Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06479

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06477 and MPMX19_06478 overlap by 11 nucleotidesMPMX19_06478 and MPMX19_06479 overlap by 4 nucleotidesMPMX19_06479 and MPMX19_06480 are separated by 9 nucleotides MPMX19_06477: MPMX19_06477 - Putative aliphatic sulfonates-binding protein, at 260,821 to 261,804 _06477 MPMX19_06478: MPMX19_06478 - hypothetical protein, at 261,794 to 262,642 _06478 MPMX19_06479: MPMX19_06479 - (R)-phenoxypropionate/alpha-ketoglutarate- dioxygenase, at 262,639 to 263,529 _06479 MPMX19_06480: MPMX19_06480 - hypothetical protein, at 263,539 to 264,573 _06480 Position (kb) 262 263 264Strain fitness (log2 ratio) -2 -1 0 1at 261.653 kb on - strand, within MPMX19_06477at 261.653 kb on - strand, within MPMX19_06477at 262.023 kb on + strand, within MPMX19_06478at 262.024 kb on - strand, within MPMX19_06478at 262.024 kb on - strand, within MPMX19_06478at 262.024 kb on - strand, within MPMX19_06478at 262.344 kb on + strand, within MPMX19_06478at 262.416 kb on - strand, within MPMX19_06478at 262.416 kb on - strand, within MPMX19_06478at 262.515 kb on + strand, within MPMX19_06478at 262.515 kb on + strand, within MPMX19_06478at 262.515 kb on + strand, within MPMX19_06478at 262.515 kb on + strand, within MPMX19_06478at 262.515 kb on + strand, within MPMX19_06478at 262.516 kb on - strand, within MPMX19_06478at 262.516 kb on - strand, within MPMX19_06478at 262.516 kb on - strand, within MPMX19_06478at 262.516 kb on - strand, within MPMX19_06478at 262.516 kb on - strand, within MPMX19_06478at 263.010 kb on - strand, within MPMX19_06479at 263.091 kb on - strand, within MPMX19_06479at 263.091 kb on - strand, within MPMX19_06479at 263.150 kb on + strand, within MPMX19_06479at 263.150 kb on + strand, within MPMX19_06479at 263.165 kb on + strand, within MPMX19_06479at 263.165 kb on + strand, within MPMX19_06479at 263.166 kb on - strand, within MPMX19_06479at 263.166 kb on - strand, within MPMX19_06479at 263.183 kb on + strand, within MPMX19_06479at 263.183 kb on + strand, within MPMX19_06479at 263.183 kb on + strand, within MPMX19_06479at 263.183 kb on + strand, within MPMX19_06479at 263.184 kb on - strand, within MPMX19_06479at 263.184 kb on - strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.667 kb on - strand, within MPMX19_06480at 263.667 kb on - strand, within MPMX19_06480at 263.738 kb on + strand, within MPMX19_06480at 263.738 kb on + strand, within MPMX19_06480at 263.739 kb on - strand, within MPMX19_06480at 263.739 kb on - strand, within MPMX19_06480at 263.739 kb on - strand, within MPMX19_06480at 263.739 kb on - strand, within MPMX19_06480at 263.891 kb on + strand, within MPMX19_06480at 263.891 kb on + strand, within MPMX19_06480at 263.891 kb on + strand, within MPMX19_06480at 263.891 kb on + strand, within MPMX19_06480at 263.891 kb on + strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 264.102 kb on - strand, within MPMX19_06480at 264.102 kb on - strand, within MPMX19_06480at 264.102 kb on - strand, within MPMX19_06480at 264.188 kb on + strand, within MPMX19_06480at 264.188 kb on + strand, within MPMX19_06480at 264.189 kb on - strand, within MPMX19_06480at 264.189 kb on - strand, within MPMX19_06480at 264.347 kb on + strand, within MPMX19_06480at 264.347 kb on + strand, within MPMX19_06480at 264.347 kb on + strand, within MPMX19_06480at 264.347 kb on + strand, within MPMX19_06480at 264.347 kb on + strand, within MPMX19_06480at 264.419 kb on + strand, within MPMX19_06480at 264.419 kb on + strand, within MPMX19_06480at 264.419 kb on + strand, within MPMX19_06480at 264.419 kb on + strand, within MPMX19_06480at 264.419 kb on + strand, within MPMX19_06480at 264.420 kb on - strand, within MPMX19_06480at 264.420 kb on - strand, within MPMX19_06480at 264.432 kb on - strand, within MPMX19_06480

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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261,653 - MPMX19_06477 0.85 +1.3
261,653 - MPMX19_06477 0.85 -1.4
262,023 + MPMX19_06478 0.27 -0.2
262,024 - MPMX19_06478 0.27 -0.0
262,024 - MPMX19_06478 0.27 -0.1
262,024 - MPMX19_06478 0.27 -0.9
262,344 + MPMX19_06478 0.65 -0.1
262,416 - MPMX19_06478 0.73 +0.9
262,416 - MPMX19_06478 0.73 +1.6
262,515 + MPMX19_06478 0.85 +0.9
262,515 + MPMX19_06478 0.85 -0.1
262,515 + MPMX19_06478 0.85 -0.0
262,515 + MPMX19_06478 0.85 +0.3
262,515 + MPMX19_06478 0.85 -0.8
262,516 - MPMX19_06478 0.85 -0.0
262,516 - MPMX19_06478 0.85 +0.6
262,516 - MPMX19_06478 0.85 -0.8
262,516 - MPMX19_06478 0.85 +1.5
262,516 - MPMX19_06478 0.85 +0.7
263,010 - MPMX19_06479 0.42 +0.5
263,091 - MPMX19_06479 0.51 -0.8
263,091 - MPMX19_06479 0.51 -0.3
263,150 + MPMX19_06479 0.57 -0.4
263,150 + MPMX19_06479 0.57 +0.5
263,165 + MPMX19_06479 0.59 -0.2
263,165 + MPMX19_06479 0.59 +1.3
263,166 - MPMX19_06479 0.59 +0.2
263,166 - MPMX19_06479 0.59 +0.6
263,183 + MPMX19_06479 0.61 +0.4
263,183 + MPMX19_06479 0.61 -1.2
263,183 + MPMX19_06479 0.61 +1.3
263,183 + MPMX19_06479 0.61 -0.8
263,184 - MPMX19_06479 0.61 -1.3
263,184 - MPMX19_06479 0.61 +0.1
263,267 + MPMX19_06479 0.70 +0.3
263,267 + MPMX19_06479 0.70 +1.3
263,267 + MPMX19_06479 0.70 -1.9
263,267 + MPMX19_06479 0.70 -0.2
263,267 + MPMX19_06479 0.70 -0.4
263,267 + MPMX19_06479 0.70 -0.9
263,267 + MPMX19_06479 0.70 +0.3
263,267 + MPMX19_06479 0.70 -1.2
263,267 + MPMX19_06479 0.70 -0.1
263,267 + MPMX19_06479 0.70 -0.9
263,267 + MPMX19_06479 0.70 +0.1
263,267 + MPMX19_06479 0.70 +0.2
263,267 + MPMX19_06479 0.70 +0.4
263,267 + MPMX19_06479 0.70 +0.1
263,667 - MPMX19_06480 0.12 -0.2
263,667 - MPMX19_06480 0.12 -0.1
263,738 + MPMX19_06480 0.19 +1.2
263,738 + MPMX19_06480 0.19 -0.7
263,739 - MPMX19_06480 0.19 -1.8
263,739 - MPMX19_06480 0.19 +0.1
263,739 - MPMX19_06480 0.19 +0.1
263,739 - MPMX19_06480 0.19 +1.3
263,891 + MPMX19_06480 0.34 +0.4
263,891 + MPMX19_06480 0.34 -0.9
263,891 + MPMX19_06480 0.34 +0.2
263,891 + MPMX19_06480 0.34 +0.2
263,891 + MPMX19_06480 0.34 +0.8
263,892 - MPMX19_06480 0.34 +0.1
263,892 - MPMX19_06480 0.34 -1.5
263,892 - MPMX19_06480 0.34 -0.3
263,892 - MPMX19_06480 0.34 -1.8
263,892 - MPMX19_06480 0.34 +0.9
263,892 - MPMX19_06480 0.34 +0.5
263,892 - MPMX19_06480 0.34 -0.4
264,102 - MPMX19_06480 0.54 -1.5
264,102 - MPMX19_06480 0.54 +1.7
264,102 - MPMX19_06480 0.54 -0.7
264,188 + MPMX19_06480 0.63 +0.2
264,188 + MPMX19_06480 0.63 -1.2
264,189 - MPMX19_06480 0.63 -0.1
264,189 - MPMX19_06480 0.63 -0.4
264,347 + MPMX19_06480 0.78 +0.2
264,347 + MPMX19_06480 0.78 +0.1
264,347 + MPMX19_06480 0.78 +0.1
264,347 + MPMX19_06480 0.78 -1.0
264,347 + MPMX19_06480 0.78 +0.1
264,419 + MPMX19_06480 0.85 -0.3
264,419 + MPMX19_06480 0.85 -0.8
264,419 + MPMX19_06480 0.85 +0.8
264,419 + MPMX19_06480 0.85 +0.6
264,419 + MPMX19_06480 0.85 +0.3
264,420 - MPMX19_06480 0.85 +1.2
264,420 - MPMX19_06480 0.85 -0.2
264,432 - MPMX19_06480 0.86 -1.7

Or see this region's nucleotide sequence