Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06530

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06528 and MPMX19_06529 are separated by 37 nucleotidesMPMX19_06529 and MPMX19_06530 overlap by 4 nucleotidesMPMX19_06530 and MPMX19_06531 are separated by 260 nucleotides MPMX19_06528: MPMX19_06528 - hypothetical protein, at 315,222 to 316,268 _06528 MPMX19_06529: MPMX19_06529 - Choline trimethylamine-lyase activating enzyme, at 316,306 to 316,647 _06529 MPMX19_06530: MPMX19_06530 - hypothetical protein, at 316,644 to 318,299 _06530 MPMX19_06531: MPMX19_06531 - O-acetyl-L-homoserine sulfhydrylase, at 318,560 to 319,855 _06531 Position (kb) 316 317 318 319Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 315.776 kb on - strand, within MPMX19_06528at 315.776 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.901 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 316.193 kb on + strandat 316.194 kb on - strandat 316.194 kb on - strandat 316.194 kb on - strandat 316.358 kb on + strand, within MPMX19_06529at 316.359 kb on - strand, within MPMX19_06529at 316.840 kb on + strand, within MPMX19_06530at 316.841 kb on - strand, within MPMX19_06530at 316.841 kb on - strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 317.000 kb on - strand, within MPMX19_06530at 317.609 kb on - strand, within MPMX19_06530at 317.609 kb on - strand, within MPMX19_06530at 317.609 kb on - strand, within MPMX19_06530at 317.894 kb on + strand, within MPMX19_06530at 317.894 kb on + strand, within MPMX19_06530at 317.894 kb on + strand, within MPMX19_06530at 317.894 kb on + strand, within MPMX19_06530at 317.894 kb on + strand, within MPMX19_06530at 317.894 kb on + strand, within MPMX19_06530at 318.097 kb on + strand, within MPMX19_06530at 318.097 kb on + strand, within MPMX19_06530at 318.097 kb on + strand, within MPMX19_06530at 318.097 kb on + strand, within MPMX19_06530at 318.098 kb on - strand, within MPMX19_06530at 318.098 kb on - strand, within MPMX19_06530at 318.098 kb on - strand, within MPMX19_06530at 318.098 kb on - strand, within MPMX19_06530at 318.098 kb on - strand, within MPMX19_06530at 318.098 kb on - strand, within MPMX19_06530at 318.098 kb on - strand, within MPMX19_06530at 318.098 kb on - strand, within MPMX19_06530at 318.228 kb on + strandat 318.366 kb on + strandat 318.437 kb on + strandat 318.561 kb on + strandat 318.562 kb on - strandat 318.562 kb on - strandat 318.636 kb on + strandat 318.636 kb on + strandat 318.636 kb on + strandat 318.636 kb on + strandat 318.636 kb on + strandat 318.636 kb on + strandat 318.747 kb on + strand, within MPMX19_06531at 318.747 kb on + strand, within MPMX19_06531at 318.747 kb on + strand, within MPMX19_06531at 318.747 kb on + strand, within MPMX19_06531at 318.825 kb on + strand, within MPMX19_06531at 318.825 kb on + strand, within MPMX19_06531at 318.825 kb on + strand, within MPMX19_06531at 318.826 kb on - strand, within MPMX19_06531at 318.840 kb on + strand, within MPMX19_06531at 318.840 kb on + strand, within MPMX19_06531at 318.841 kb on - strand, within MPMX19_06531at 318.841 kb on - strand, within MPMX19_06531at 318.841 kb on - strand, within MPMX19_06531at 318.841 kb on - strand, within MPMX19_06531at 318.841 kb on - strand, within MPMX19_06531at 318.922 kb on - strand, within MPMX19_06531at 318.933 kb on - strand, within MPMX19_06531at 318.933 kb on - strand, within MPMX19_06531at 318.933 kb on - strand, within MPMX19_06531at 318.933 kb on - strand, within MPMX19_06531at 319.066 kb on - strand, within MPMX19_06531at 319.066 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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315,776 - MPMX19_06528 0.53 -0.5
315,776 - MPMX19_06528 0.53 -2.2
315,789 - MPMX19_06528 0.54 -1.8
315,789 - MPMX19_06528 0.54 -0.4
315,789 - MPMX19_06528 0.54 +0.5
315,789 - MPMX19_06528 0.54 -1.1
315,789 - MPMX19_06528 0.54 -1.0
315,789 - MPMX19_06528 0.54 -0.1
315,789 - MPMX19_06528 0.54 -1.8
315,789 - MPMX19_06528 0.54 -0.1
315,789 - MPMX19_06528 0.54 -1.5
315,789 - MPMX19_06528 0.54 +0.8
315,789 - MPMX19_06528 0.54 -0.7
315,789 - MPMX19_06528 0.54 -0.1
315,789 - MPMX19_06528 0.54 +0.9
315,789 - MPMX19_06528 0.54 +0.9
315,789 - MPMX19_06528 0.54 +1.6
315,789 - MPMX19_06528 0.54 -0.1
315,789 - MPMX19_06528 0.54 -1.7
315,789 - MPMX19_06528 0.54 -0.5
315,789 - MPMX19_06528 0.54 +0.1
315,789 - MPMX19_06528 0.54 -1.5
315,789 - MPMX19_06528 0.54 -1.1
315,789 - MPMX19_06528 0.54 +2.5
315,789 - MPMX19_06528 0.54 -1.0
315,789 - MPMX19_06528 0.54 +0.1
315,789 - MPMX19_06528 0.54 +0.3
315,789 - MPMX19_06528 0.54 -0.1
315,789 - MPMX19_06528 0.54 -0.1
315,789 - MPMX19_06528 0.54 +1.2
315,789 - MPMX19_06528 0.54 -1.1
315,789 - MPMX19_06528 0.54 -0.9
315,789 - MPMX19_06528 0.54 -0.2
315,789 - MPMX19_06528 0.54 -2.3
315,789 - MPMX19_06528 0.54 -0.6
315,791 - MPMX19_06528 0.54 +0.1
315,791 - MPMX19_06528 0.54 -0.3
315,791 - MPMX19_06528 0.54 +0.7
315,791 - MPMX19_06528 0.54 -0.9
315,791 - MPMX19_06528 0.54 -1.1
315,791 - MPMX19_06528 0.54 -0.9
315,791 - MPMX19_06528 0.54 +0.6
315,791 - MPMX19_06528 0.54 +1.0
315,791 - MPMX19_06528 0.54 -0.0
315,791 - MPMX19_06528 0.54 -1.4
315,791 - MPMX19_06528 0.54 -0.1
315,791 - MPMX19_06528 0.54 -0.7
315,901 + MPMX19_06528 0.65 +0.1
315,910 + MPMX19_06528 0.66 +0.4
315,910 + MPMX19_06528 0.66 -1.1
315,910 + MPMX19_06528 0.66 -0.6
315,910 + MPMX19_06528 0.66 -0.7
315,910 + MPMX19_06528 0.66 -0.5
315,910 + MPMX19_06528 0.66 -0.5
315,910 + MPMX19_06528 0.66 -0.9
315,910 + MPMX19_06528 0.66 -0.5
316,193 + -0.3
316,194 - -0.1
316,194 - +0.4
316,194 - -0.8
316,358 + MPMX19_06529 0.15 +0.8
316,359 - MPMX19_06529 0.15 -0.2
316,840 + MPMX19_06530 0.12 -0.7
316,841 - MPMX19_06530 0.12 -0.4
316,841 - MPMX19_06530 0.12 -2.5
316,987 + MPMX19_06530 0.21 -0.9
316,987 + MPMX19_06530 0.21 -0.0
316,987 + MPMX19_06530 0.21 +1.2
316,987 + MPMX19_06530 0.21 +0.3
316,987 + MPMX19_06530 0.21 +0.5
316,987 + MPMX19_06530 0.21 -2.7
316,987 + MPMX19_06530 0.21 -0.5
316,987 + MPMX19_06530 0.21 +1.2
316,987 + MPMX19_06530 0.21 -0.9
316,988 - MPMX19_06530 0.21 -1.2
316,988 - MPMX19_06530 0.21 -0.3
316,988 - MPMX19_06530 0.21 -0.3
316,988 - MPMX19_06530 0.21 +0.2
316,988 - MPMX19_06530 0.21 -0.0
316,988 - MPMX19_06530 0.21 +0.0
316,988 - MPMX19_06530 0.21 +0.0
317,000 - MPMX19_06530 0.21 +0.5
317,609 - MPMX19_06530 0.58 +0.2
317,609 - MPMX19_06530 0.58 -0.7
317,609 - MPMX19_06530 0.58 -0.6
317,894 + MPMX19_06530 0.75 +0.8
317,894 + MPMX19_06530 0.75 -0.4
317,894 + MPMX19_06530 0.75 +0.7
317,894 + MPMX19_06530 0.75 -2.1
317,894 + MPMX19_06530 0.75 +1.7
317,894 + MPMX19_06530 0.75 -1.1
318,097 + MPMX19_06530 0.88 -0.1
318,097 + MPMX19_06530 0.88 +0.9
318,097 + MPMX19_06530 0.88 -1.2
318,097 + MPMX19_06530 0.88 -0.4
318,098 - MPMX19_06530 0.88 -0.9
318,098 - MPMX19_06530 0.88 +0.5
318,098 - MPMX19_06530 0.88 -1.7
318,098 - MPMX19_06530 0.88 -1.2
318,098 - MPMX19_06530 0.88 -0.2
318,098 - MPMX19_06530 0.88 -1.2
318,098 - MPMX19_06530 0.88 -1.4
318,098 - MPMX19_06530 0.88 -2.0
318,228 + -1.8
318,366 + +1.5
318,437 + -0.7
318,561 + +0.1
318,562 - +0.3
318,562 - +0.3
318,636 + -0.4
318,636 + +0.3
318,636 + -0.7
318,636 + -2.9
318,636 + -0.5
318,636 + +1.9
318,747 + MPMX19_06531 0.14 -0.1
318,747 + MPMX19_06531 0.14 -0.9
318,747 + MPMX19_06531 0.14 -0.7
318,747 + MPMX19_06531 0.14 -0.9
318,825 + MPMX19_06531 0.20 +1.7
318,825 + MPMX19_06531 0.20 -0.6
318,825 + MPMX19_06531 0.20 +0.3
318,826 - MPMX19_06531 0.21 -0.9
318,840 + MPMX19_06531 0.22 +0.3
318,840 + MPMX19_06531 0.22 -1.2
318,841 - MPMX19_06531 0.22 -1.9
318,841 - MPMX19_06531 0.22 +0.3
318,841 - MPMX19_06531 0.22 -1.4
318,841 - MPMX19_06531 0.22 -0.4
318,841 - MPMX19_06531 0.22 +0.1
318,922 - MPMX19_06531 0.28 -1.9
318,933 - MPMX19_06531 0.29 +1.1
318,933 - MPMX19_06531 0.29 -0.4
318,933 - MPMX19_06531 0.29 -0.5
318,933 - MPMX19_06531 0.29 -1.3
319,066 - MPMX19_06531 0.39 -1.2
319,066 - MPMX19_06531 0.39 -1.8
319,117 - MPMX19_06531 0.43 -2.3
319,117 - MPMX19_06531 0.43 +0.9
319,117 - MPMX19_06531 0.43 -0.5
319,117 - MPMX19_06531 0.43 +0.9
319,117 - MPMX19_06531 0.43 -1.0
319,117 - MPMX19_06531 0.43 -0.3
319,117 - MPMX19_06531 0.43 -1.9
319,117 - MPMX19_06531 0.43 -1.4
319,117 - MPMX19_06531 0.43 +1.9
319,117 - MPMX19_06531 0.43 -1.2
319,117 - MPMX19_06531 0.43 +0.1
319,228 - MPMX19_06531 0.52 -0.5
319,228 - MPMX19_06531 0.52 +0.9
319,228 - MPMX19_06531 0.52 +0.4
319,228 - MPMX19_06531 0.52 -0.1
319,228 - MPMX19_06531 0.52 +0.6
319,228 - MPMX19_06531 0.52 -1.2
319,228 - MPMX19_06531 0.52 -1.4
319,228 - MPMX19_06531 0.52 +0.9

Or see this region's nucleotide sequence