequence