Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06506

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06505 and MPMX19_06506 overlap by 4 nucleotidesMPMX19_06506 and MPMX19_06507 are separated by 29 nucleotides MPMX19_06505: MPMX19_06505 - hypothetical protein, at 289,004 to 290,521 _06505 MPMX19_06506: MPMX19_06506 - hypothetical protein, at 290,518 to 290,865 _06506 MPMX19_06507: MPMX19_06507 - hypothetical protein, at 290,895 to 291,938 _06507 Position (kb) 290 291Strain fitness (log2 ratio) -2 -1 0 1 2 3at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 290.686 kb on + strand, within MPMX19_06506at 290.686 kb on + strand, within MPMX19_06506at 290.686 kb on + strand, within MPMX19_06506at 290.686 kb on + strand, within MPMX19_06506at 290.686 kb on + strand, within MPMX19_06506at 290.686 kb on + strand, within MPMX19_06506at 290.762 kb on - strand, within MPMX19_06506at 291.126 kb on + strand, within MPMX19_06507at 291.126 kb on + strand, within MPMX19_06507at 291.126 kb on + strand, within MPMX19_06507at 291.126 kb on + strand, within MPMX19_06507at 291.127 kb on - strand, within MPMX19_06507at 291.127 kb on - strand, within MPMX19_06507at 291.127 kb on - strand, within MPMX19_06507at 291.127 kb on - strand, within MPMX19_06507at 291.384 kb on + strand, within MPMX19_06507at 291.384 kb on + strand, within MPMX19_06507at 291.384 kb on + strand, within MPMX19_06507at 291.384 kb on + strand, within MPMX19_06507at 291.517 kb on - strand, within MPMX19_06507at 291.517 kb on - strand, within MPMX19_06507at 291.517 kb on - strand, within MPMX19_06507at 291.517 kb on - strand, within MPMX19_06507at 291.699 kb on + strand, within MPMX19_06507at 291.699 kb on + strand, within MPMX19_06507at 291.699 kb on + strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.832 kb on - strand, within MPMX19_06507at 291.832 kb on - strand, within MPMX19_06507at 291.832 kb on - strand, within MPMX19_06507at 291.832 kb on - strand, within MPMX19_06507

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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289,619 + MPMX19_06505 0.41 +0.3
289,619 + MPMX19_06505 0.41 -0.1
289,619 + MPMX19_06505 0.41 -0.1
289,619 + MPMX19_06505 0.41 -2.5
289,619 + MPMX19_06505 0.41 -0.8
289,619 + MPMX19_06505 0.41 +0.2
289,619 + MPMX19_06505 0.41 -0.8
289,619 + MPMX19_06505 0.41 -0.4
289,619 + MPMX19_06505 0.41 -0.5
289,619 + MPMX19_06505 0.41 -0.6
289,619 + MPMX19_06505 0.41 -1.0
289,622 + MPMX19_06505 0.41 -1.6
289,622 + MPMX19_06505 0.41 +3.2
289,622 + MPMX19_06505 0.41 +0.7
289,622 + MPMX19_06505 0.41 -0.9
289,622 + MPMX19_06505 0.41 -1.0
289,622 + MPMX19_06505 0.41 -1.9
290,686 + MPMX19_06506 0.48 +0.3
290,686 + MPMX19_06506 0.48 +0.2
290,686 + MPMX19_06506 0.48 +1.3
290,686 + MPMX19_06506 0.48 +0.1
290,686 + MPMX19_06506 0.48 -0.0
290,686 + MPMX19_06506 0.48 +0.6
290,762 - MPMX19_06506 0.70 -0.4
291,126 + MPMX19_06507 0.22 +1.1
291,126 + MPMX19_06507 0.22 -1.2
291,126 + MPMX19_06507 0.22 -1.8
291,126 + MPMX19_06507 0.22 -0.5
291,127 - MPMX19_06507 0.22 +0.3
291,127 - MPMX19_06507 0.22 -0.7
291,127 - MPMX19_06507 0.22 +0.7
291,127 - MPMX19_06507 0.22 -0.2
291,384 + MPMX19_06507 0.47 +0.2
291,384 + MPMX19_06507 0.47 +0.8
291,384 + MPMX19_06507 0.47 +0.2
291,384 + MPMX19_06507 0.47 -1.2
291,517 - MPMX19_06507 0.60 +0.2
291,517 - MPMX19_06507 0.60 +0.2
291,517 - MPMX19_06507 0.60 +0.2
291,517 - MPMX19_06507 0.60 -1.0
291,699 + MPMX19_06507 0.77 -1.1
291,699 + MPMX19_06507 0.77 -1.5
291,699 + MPMX19_06507 0.77 +0.2
291,700 - MPMX19_06507 0.77 +0.2
291,700 - MPMX19_06507 0.77 -0.9
291,700 - MPMX19_06507 0.77 +0.9
291,700 - MPMX19_06507 0.77 +0.7
291,700 - MPMX19_06507 0.77 +0.1
291,700 - MPMX19_06507 0.77 +0.4
291,700 - MPMX19_06507 0.77 -0.4
291,700 - MPMX19_06507 0.77 +0.4
291,700 - MPMX19_06507 0.77 -1.1
291,700 - MPMX19_06507 0.77 +0.4
291,700 - MPMX19_06507 0.77 -1.2
291,832 - MPMX19_06507 0.90 -0.3
291,832 - MPMX19_06507 0.90 -1.1
291,832 - MPMX19_06507 0.90 +0.3
291,832 - MPMX19_06507 0.90 -1.6

Or see this region's nucleotide sequence