Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06502 and MPMX19_06503 are separated by 73 nucleotides MPMX19_06503 and MPMX19_06504 are separated by 294 nucleotides MPMX19_06504 and MPMX19_06505 are separated by 33 nucleotides
MPMX19_06502: MPMX19_06502 - 60 kDa chaperonin 1, at 286,549 to 288,180
_06502
MPMX19_06503: MPMX19_06503 - 10 kDa chaperonin 5, at 288,254 to 288,547
_06503
MPMX19_06504: MPMX19_06504 - hypothetical protein, at 288,842 to 288,970
_06504
MPMX19_06505: MPMX19_06505 - hypothetical protein, at 289,004 to 290,521
_06505
Position (kb) 288
289 Strain fitness (log2 ratio) -2
-1
0
1 at 287.525 kb on + strand, within MPMX19_06502 at 287.525 kb on + strand, within MPMX19_06502 at 287.525 kb on + strand, within MPMX19_06502 at 287.525 kb on + strand, within MPMX19_06502 at 287.525 kb on + strand, within MPMX19_06502 at 287.525 kb on + strand, within MPMX19_06502 at 287.525 kb on + strand, within MPMX19_06502 at 287.525 kb on + strand, within MPMX19_06502 at 287.525 kb on + strand, within MPMX19_06502 at 287.525 kb on + strand, within MPMX19_06502 at 287.526 kb on - strand, within MPMX19_06502 at 287.526 kb on - strand, within MPMX19_06502 at 287.526 kb on - strand, within MPMX19_06502 at 287.526 kb on - strand, within MPMX19_06502 at 287.526 kb on - strand, within MPMX19_06502 at 287.526 kb on - strand, within MPMX19_06502 at 287.574 kb on - strand, within MPMX19_06502 at 287.586 kb on - strand, within MPMX19_06502 at 287.586 kb on - strand, within MPMX19_06502 at 288.195 kb on + strand at 288.195 kb on + strand at 288.644 kb on - strand at 288.968 kb on + strand at 288.968 kb on + strand at 289.025 kb on + strand at 289.121 kb on - strand at 289.121 kb on - strand at 289.121 kb on - strand at 289.212 kb on - strand, within MPMX19_06505 at 289.212 kb on - strand, within MPMX19_06505 at 289.212 kb on - strand, within MPMX19_06505
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 287,525 + MPMX19_06502 0.60 -0.7 287,525 + MPMX19_06502 0.60 +0.9 287,525 + MPMX19_06502 0.60 -1.1 287,525 + MPMX19_06502 0.60 +0.2 287,525 + MPMX19_06502 0.60 -0.9 287,525 + MPMX19_06502 0.60 -0.3 287,525 + MPMX19_06502 0.60 +0.2 287,525 + MPMX19_06502 0.60 +0.2 287,525 + MPMX19_06502 0.60 -0.7 287,525 + MPMX19_06502 0.60 +0.0 287,526 - MPMX19_06502 0.60 +0.9 287,526 - MPMX19_06502 0.60 -0.7 287,526 - MPMX19_06502 0.60 -0.3 287,526 - MPMX19_06502 0.60 +0.1 287,526 - MPMX19_06502 0.60 -0.5 287,526 - MPMX19_06502 0.60 +0.6 287,574 - MPMX19_06502 0.63 -1.9 287,586 - MPMX19_06502 0.64 -0.6 287,586 - MPMX19_06502 0.64 +0.4 288,195 + +0.1 288,195 + +0.7 288,644 - +0.3 288,968 + +0.2 288,968 + +0.3 289,025 + -1.4 289,121 - -0.9 289,121 - -0.2 289,121 - -0.9 289,212 - MPMX19_06505 0.14 -2.2 289,212 - MPMX19_06505 0.14 -1.4 289,212 - MPMX19_06505 0.14 -0.1
Or see this region's nucleotide sequence