Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06475

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06473 and MPMX19_06474 are separated by 26 nucleotidesMPMX19_06474 and MPMX19_06475 are separated by 6 nucleotidesMPMX19_06475 and MPMX19_06476 are separated by 128 nucleotides MPMX19_06473: MPMX19_06473 - Putative aliphatic sulfonates-binding protein, at 257,007 to 258,020 _06473 MPMX19_06474: MPMX19_06474 - Vitamin B12 import ATP-binding protein BtuD, at 258,047 to 258,910 _06474 MPMX19_06475: MPMX19_06475 - Putative aliphatic sulfonates transport permease protein SsuC, at 258,917 to 259,744 _06475 MPMX19_06476: MPMX19_06476 - HTH-type transcriptional regulator ArgP, at 259,873 to 260,790 _06476 Position (kb) 258 259 260Strain fitness (log2 ratio) -3 -2 -1 0 1at 258.009 kb on - strandat 258.088 kb on - strandat 258.648 kb on - strand, within MPMX19_06474at 259.137 kb on + strand, within MPMX19_06475at 259.278 kb on + strand, within MPMX19_06475at 259.278 kb on + strand, within MPMX19_06475at 259.278 kb on + strand, within MPMX19_06475at 259.278 kb on + strand, within MPMX19_06475at 259.279 kb on - strand, within MPMX19_06475at 259.307 kb on + strand, within MPMX19_06475at 259.307 kb on + strand, within MPMX19_06475at 259.307 kb on + strand, within MPMX19_06475at 259.308 kb on - strand, within MPMX19_06475at 259.308 kb on - strand, within MPMX19_06475at 259.308 kb on - strand, within MPMX19_06475at 259.308 kb on - strand, within MPMX19_06475at 259.308 kb on - strand, within MPMX19_06475at 259.651 kb on + strand, within MPMX19_06475at 259.651 kb on + strand, within MPMX19_06475at 259.651 kb on + strand, within MPMX19_06475at 259.651 kb on + strand, within MPMX19_06475at 259.652 kb on - strand, within MPMX19_06475at 259.778 kb on - strandat 260.014 kb on + strand, within MPMX19_06476at 260.015 kb on - strand, within MPMX19_06476at 260.275 kb on + strand, within MPMX19_06476at 260.275 kb on + strand, within MPMX19_06476at 260.275 kb on + strand, within MPMX19_06476at 260.275 kb on + strand, within MPMX19_06476at 260.275 kb on + strand, within MPMX19_06476at 260.275 kb on + strand, within MPMX19_06476at 260.275 kb on + strand, within MPMX19_06476at 260.275 kb on + strand, within MPMX19_06476at 260.275 kb on + strand, within MPMX19_06476at 260.276 kb on - strand, within MPMX19_06476at 260.276 kb on - strand, within MPMX19_06476at 260.276 kb on - strand, within MPMX19_06476at 260.276 kb on - strand, within MPMX19_06476at 260.276 kb on - strand, within MPMX19_06476at 260.276 kb on - strand, within MPMX19_06476at 260.276 kb on - strand, within MPMX19_06476at 260.276 kb on - strand, within MPMX19_06476at 260.276 kb on - strand, within MPMX19_06476at 260.276 kb on - strand, within MPMX19_06476at 260.276 kb on - strand, within MPMX19_06476at 260.276 kb on - strand, within MPMX19_06476at 260.276 kb on - strand, within MPMX19_06476at 260.571 kb on - strand, within MPMX19_06476at 260.571 kb on - strand, within MPMX19_06476at 260.571 kb on - strand, within MPMX19_06476at 260.571 kb on - strand, within MPMX19_06476

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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258,009 - -0.6
258,088 - -0.9
258,648 - MPMX19_06474 0.70 -0.7
259,137 + MPMX19_06475 0.27 -1.1
259,278 + MPMX19_06475 0.44 +0.2
259,278 + MPMX19_06475 0.44 +0.3
259,278 + MPMX19_06475 0.44 -1.8
259,278 + MPMX19_06475 0.44 -0.7
259,279 - MPMX19_06475 0.44 -0.4
259,307 + MPMX19_06475 0.47 -2.3
259,307 + MPMX19_06475 0.47 +0.1
259,307 + MPMX19_06475 0.47 +0.1
259,308 - MPMX19_06475 0.47 -0.8
259,308 - MPMX19_06475 0.47 +1.3
259,308 - MPMX19_06475 0.47 -1.3
259,308 - MPMX19_06475 0.47 -1.6
259,308 - MPMX19_06475 0.47 -0.7
259,651 + MPMX19_06475 0.89 -0.9
259,651 + MPMX19_06475 0.89 +0.5
259,651 + MPMX19_06475 0.89 +0.8
259,651 + MPMX19_06475 0.89 -0.2
259,652 - MPMX19_06475 0.89 -0.5
259,778 - +0.3
260,014 + MPMX19_06476 0.15 -1.2
260,015 - MPMX19_06476 0.15 -0.5
260,275 + MPMX19_06476 0.44 +0.4
260,275 + MPMX19_06476 0.44 -1.0
260,275 + MPMX19_06476 0.44 -0.1
260,275 + MPMX19_06476 0.44 -1.2
260,275 + MPMX19_06476 0.44 -0.4
260,275 + MPMX19_06476 0.44 +0.7
260,275 + MPMX19_06476 0.44 -0.4
260,275 + MPMX19_06476 0.44 -0.7
260,275 + MPMX19_06476 0.44 +0.3
260,276 - MPMX19_06476 0.44 -1.7
260,276 - MPMX19_06476 0.44 -0.0
260,276 - MPMX19_06476 0.44 -0.5
260,276 - MPMX19_06476 0.44 -0.7
260,276 - MPMX19_06476 0.44 -0.9
260,276 - MPMX19_06476 0.44 +0.9
260,276 - MPMX19_06476 0.44 -0.8
260,276 - MPMX19_06476 0.44 +0.2
260,276 - MPMX19_06476 0.44 +1.2
260,276 - MPMX19_06476 0.44 -1.1
260,276 - MPMX19_06476 0.44 +0.5
260,276 - MPMX19_06476 0.44 +0.5
260,276 - MPMX19_06476 0.44 -2.8
260,571 - MPMX19_06476 0.76 -0.4
260,571 - MPMX19_06476 0.76 +0.2
260,571 - MPMX19_06476 0.76 -0.0
260,571 - MPMX19_06476 0.76 -2.2

Or see this region's nucleotide sequence