Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06478

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06477 and MPMX19_06478 overlap by 11 nucleotidesMPMX19_06478 and MPMX19_06479 overlap by 4 nucleotidesMPMX19_06479 and MPMX19_06480 are separated by 9 nucleotides MPMX19_06477: MPMX19_06477 - Putative aliphatic sulfonates-binding protein, at 260,821 to 261,804 _06477 MPMX19_06478: MPMX19_06478 - hypothetical protein, at 261,794 to 262,642 _06478 MPMX19_06479: MPMX19_06479 - (R)-phenoxypropionate/alpha-ketoglutarate- dioxygenase, at 262,639 to 263,529 _06479 MPMX19_06480: MPMX19_06480 - hypothetical protein, at 263,539 to 264,573 _06480 Position (kb) 261 262 263Strain fitness (log2 ratio) -2 -1 0 1 2at 261.143 kb on + strand, within MPMX19_06477at 261.143 kb on + strand, within MPMX19_06477at 261.143 kb on + strand, within MPMX19_06477at 261.144 kb on - strand, within MPMX19_06477at 261.144 kb on - strand, within MPMX19_06477at 261.144 kb on - strand, within MPMX19_06477at 261.144 kb on - strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.218 kb on + strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.219 kb on - strand, within MPMX19_06477at 261.351 kb on - strand, within MPMX19_06477at 261.351 kb on - strand, within MPMX19_06477at 261.394 kb on + strand, within MPMX19_06477at 261.394 kb on + strand, within MPMX19_06477at 261.394 kb on + strand, within MPMX19_06477at 261.394 kb on + strand, within MPMX19_06477at 261.394 kb on + strand, within MPMX19_06477at 261.394 kb on + strand, within MPMX19_06477at 261.394 kb on + strand, within MPMX19_06477at 261.530 kb on + strand, within MPMX19_06477at 261.530 kb on + strand, within MPMX19_06477at 261.530 kb on + strand, within MPMX19_06477at 261.531 kb on - strand, within MPMX19_06477at 261.531 kb on - strand, within MPMX19_06477at 261.653 kb on - strand, within MPMX19_06477at 261.653 kb on - strand, within MPMX19_06477at 262.023 kb on + strand, within MPMX19_06478at 262.024 kb on - strand, within MPMX19_06478at 262.024 kb on - strand, within MPMX19_06478at 262.024 kb on - strand, within MPMX19_06478at 262.344 kb on + strand, within MPMX19_06478at 262.416 kb on - strand, within MPMX19_06478at 262.416 kb on - strand, within MPMX19_06478at 262.515 kb on + strand, within MPMX19_06478at 262.515 kb on + strand, within MPMX19_06478at 262.515 kb on + strand, within MPMX19_06478at 262.515 kb on + strand, within MPMX19_06478at 262.515 kb on + strand, within MPMX19_06478at 262.516 kb on - strand, within MPMX19_06478at 262.516 kb on - strand, within MPMX19_06478at 262.516 kb on - strand, within MPMX19_06478at 262.516 kb on - strand, within MPMX19_06478at 262.516 kb on - strand, within MPMX19_06478at 263.010 kb on - strand, within MPMX19_06479at 263.091 kb on - strand, within MPMX19_06479at 263.091 kb on - strand, within MPMX19_06479at 263.150 kb on + strand, within MPMX19_06479at 263.150 kb on + strand, within MPMX19_06479at 263.165 kb on + strand, within MPMX19_06479at 263.165 kb on + strand, within MPMX19_06479at 263.166 kb on - strand, within MPMX19_06479at 263.166 kb on - strand, within MPMX19_06479at 263.183 kb on + strand, within MPMX19_06479at 263.183 kb on + strand, within MPMX19_06479at 263.183 kb on + strand, within MPMX19_06479at 263.183 kb on + strand, within MPMX19_06479at 263.184 kb on - strand, within MPMX19_06479at 263.184 kb on - strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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261,143 + MPMX19_06477 0.33 -0.1
261,143 + MPMX19_06477 0.33 +0.6
261,143 + MPMX19_06477 0.33 -0.7
261,144 - MPMX19_06477 0.33 -2.3
261,144 - MPMX19_06477 0.33 -0.1
261,144 - MPMX19_06477 0.33 -1.7
261,144 - MPMX19_06477 0.33 -0.1
261,218 + MPMX19_06477 0.40 -0.6
261,218 + MPMX19_06477 0.40 -0.1
261,218 + MPMX19_06477 0.40 +0.1
261,218 + MPMX19_06477 0.40 -0.1
261,218 + MPMX19_06477 0.40 +0.6
261,218 + MPMX19_06477 0.40 +0.2
261,218 + MPMX19_06477 0.40 -0.7
261,218 + MPMX19_06477 0.40 -1.8
261,218 + MPMX19_06477 0.40 -0.3
261,218 + MPMX19_06477 0.40 +0.2
261,218 + MPMX19_06477 0.40 -0.6
261,218 + MPMX19_06477 0.40 -1.1
261,218 + MPMX19_06477 0.40 -1.2
261,218 + MPMX19_06477 0.40 +0.1
261,218 + MPMX19_06477 0.40 -0.7
261,218 + MPMX19_06477 0.40 -0.8
261,218 + MPMX19_06477 0.40 +1.1
261,218 + MPMX19_06477 0.40 +0.3
261,218 + MPMX19_06477 0.40 -0.8
261,218 + MPMX19_06477 0.40 -1.5
261,218 + MPMX19_06477 0.40 -0.9
261,218 + MPMX19_06477 0.40 -0.7
261,218 + MPMX19_06477 0.40 +0.5
261,218 + MPMX19_06477 0.40 +0.5
261,218 + MPMX19_06477 0.40 +1.1
261,218 + MPMX19_06477 0.40 -0.1
261,218 + MPMX19_06477 0.40 +0.5
261,218 + MPMX19_06477 0.40 +0.2
261,218 + MPMX19_06477 0.40 +0.2
261,218 + MPMX19_06477 0.40 -0.6
261,219 - MPMX19_06477 0.40 +1.3
261,219 - MPMX19_06477 0.40 -1.0
261,219 - MPMX19_06477 0.40 -0.0
261,219 - MPMX19_06477 0.40 +0.2
261,219 - MPMX19_06477 0.40 -0.5
261,219 - MPMX19_06477 0.40 -0.5
261,219 - MPMX19_06477 0.40 +0.5
261,219 - MPMX19_06477 0.40 -0.8
261,219 - MPMX19_06477 0.40 -1.2
261,219 - MPMX19_06477 0.40 -0.3
261,219 - MPMX19_06477 0.40 -0.4
261,219 - MPMX19_06477 0.40 -0.2
261,219 - MPMX19_06477 0.40 -1.4
261,219 - MPMX19_06477 0.40 +0.1
261,219 - MPMX19_06477 0.40 -1.2
261,219 - MPMX19_06477 0.40 +0.3
261,219 - MPMX19_06477 0.40 -0.1
261,219 - MPMX19_06477 0.40 -0.1
261,219 - MPMX19_06477 0.40 -0.4
261,219 - MPMX19_06477 0.40 +0.6
261,219 - MPMX19_06477 0.40 -0.3
261,219 - MPMX19_06477 0.40 -0.3
261,219 - MPMX19_06477 0.40 -0.1
261,219 - MPMX19_06477 0.40 +0.3
261,219 - MPMX19_06477 0.40 -1.1
261,219 - MPMX19_06477 0.40 -0.3
261,219 - MPMX19_06477 0.40 -0.0
261,219 - MPMX19_06477 0.40 +1.4
261,219 - MPMX19_06477 0.40 -0.6
261,219 - MPMX19_06477 0.40 -0.3
261,219 - MPMX19_06477 0.40 +1.7
261,351 - MPMX19_06477 0.54 +2.3
261,351 - MPMX19_06477 0.54 -1.2
261,394 + MPMX19_06477 0.58 -1.9
261,394 + MPMX19_06477 0.58 -0.5
261,394 + MPMX19_06477 0.58 +0.1
261,394 + MPMX19_06477 0.58 +0.2
261,394 + MPMX19_06477 0.58 -0.9
261,394 + MPMX19_06477 0.58 +0.1
261,394 + MPMX19_06477 0.58 -0.1
261,530 + MPMX19_06477 0.72 -1.1
261,530 + MPMX19_06477 0.72 -0.0
261,530 + MPMX19_06477 0.72 -0.7
261,531 - MPMX19_06477 0.72 -0.4
261,531 - MPMX19_06477 0.72 -2.4
261,653 - MPMX19_06477 0.85 +1.3
261,653 - MPMX19_06477 0.85 -1.4
262,023 + MPMX19_06478 0.27 -0.2
262,024 - MPMX19_06478 0.27 -0.0
262,024 - MPMX19_06478 0.27 -0.1
262,024 - MPMX19_06478 0.27 -0.9
262,344 + MPMX19_06478 0.65 -0.1
262,416 - MPMX19_06478 0.73 +0.9
262,416 - MPMX19_06478 0.73 +1.6
262,515 + MPMX19_06478 0.85 +0.9
262,515 + MPMX19_06478 0.85 -0.1
262,515 + MPMX19_06478 0.85 -0.0
262,515 + MPMX19_06478 0.85 +0.3
262,515 + MPMX19_06478 0.85 -0.8
262,516 - MPMX19_06478 0.85 -0.0
262,516 - MPMX19_06478 0.85 +0.6
262,516 - MPMX19_06478 0.85 -0.8
262,516 - MPMX19_06478 0.85 +1.5
262,516 - MPMX19_06478 0.85 +0.7
263,010 - MPMX19_06479 0.42 +0.5
263,091 - MPMX19_06479 0.51 -0.8
263,091 - MPMX19_06479 0.51 -0.3
263,150 + MPMX19_06479 0.57 -0.4
263,150 + MPMX19_06479 0.57 +0.5
263,165 + MPMX19_06479 0.59 -0.2
263,165 + MPMX19_06479 0.59 +1.3
263,166 - MPMX19_06479 0.59 +0.2
263,166 - MPMX19_06479 0.59 +0.6
263,183 + MPMX19_06479 0.61 +0.4
263,183 + MPMX19_06479 0.61 -1.2
263,183 + MPMX19_06479 0.61 +1.3
263,183 + MPMX19_06479 0.61 -0.8
263,184 - MPMX19_06479 0.61 -1.3
263,184 - MPMX19_06479 0.61 +0.1
263,267 + MPMX19_06479 0.70 +0.3
263,267 + MPMX19_06479 0.70 +1.3
263,267 + MPMX19_06479 0.70 -1.9
263,267 + MPMX19_06479 0.70 -0.2
263,267 + MPMX19_06479 0.70 -0.4
263,267 + MPMX19_06479 0.70 -0.9
263,267 + MPMX19_06479 0.70 +0.3
263,267 + MPMX19_06479 0.70 -1.2
263,267 + MPMX19_06479 0.70 -0.1
263,267 + MPMX19_06479 0.70 -0.9
263,267 + MPMX19_06479 0.70 +0.1
263,267 + MPMX19_06479 0.70 +0.2
263,267 + MPMX19_06479 0.70 +0.4
263,267 + MPMX19_06479 0.70 +0.1

Or see this region's nucleotide sequence